|
Name |
Accession |
Description |
Interval |
E-value |
| GguB |
NF040906 |
sugar ABC transporter permease; |
25-400 |
0e+00 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 595.21 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 25 NLRESGMLISLVAIMIFFQIVTGGVLMKPLNLTNLVLQNSYIVIMALGMLLIIVTGHIDLSVGSVCGFIGALAAVMMVKW 104
Cdd:NF040906 1 NLRQYGMLIALVAIVVLFQILTGGILLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNW 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 105 GVPFPIAAILCLLAGGIIGAMQGFWVAYFNIPSFIVTLAGMLVFKGLMLAVLGGQSVGPFPVVFQKLSSGFIPEIIGTTG 184
Cdd:NF040906 81 GMPWWLAVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLGGQSIGPFPDGFQKISSGFLPDLFGGTG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 185 gVYLTSLIIGVLLAGFMIWQNVKSRQRHIAHEVETEPFGLFVIKNILFFSAIAYLSLLISMHRGLPNVLIIMAVLIAAYA 264
Cdd:NF040906 161 -LHLLTLLLGVLAAAALVWSQLRGRRRRIKYGLEVEPMALFIAKLVLIAAAILFFTYLLASYRGLPNVLIILGVLILVYS 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 265 FLTNRTVLGRQIYAVGGNRHAAKLSGVKTERLTFLAFVNMGVLAALAGLVFAARLNTATPKAGIGFELDVIAACFIGGAS 344
Cdd:NF040906 240 FVTNRTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGAS 319
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 501039546 345 AYGGVGRVTGAVIGALIMGVMNNGMSILGIGIDYQQVIKGIVLLGAVCIDVYNQKR 400
Cdd:NF040906 320 ASGGVGTVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAVAFDVYNKRK 375
|
|
| XylH |
COG4214 |
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]; |
13-400 |
0e+00 |
|
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443360 [Multi-domain] Cd Length: 393 Bit Score: 511.20 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 13 APASSVGRYLKNNLRESGMLISLVAIMIFFQIVTGGVLMKPLNLTNLVLQNSYIVIMALGMLLIIVTGHIDLSVGSVCGF 92
Cdd:COG4214 9 GAVRSLRRLLGGDLRSLGMIIALVVIWIVFQILTGGTFLTPRNLSNLLLQNSYIGILAIGMVLVILLGHIDLSVGSVSGF 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 93 IGALAAVMMVKWGVPFPIAAILCLLAGGIIGAMQGFWVAYFNIPSFIVTLAGMLVFKGLMLAVLGGQSVGPFPVVFQKLS 172
Cdd:COG4214 89 VGAVAAVLMVNWGLPWWLAILAALLVGALIGAWQGFWVAYVGIPSFIVTLAGMLAFRGLTLLVLGGGTIAPFDPTFQAIG 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 173 SGFIPEIIGTTggvyltSLIIGVLLAGFMIWQNVKSRQRHIAHEVETEPFGLFVIKNILFFSAIAYLSLLISMHRGLPNV 252
Cdd:COG4214 169 NGFLPDILGTL------SWVLGAVAVAAYVALQLRSRRRRRRYGLPVEPLWLFVLKLALLAVLILGAVYLLNSYRGIPIV 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 253 LIIMAVLIAAYAFLTNRTVLGRQIYAVGGNRHAAKLSGVKTERLTFLAFVNMGVLAALAGLVFAARLNTATPKAGIGFEL 332
Cdd:COG4214 243 VLILLVLVVVYTFVLTRTVFGRHIYAVGGNPEAARLSGINVRRVTFSVFVNMGVLAALAGIVFAARLNSATPSAGTGFEL 322
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 501039546 333 DVIAACFIGGASAYGGVGRVTGAVIGALIMGVMNNGMSILGIGIDYQQVIKGIVLLGAVCIDVYNQKR 400
Cdd:COG4214 323 DAIAAAVIGGTSLFGGVGTVYGAVIGALVMGSLNNGMSLLGVDSDWQQIVKGLVLLLAVAFDVLSRRR 390
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
63-394 |
5.94e-69 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 218.43 E-value: 5.94e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 63 NSYIVIMALGMLLIIVTGHIDLSVGSVCGFIGALAAVMMVKWGVPFPIAAILCLLAGGIIGAMQGFWVAYFNIPSFIVTL 142
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 143 AGMLVFKGLMLAVLGGQSVGPFPvvfqklssgfipeiigttggvyltsliigvllagfmiwqnvksrqrhiahevetePF 222
Cdd:cd06579 81 GTMFILRGLALLITGGRPISGLP-------------------------------------------------------PL 105
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 223 GLFVIKNILFFsaiaylsllismhrGLPNVLIIMAVLIAAYAFLTNRTVLGRQIYAVGGNRHAAKLSGVKTERLTFLAFV 302
Cdd:cd06579 106 FSFFLGGGLIL--------------GIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARLSGINVRRVKILAYV 171
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 303 NMGVLAALAGLVFAARLNTATPKAGIGFELDVIAACFIGGASAYGGVGRVTGAVIGALIMGVMNNGMSILGIGIDYQQVI 382
Cdd:cd06579 172 LSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNGLNLLGVSSFWQQIV 251
|
330
....*....|..
