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Conserved domains on  [gi|501021304|ref|WP_012073972|]
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MULTISPECIES: YfhL family 4Fe-4S dicluster ferredoxin [Pseudomonas aeruginosa group]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
di_4Fe-4S_YfhL NF033683
YfhL family 4Fe-4S dicluster ferredoxin;
1-79 2.42e-53

YfhL family 4Fe-4S dicluster ferredoxin;


:

Pssm-ID: 468141 [Multi-domain]  Cd Length: 79  Bit Score: 159.96  E-value: 2.42e-53
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 501021304  1 MSLKITDDCINCDVCEPECPNGAISQGEEIYVIDPNLCTECVGHYDEPQCQQVCPVDCIPLDEANVESKDQLMEKYRKI 79
Cdd:NF033683  1 MALLITDECINCDVCEPECPNEAISMGDEIYEIDPDRCTECVGHYDEPQCVQVCPVDCIIPDPDHVETQEQLMEKYERL 79
 
Name Accession Description Interval E-value
di_4Fe-4S_YfhL NF033683
YfhL family 4Fe-4S dicluster ferredoxin;
1-79 2.42e-53

YfhL family 4Fe-4S dicluster ferredoxin;


Pssm-ID: 468141 [Multi-domain]  Cd Length: 79  Bit Score: 159.96  E-value: 2.42e-53
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 501021304  1 MSLKITDDCINCDVCEPECPNGAISQGEEIYVIDPNLCTECVGHYDEPQCQQVCPVDCIPLDEANVESKDQLMEKYRKI 79
Cdd:NF033683  1 MALLITDECINCDVCEPECPNEAISMGDEIYEIDPDRCTECVGHYDEPQCVQVCPVDCIIPDPDHVETQEQLMEKYERL 79
COG2768 COG2768
Uncharacterized Fe-S cluster protein [Function unknown];
1-76 7.64e-13

Uncharacterized Fe-S cluster protein [Function unknown];


Pssm-ID: 442050 [Multi-domain]  Cd Length: 74  Bit Score: 57.43  E-value: 7.64e-13
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 501021304  1 MSLKITDDCINCDVCEPECPNGAISQGEEIYVIDPNLCTECvghydePQCQQVCPVDCIPLDEANVESKDQLMEKY 76
Cdd:COG2768   5 KPYVDEEKCIGCGACVKVCPVGAISIEDGKAVIDPEKCIGC------GACIEVCPVGAIKIEWEEDEEFQEKMAEY 74
MtMvhB_like cd10549
Uncharacterized polyferredoxin-like protein; This family contains uncharacterized ...
 7-59 2.25e-06

Uncharacterized polyferredoxin-like protein; This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction.


Pssm-ID: 319871 [Multi-domain]  Cd Length: 128  Bit Score: 42.00  E-value: 2.25e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 501021304   7 DDCINCDVCEPECPNGAISQGEEI-YVIDPNLCTECvghydePQCQQVCPVDCI 59
Cdd:cd10549   78 EKCIGCGLCVKVCPVDAITLEDELeIVIDKEKCIGC------GICAEVCPVNAI 125
PRK07118 PRK07118
Fe-S cluster domain-containing protein;
9-69 1.51e-05

Fe-S cluster domain-containing protein;


Pssm-ID: 235941 [Multi-domain]  Cd Length: 280  Bit Score: 41.07  E-value: 1.51e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 501021304   9 CINCDVCEPECPNGAISQGEEIYVIDPNLCTECvghydePQCQQVCPVDCIPLDEANVESK 69
Cdd:PRK07118 215 CIGCGKCVKACPAGAITMENNLAVIDQEKCTSC------GKCVEKCPTKAIRILNKPPKVK 269
Fer4_7 pfam12838
4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to ...
 9-58 3.84e-04

4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.


Pssm-ID: 463724 [Multi-domain]  Cd Length: 51  Bit Score: 34.81  E-value: 3.84e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 501021304   9 CINCDVCEPECPNGAIS-------QGEEIYVIDPNLCTECvghydePQCQQVCPVDC 58
Cdd:pfam12838  1 CIGCGACVAACPVGAITldevgekKGTKTVVIDPERCVGC------GACVAVCPTGA 51
rnfB TIGR01944
electron transport complex, RnfABCDGE type, B subunit; The six subunit complex RnfABCDGE in ...
 7-59 8.33e-03

electron transport complex, RnfABCDGE type, B subunit; The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit. [Energy metabolism, Electron transport]


Pssm-ID: 273887 [Multi-domain]  Cd Length: 165  Bit Score: 32.85  E-value: 8.33e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 501021304    7 DDCINCDVCEPECPNGAISQG-EEIYVIDPNLCTECvghydePQCQQVCPVDCI 59
Cdd:TIGR01944 113 DNCIGCTKCIQACPVDAIVGAaKAMHTVIADECTGC------DLCVEPCPTDCI 160
 
Name Accession Description Interval E-value
di_4Fe-4S_YfhL NF033683
YfhL family 4Fe-4S dicluster ferredoxin;
1-79 2.42e-53

YfhL family 4Fe-4S dicluster ferredoxin;


Pssm-ID: 468141 [Multi-domain]  Cd Length: 79  Bit Score: 159.96  E-value: 2.42e-53
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 501021304  1 MSLKITDDCINCDVCEPECPNGAISQGEEIYVIDPNLCTECVGHYDEPQCQQVCPVDCIPLDEANVESKDQLMEKYRKI 79
Cdd:NF033683  1 MALLITDECINCDVCEPECPNEAISMGDEIYEIDPDRCTECVGHYDEPQCVQVCPVDCIIPDPDHVETQEQLMEKYERL 79
COG2768 COG2768
Uncharacterized Fe-S cluster protein [Function unknown];
1-76 7.64e-13

Uncharacterized Fe-S cluster protein [Function unknown];


Pssm-ID: 442050 [Multi-domain]  Cd Length: 74  Bit Score: 57.43  E-value: 7.64e-13
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 501021304  1 MSLKITDDCINCDVCEPECPNGAISQGEEIYVIDPNLCTECvghydePQCQQVCPVDCIPLDEANVESKDQLMEKY 76
Cdd:COG2768   5 KPYVDEEKCIGCGACVKVCPVGAISIEDGKAVIDPEKCIGC------GACIEVCPVGAIKIEWEEDEEFQEKMAEY 74
NuoI COG1143
Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy ...
 6-70 1.42e-09

Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]; Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440758 [Multi-domain]  Cd Length: 66  Bit Score: 48.97  E-value: 1.42e-09
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 501021304  6 TDDCINCDVCEPECPNGAISQGEE----IYVIDPNLCTECVghydepQCQQVCPVDCIPLDEANVESKD 70
Cdd:COG1143   1 EDKCIGCGLCVRVCPVDAITIEDGepgkVYVIDPDKCIGCG------LCVEVCPTGAISMTPFELAVED 63
IorA COG4231
TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit [Energy production and ...
 1-63 1.16e-08

TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit [Energy production and conversion];


Pssm-ID: 443375 [Multi-domain]  Cd Length: 76  Bit Score: 46.96  E-value: 1.16e-08
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 501021304  1 MSLKI-TDDCINCDVCEPECPNGAISQGEEIYVIDPNLCTECVghydepQCQQVCPVDCIPLDE 63
Cdd:COG4231  15 MRYVIdEDKCTGCGACVKVCPADAIEEGDGKAVIDPDLCIGCG------SCVQVCPVDAIKLEK 72
NapF COG1145
Ferredoxin [Energy production and conversion];
6-67 1.82e-07

Ferredoxin [Energy production and conversion];


Pssm-ID: 440760 [Multi-domain]  Cd Length: 238  Bit Score: 46.25  E-value: 1.82e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 501021304   6 TDDCINCDVCEPECPNGAISQGEE--IYVIDPNLCTECvghydePQCQQVCPVDCIPLDEANVE 67
Cdd:COG1145  181 AEKCIGCGLCVKVCPTGAIRLKDGkpQIVVDPDKCIGC------GACVKVCPVGAISLEPKEIE 238
MtMvhB_like cd10549
Uncharacterized polyferredoxin-like protein; This family contains uncharacterized ...
 7-59 2.25e-06

Uncharacterized polyferredoxin-like protein; This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction.