gi 501039546 383 KGIVLLGAVCID 394
Cdd:cd06579 252 KGAILLLAVALD 263
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
55-398 |
5.44e-50 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 171.05 E-value: 5.44e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 55 NLTNLVLQNSYIVIMALGMLLIIVTGHIDLSVGSVCGFIGALAAVMmVKWGVPFPIAAILCLLAGGIIGAMQGFWVAYFN 134
Cdd:PRK09512 44 NLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASI-VGIEVNALVAVPAALALGAAIGAVTGVIVAKGK 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 135 IPSFIVTLAGMLVFKGLMLAVLGGQSVgpfpvvfqklSSGFipeiigTTGGVYLTSLIIGVLLagfmiwqnvksrqrhia 214
Cdd:PRK09512 123 VQAFIATLVMMLLLRGVTMVYTDGSPI----------NTGF------TDNADLFGWFGIGRPL----------------- 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 215 hevetepfglfviknilffsaiaylsllismhrGLPNVLIIMAVLIAAYAFLTNRTVLGRQIYAVGGNRHAAKLSGVKTE 294
Cdd:PRK09512 170 ---------------------------------GIPTPVWIMAIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVN 216
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 295 RLTFLAFVNMGVLAALAGLVFAARLNTATPKAGIGFELDVIAACFIGGASAYGGVGRVTGAVIGALIMGVMNNGMSILGI 374
Cdd:PRK09512 217 KVKIIVYALCGLLAALAGIIEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGV 296
|
330 340
....*....|....*....|....
gi 501039546 375 GIDYQQVIKGIVLLGAVCIDVYNQ 398
Cdd:PRK09512 297 SSYYQMIVKAVVILLAVLVDNKKQ 320
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
55-391 |
1.65e-19 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 87.31 E-value: 1.65e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 55 NLTNLVLQNSYIVIMALGMLLII-VTGHIDLSVGSVCGFIGALAAVMMVKWGVPFPIAAILCLLAGGIIGAMQGFWVAYF 133
Cdd:pfam02653 1 NILNILTLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAYVAAMLLNLLGPGLWLALPVGILVGAAVGLLIGILTLRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 134 NIPSFIVTLAGMLVFKGLMLAVLGGQSVGPFPVVFQKLSSGFIPEIIGTTGGVYltsliigvllagfmiwqnvksrqrhi 213
Cdd:pfam02653 81 KINEVIITLLLNLAALGLALFLVTGILGGEGGTSGITGPSGFPGAFLSFAFAFI-------------------------- 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 214 ahevetepfglfviknilffsaiaylsllismhrglpnVLIIMAVLIAAYAFLTnRTVLGRQIYAVGGNRHAAKLSGVKT 293
Cdd:pfam02653 135 --------------------------------------FLLALLLVLALWLLLY-RTKFGRALRAVGENEEAARAAGINV 175
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 294 ERLTFLAFVNMGVLAALAGLVFAARLNTATPK-AGIGFELDVIAACFIGGAsayggvGRVTGAVIGALIMGVMNNGMS-I 371
Cdd:pfam02653 176 KKLKLLTFVISGALAGLAGALLALYTGVVPPSnFGVGLGLDAIAAVVLGGA------GSPIGVVIGSLIIGLVQSLGLgA 249
|
330 340
....*....|....*....|
gi 501039546 372 LGIGIDYQQVIKGIVLLGAV 391
Cdd:pfam02653 250 LGSPPELSLLVLGALLILVL 269
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| GguB |
NF040906 |
sugar ABC transporter permease; |
25-400 |
0e+00 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 595.21 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 25 NLRESGMLISLVAIMIFFQIVTGGVLMKPLNLTNLVLQNSYIVIMALGMLLIIVTGHIDLSVGSVCGFIGALAAVMMVKW 104
Cdd:NF040906 1 NLRQYGMLIALVAIVVLFQILTGGILLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNW 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 105 GVPFPIAAILCLLAGGIIGAMQGFWVAYFNIPSFIVTLAGMLVFKGLMLAVLGGQSVGPFPVVFQKLSSGFIPEIIGTTG 184
Cdd:NF040906 81 GMPWWLAVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLGGQSIGPFPDGFQKISSGFLPDLFGGTG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 185 gVYLTSLIIGVLLAGFMIWQNVKSRQRHIAHEVETEPFGLFVIKNILFFSAIAYLSLLISMHRGLPNVLIIMAVLIAAYA 264
Cdd:NF040906 161 -LHLLTLLLGVLAAAALVWSQLRGRRRRIKYGLEVEPMALFIAKLVLIAAAILFFTYLLASYRGLPNVLIILGVLILVYS 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 265 FLTNRTVLGRQIYAVGGNRHAAKLSGVKTERLTFLAFVNMGVLAALAGLVFAARLNTATPKAGIGFELDVIAACFIGGAS 344
Cdd:NF040906 240 FVTNRTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGAS 319
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 501039546 345 AYGGVGRVTGAVIGALIMGVMNNGMSILGIGIDYQQVIKGIVLLGAVCIDVYNQKR 400
Cdd:NF040906 320 ASGGVGTVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAVAFDVYNKRK 375
|
|
| XylH |
COG4214 |
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]; |
13-400 |
0e+00 |
|
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443360 [Multi-domain] Cd Length: 393 Bit Score: 511.20 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 13 APASSVGRYLKNNLRESGMLISLVAIMIFFQIVTGGVLMKPLNLTNLVLQNSYIVIMALGMLLIIVTGHIDLSVGSVCGF 92
Cdd:COG4214 9 GAVRSLRRLLGGDLRSLGMIIALVVIWIVFQILTGGTFLTPRNLSNLLLQNSYIGILAIGMVLVILLGHIDLSVGSVSGF 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 93 IGALAAVMMVKWGVPFPIAAILCLLAGGIIGAMQGFWVAYFNIPSFIVTLAGMLVFKGLMLAVLGGQSVGPFPVVFQKLS 172
Cdd:COG4214 89 VGAVAAVLMVNWGLPWWLAILAALLVGALIGAWQGFWVAYVGIPSFIVTLAGMLAFRGLTLLVLGGGTIAPFDPTFQAIG 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 173 SGFIPEIIGTTggvyltSLIIGVLLAGFMIWQNVKSRQRHIAHEVETEPFGLFVIKNILFFSAIAYLSLLISMHRGLPNV 252
Cdd:COG4214 169 NGFLPDILGTL------SWVLGAVAVAAYVALQLRSRRRRRRYGLPVEPLWLFVLKLALLAVLILGAVYLLNSYRGIPIV 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 253 LIIMAVLIAAYAFLTNRTVLGRQIYAVGGNRHAAKLSGVKTERLTFLAFVNMGVLAALAGLVFAARLNTATPKAGIGFEL 332
Cdd:COG4214 243 VLILLVLVVVYTFVLTRTVFGRHIYAVGGNPEAARLSGINVRRVTFSVFVNMGVLAALAGIVFAARLNSATPSAGTGFEL 322
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 501039546 333 DVIAACFIGGASAYGGVGRVTGAVIGALIMGVMNNGMSILGIGIDYQQVIKGIVLLGAVCIDVYNQKR 400
Cdd:COG4214 323 DAIAAAVIGGTSLFGGVGTVYGAVIGALVMGSLNNGMSLLGVDSDWQQIVKGLVLLLAVAFDVLSRRR 390
|
|
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
12-400 |
6.88e-85 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 261.19 E-value: 6.88e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 12 KAPASSVGRYLKNNLRESGMLISLVAIMIFFQIVTGGVLmKPLNLTNLVLQNSYIVIMALGMLLIIVTGHIDLSVGSVCG 91
Cdd:COG1172 2 SATTTTARSLLRRLLPELGLLLALVLLLVVFSILSPGFL-SPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 92 FIGALAAVMMVKWGVPFPIAAILCLLAGGIIGAMQGFWVAYFNIPSFIVTLAGMLVFKGLMLAVLGGQSVGPFPVVFQKL 171
Cdd:COG1172 81 LSGVVAALLLVALGLPILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISGLPDAFRAL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 172 SSGFIPeiigttggvyltsliigvllagfmiwqnvksrqrhiahevetepfglfviknilffsaiaylsllismhrGLPN 251
Cdd:COG1172 161 GQGSLL----------------------------------------------------------------------GIPV 170
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 252 VLIIMAVLIAAYAFLTNRTVLGRQIYAVGGNRHAAKLSGVKTERLTFLAFVNMGVLAALAGLVFAARLNTATPKAGIGFE 331
Cdd:COG1172 171 PVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPNAGSGYE 250
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 501039546 332 LDVIAACFIGGASAYGGVGRVTGAVIGALIMGVMNNGMSILGIGIDYQQVIKGIVLLGAVCIDVYNQKR 400
Cdd:COG1172 251 LDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLRRRR 319
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
63-394 |
5.94e-69 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 218.43 E-value: 5.94e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 63 NSYIVIMALGMLLIIVTGHIDLSVGSVCGFIGALAAVMMVKWGVPFPIAAILCLLAGGIIGAMQGFWVAYFNIPSFIVTL 142