Pssm-ID: 319871 [Multi-domain]  Cd Length: 128  Bit Score: 42.00  E-value: 2.25e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 501021304   7 DDCINCDVCEPECPNGAISQGEEI-YVIDPNLCTECvghydePQCQQVCPVDCI 59
Cdd:cd10549   78 EKCIGCGLCVKVCPVDAITLEDELeIVIDKEKCIGC------GICAEVCPVNAI 125
COG1149 COG1149
MinD superfamily P-loop ATPase, contains an inserted ferredoxin domain [General function ...
 6-63 4.88e-06

MinD superfamily P-loop ATPase, contains an inserted ferredoxin domain [General function prediction only];


Pssm-ID: 440763 [Multi-domain]  Cd Length: 68  Bit Score: 40.10  E-value: 4.88e-06
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 501021304  6 TDDCINCDVCEPECPNGAISQGEE-IYVIDPNLCTECVGhydepqCQQVCPVDCIPLDE 63
Cdd:COG1149  10 EEKCIGCGLCVEVCPEGAIKLDDGgAPVVDPDLCTGCGA------CVGVCPTGAITLEE 62
PreA COG1146
NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit [Nucleotide transport and ...
 5-67 6.42e-06

NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit [Nucleotide transport and metabolism];


Pssm-ID: 440761 [Multi-domain]  Cd Length: 67  Bit Score: 39.69  E-value: 6.42e-06
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 501021304  5 ITDDCINCDVCEPECPNGAI---SQGEEIYVIDPNLCTECvghydePQCQQVCPVDCIPLDEANVE 67
Cdd:COG1146   6 DTDKCIGCGACVEVCPVDVLeldEEGKKALVINPEECIGC------GACELVCPVGAITVEDDEPE 65
HdrA COG1148
Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];
7-59 6.65e-06

Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];


Pssm-ID: 440762 [Multi-domain]  Cd Length: 563  Bit Score: 42.15  E-value: 6.65e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 501021304   7 DDCINCDVCEPECPNGAISQGEE-IYVIDPNLCTECvGhydepQCQQVCPVDCI 59
Cdd:COG1148  496 EKCTGCGRCVEVCPYGAISIDEKgVAEVNPALCKGC-G-----TCAAACPSGAI 543
DsrA COG2221
Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Inorganic ion ...
 7-59 9.34e-06

Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Inorganic ion transport and metabolism];


Pssm-ID: 441823 [Multi-domain]  Cd Length: 69  Bit Score: 39.26  E-value: 9.34e-06
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
gi 501021304  7 DDCINCDVCEPECPNGAISQGEEIYVIDPNLCTECvGHydepqCQQVCPVDCI 59
Cdd:COG2221  15 EKCIGCGLCVAVCPTGAISLDDGKLVIDEEKCIGC-GA-----CIRVCPTGAI 61
PRK07118 PRK07118
Fe-S cluster domain-containing protein;
9-69 1.51e-05

Fe-S cluster domain-containing protein;


Pssm-ID: 235941 [Multi-domain]  Cd Length: 280  Bit Score: 41.07  E-value: 1.51e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 501021304   9 CINCDVCEPECPNGAISQGEEIYVIDPNLCTECvghydePQCQQVCPVDCIPLDEANVESK 69
Cdd:PRK07118 215 CIGCGKCVKACPAGAITMENNLAVIDQEKCTSC------GKCVEKCPTKAIRILNKPPKVK 269
PorD COG1144
Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta ...
 9-59 1.87e-05

Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta subunit [Energy production and conversion]; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta subunit is part of the Pathway/BioSystem: Pyruvate oxidation


Pssm-ID: 440759 [Multi-domain]  Cd Length: 84  Bit Score: 38.88  E-value: 1.87e-05
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|..
gi 501021304  9 CINCDVCEPECPNGAISQGEE-IYVIDPNLCTECvghydePQCQQVCPVDCI 59
Cdd:COG1144  32 CIGCGLCWIVCPDGAIRVDDGkYYGIDYDYCKGC------GICAEVCPVKAI 77
PRK13795 PRK13795
hypothetical protein; Provisional
 9-56 2.63e-05

hypothetical protein; Provisional


Pssm-ID: 237510 [Multi-domain]  Cd Length: 636  Bit Score: 40.36  E-value: 2.63e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 501021304   9 CINCDVCEPECPNGAISQGEEIYVI--DPNLCTECVghydepQCQQVCPV 56
Cdd:PRK13795 583 CVGCGVCVGACPTGAIRIEEGKRKIsvDEEKCIHCG------KCTEVCPV 626
Nar1 COG4624
Iron only hydrogenase large subunit, C-terminal domain [Energy production and conversion];
7-59 3.50e-05