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 143 AGMLVFKGLMLAVLGGQSVGPFPvvfqklssgfipeiigttggvyltsliigvllagfmiwqnvksrqrhiahevetePF 222
Cdd:cd06579 81 GTMFILRGLALLITGGRPISGLP-------------------------------------------------------PL 105
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 223 GLFVIKNILFFsaiaylsllismhrGLPNVLIIMAVLIAAYAFLTNRTVLGRQIYAVGGNRHAAKLSGVKTERLTFLAFV 302
Cdd:cd06579 106 FSFFLGGGLIL--------------GIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARLSGINVRRVKILAYV 171
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 303 NMGVLAALAGLVFAARLNTATPKAGIGFELDVIAACFIGGASAYGGVGRVTGAVIGALIMGVMNNGMSILGIGIDYQQVI 382
Cdd:cd06579 172 LSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNGLNLLGVSSFWQQIV 251
|
330
....*....|..
gi 501039546 383 KGIVLLGAVCID 394
Cdd:cd06579 252 KGAILLLAVALD 263
|
|
| COG4158 |
COG4158 |
Predicted ABC-type sugar transport system, permease component [General function prediction ... |
9-399 |
2.66e-51 |
|
Predicted ABC-type sugar transport system, permease component [General function prediction only];
Pssm-ID: 443324 Cd Length: 334 Bit Score: 175.12 E-value: 2.66e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 9 SGSKAPASSVGRYLKNNLRESGMLISLVAIMIFFQIVTGGVLmKPLNLTNLVLQNSYIVIMALGMLLIIVTGHIDLSVGS 88
Cdd:COG4158 10 APSAAPAAARRFRLRSLLQAVGMLPVLILLCIGFELLTPNFL-TVQNLSNIARQASINIVLAAGMTFVILTGGIDLSVGS 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 89 VCGFiGALAAVMMVKWGVPFPIAAILCLLAGGIIGAMQGFWVAYFNIPSFIVTLAGMLVFKGLMLAVLGGQSVgpfpvvf 168
Cdd:COG4158 89 ILAA-SAVVAVLVSLLPGLGLLGIPAALLVGLLFGLINGLLIAFLKLPPFIVTLGSLTALRGAARLLANGTTV------- 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 169 qklssgfipeiigttggvyltsliigvllagfmiwqnvksrqrhiahevetepfglfvIKNILFFSAIAYLSLLismhrG 248
Cdd:COG4158 161 ----------------------------------------------------------FNPDLPFAWIGNGYLL-----G 177
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 249 LPNVLIIMAVLIAAYAFLTNRTVLGRQIYAVGGNRHAAKLSGVKTERLTFLAFVNMGVLAALAGLVFAARLNTATP-KAG 327
Cdd:COG4158 178 IPWLVVIALAVVLASWFILRRTVLGVHIYAVGGNAQAARLTGIKVWRVLLFVYAVSGLLAGLGGVMSAARLYAANGlQLG 257
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 501039546 328 IGFELDVIAACFIGGASAYGGVGRVTGAVIGALIMGVMNNGMSILGIGIDYQQVIKGIVLLGAVCIDVYNQK 399
Cdd:COG4158 258 QGYELDAIAAVILGGTSFVGGIGSIWGTLIGALIIAVLNNGLILLGVSDFWQFIIKGLVIIIAVALDRYRQR 329
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
55-398 |
5.44e-50 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 171.05 E-value: 5.44e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 55 NLTNLVLQNSYIVIMALGMLLIIVTGHIDLSVGSVCGFIGALAAVMmVKWGVPFPIAAILCLLAGGIIGAMQGFWVAYFN 134
Cdd:PRK09512 44 NLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASI-VGIEVNALVAVPAALALGAAIGAVTGVIVAKGK 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 135 IPSFIVTLAGMLVFKGLMLAVLGGQSVgpfpvvfqklSSGFipeiigTTGGVYLTSLIIGVLLagfmiwqnvksrqrhia 214
Cdd:PRK09512 123 VQAFIATLVMMLLLRGVTMVYTDGSPI----------NTGF------TDNADLFGWFGIGRPL----------------- 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 215 hevetepfglfviknilffsaiaylsllismhrGLPNVLIIMAVLIAAYAFLTNRTVLGRQIYAVGGNRHAAKLSGVKTE 294
Cdd:PRK09512 170 ---------------------------------GIPTPVWIMAIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVN 216
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 295 RLTFLAFVNMGVLAALAGLVFAARLNTATPKAGIGFELDVIAACFIGGASAYGGVGRVTGAVIGALIMGVMNNGMSILGI 374
Cdd:PRK09512 217 KVKIIVYALCGLLAALAGIIEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGV 296
|
330 340
....*....|....*....|....