Iron only hydrogenase large subunit, C-terminal domain [Energy production and conversion];


Pssm-ID: 443663 [Multi-domain]  Cd Length: 450  Bit Score: 40.01  E-value: 3.50e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 501021304   7 DDCINCDVCEPECPNGAISQGEEIYVIDPNLCTECvGhydepQCQQVCPVDCI 59
Cdd:COG4624   91 EKCKNCYPCVRACPVKAIKVDDGKAEIDEEKCISC-G-----QCVAVCPFGAI 137
Fer4_7 pfam12838
4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to ...
 9-58 3.84e-04

4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.


Pssm-ID: 463724 [Multi-domain]  Cd Length: 51  Bit Score: 34.81  E-value: 3.84e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 501021304   9 CINCDVCEPECPNGAIS-------QGEEIYVIDPNLCTECvghydePQCQQVCPVDC 58
Cdd:pfam12838  1 CIGCGACVAACPVGAITldevgekKGTKTVVIDPERCVGC------GACVAVCPTGA 51
NapH COG0348
Polyferredoxin NapH [Energy production and conversion];
2-59 4.35e-04

Polyferredoxin NapH [Energy production and conversion];


Pssm-ID: 440117 [Multi-domain]  Cd Length: 263  Bit Score: 36.96  E-value: 4.35e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 501021304   2 SLKIT---DDCINCDVCEPECP------NGAISQGEEIyvidpnLCTECVGhydepqcqqVCPVDCI 59
Cdd:COG0348  202 TLRVRydrGDCIDCGLCVKVCPmgidirKGEINQSECI------NCGRCID---------ACPKDAI 253
PRK06991 PRK06991
electron transport complex subunit RsxB;
9-61 4.90e-04

electron transport complex subunit RsxB;


Pssm-ID: 235903 [Multi-domain]  Cd Length: 270  Bit Score: 36.70  E-value: 4.90e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 501021304   9 CINCDVCEPECPNGAI-SQGEEIYVIDPNLCTECvghydePQCQQVCPVDCIPL 61
Cdd:PRK06991  87 CIGCTLCMQACPVDAIvGAPKQMHTVLADLCTGC------DLCVPPCPVDCIDM 134
RnfB COG2878
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfB subunit [Energy production and ...
 6-59 6.32e-04

Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfB subunit [Energy production and conversion]; Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfB subunit is part of the Pathway/BioSystem: Na+-translocating Fd:NADH oxidoreductase


Pssm-ID: 442125 [Multi-domain]  Cd Length: 254  Bit Score: 36.51  E-value: 6.32e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 501021304   6 TDDCINCDVCEPECPNGAISQGEE-IYVIDPNLCTECvghydePQCQQVCPVDCI 59
Cdd:COG2878  136 EYGCIGCGDCIKACPFDAIVGAAKgMHTVDEDKCTGC------GLCVEACPVDCI 184
HycB COG1142
Fe-S-cluster-containing hydrogenase component 2 [Energy production and conversion];
5-59 6.47e-04

Fe-S-cluster-containing hydrogenase component 2 [Energy production and conversion];


Pssm-ID: 440757 [Multi-domain]  Cd Length: 138  Bit Score: 35.79  E-value: 6.47e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 501021304   5 ITDDCINCDVCEPECPNGAISQGEEIYVIDPNLCTECVGHYDEPQCQQVCPVDCI 59
Cdd:COG1142   79 DEEKCIGCGLCVLACPFGAITMVGEKSRAVAVKCDLCGGREGGPACVEACPTGAL 133
FDH-O_like cd10560
beta subunit of formate dehydrogenase O (FDH-O) and similar proteins; This subfamily includes ...
 6-63 7.31e-04

beta subunit of formate dehydrogenase O (FDH-O) and similar proteins; This subfamily includes beta subunit of formate dehydrogenase family O (FDH-O), which is highly homologous to formate dehydrogenase N (FDH-N), a member of the DMSO reductase family. In E. coli three formate dehydrogenases are synthesized that are capable of oxidizing formate; Fdh-H, couples formate disproportionation to hydrogen and CO2, and is part of the cytoplasmically oriented formate hydrogenlyase complex, while FDH-N and FDH-O indicate their respective induction after growth with nitrate and oxygen. Little is known about FDH-O, although it shows formate oxidase activity during aerobic growth and is also synthesized during nitrate respiration, similar to FDH-N.


Pssm-ID: 319882 [Multi-domain]  Cd Length: 225  Bit Score: 36.21  E-value: 7.31e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 501021304   6 TDDCINCDVCEPECPNGAISQGEEIYVIDPnlCTECvghYD------EPQCQQVCPVDCI---PLDE 63
Cdd:cd10560  107 PDICNGCGYCVAACPFGVIDRNEETGRAHK--CTLC---YDrlkdglEPACAKACPTGSIqfgPLEE 168
PRK00783 PRK00783
DNA-directed RNA polymerase subunit D; Provisional
 3-59 1.68e-03

DNA-directed RNA polymerase subunit D; Provisional


Pssm-ID: 234837 [Multi-domain]  Cd Length: 263  Bit Score: 35.25  E-value: 1.68e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 501021304   3 LKITDDCINCDVCEPECPNGAIS-QGEEIYVIDPNLCTECvghydePQCQQVCPVDCI 59
Cdd:PRK00783 165 IEVSEDCDECEKCVEACPRGVLElKEGKLVVTDLLNCSLC------KLCERACPGKAI 216
PRK08764 PRK08764
Rnf electron transport complex subunit RnfB;
1-61 2.49e-03

Rnf electron transport complex subunit RnfB;


Pssm-ID: 181550 [Multi-domain]  Cd Length: 135  Bit Score: 34.13  E-value: 2.49e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 501021304   1 MSLKITDDCINCDVCEPECPNGAISQG-EEIYVIDPNLCTECvghydePQCQQVCPVDCIPL 61
Cdd:PRK08764  79 VAWIVEADCIGCTKCIQACPVDAIVGGaKHMHTVIAPLCTGC------ELCVPACPVDCIEL 134
rnfB TIGR01944
electron transport complex, RnfABCDGE type, B subunit; The six subunit complex RnfABCDGE in ...
 7-59 8.33e-03

electron transport complex, RnfABCDGE type, B subunit; The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit. [Energy metabolism, Electron transport]


Pssm-ID: 273887 [Multi-domain]  Cd Length: 165  Bit Score: 32.85  E-value: 8.33e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 501021304    7 DDCINCDVCEPECPNGAISQG-EEIYVIDPNLCTECvghydePQCQQVCPVDCI 59
Cdd:TIGR01944 113 DNCIGCTKCIQACPVDAIVGAaKAMHTVIADECTGC------DLCVEPCPTDCI 160
PRK05888 PRK05888
NADH-quinone oxidoreductase subunit NuoI;
9-59 8.45e-03

NADH-quinone oxidoreductase subunit NuoI;


Pssm-ID: 235637 [Multi-domain]  Cd Length: 164  Bit Score: 32.93  E-value: 8.45e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 501021304   9 CINCDVCEPECPNGAIS-QGEE---------IYVIDPNLCTECvgHYdepqCQQVCPVDCI 59
Cdd:PRK05888  60 CIACKLCAAICPADAITiEAAEredgrrrttRYDINFGRCIFC--GF----CEEACPTDAI 114
MtMvhB_like cd10549
Uncharacterized polyferredoxin-like protein; This family contains uncharacterized ...
 7-75 9.73e-03

Uncharacterized polyferredoxin-like protein; This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction.


Pssm-ID: 319871 [Multi-domain]  Cd Length: 128  Bit Score: 32.37  E-value: 9.73e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 501021304   7 DDCINCDVCEPECPNGAISQGEEI-----YVIDPNLCTECvghydePQCQQVCPVDCIPLDEANVESKDQLMEK 75
Cdd:cd10549    6 EKCIGCGICVKACPTDAIELGPNGaiargPEIDEDKCVFC------GACVEVCPTGAIELTPEGKEYVPKEKEA 73
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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