gi 501039546 375 GIDYQQVIKGIVLLGAVCIDVYNQ 398
Cdd:PRK09512 297 SSYYQMIVKAVVILLAVLVDNKKQ 320
|
|
| araH |
PRK11285 |
L-arabinose transporter permease protein; Provisional |
1-400 |
7.30e-47 |
|
L-arabinose transporter permease protein; Provisional
Pssm-ID: 183076 [Multi-domain] Cd Length: 333 Bit Score: 163.31 E-value: 7.30e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 1 MSENIIGRSGSKAPASSVGRYLKNNLRESGMLISLVAIMIFFQIVTGGVLmKPLNLTNLVLQNSYIVIMALGMLLIIVTG 80
Cdd:PRK11285 2 SSVSTSGSGAAAAAPPKSRFSLWRIWDQYGMLVVFAVLFIACSLFVPNFA-SFINMKGLGLAISMIGMVACTMLFCLASG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 81 HIDLSVGSVCGFIGALAAVMMVKWG-VPFPIAAilCLLAGGIIGAMQGFWVAYFNIPSFIVTLAGMLVFKGLMLAVLGGQ 159
Cdd:PRK11285 81 DFDLSVASVVAFAGVVTAVVINATEsLWLGVAA--GLLLGAAVGLVNGFVIARLKINALITTLATMQIVRGLAYIISDGK 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 160 SVGpfpvvfqklssgfipeiigttggvyltsliigvllagfmiwqnvksrqrhiaheVETEPFglFVIKNILFFsaiayl 239
Cdd:PRK11285 159 AVG------------------------------------------------------ISDERF--FALGYANFF------ 176
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 240 sllismhrGLPNVLIIMAVLIAAYAFLTNRTVLGRQIYAVGGNRHAAKLSGVKTERLTFLAFVNMGVLAALAGLVFAARL 319
Cdd:PRK11285 177 --------GVPAPIWLTVACFVVFGFLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLQGLVSALAGVILASRM 248
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 320 NTATPKAGIGFELDVIAACFIGGASAYGGVGRVTGAVIGALIMGVMNNGMSILGIGIDYQQVIKGIVLLGAVCIDVYNQK 399
Cdd:PRK11285 249 TSGQPMTSIGFELIVISACVLGGVSLKGGIAKISGVVAGVLILGTVENAMNLLNISPFYQYVVRGLILLAAVLFDRYKQR 328
|
.
gi 501039546 400 R 400
Cdd:PRK11285 329 A 329
|
|
| PRK09699 |
PRK09699 |
D-allose ABC transporter permease; |
30-394 |
5.75e-43 |
|
D-allose ABC transporter permease;
Pssm-ID: 182035 [Multi-domain] Cd Length: 312 Bit Score: 152.23 E-value: 5.75e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 30 GMLISLVAIMIFFQIVTGGVLMKPLNLTNLVLQNSYIVIMALGMLLIIVTGHIDLSVGSVCGFIGALAAVMMVKWGVPFP 109
Cdd:PRK09699 13 GTFFILAIIVAIFGSLSPEYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKLMLAGVDPFL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 110 IAAILCLLAGGIIGAMQGFWVAYFNIPSFIVTLAGMLVFKGLMLAVLGGQSVGPFPVVFQKLSSGFIpeiigttggvylt 189
Cdd:PRK09699 93 AALIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFSFDFVNFFAASV------------- 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 190 sliigvllagfmiwqnvksrqrhiahevetepfglfviknilffsaiaylsllismhRGLPNVLIIMAVLIAAYAFLTNR 269
Cdd:PRK09699 160 ---------------------------------------------------------IGIPVPVIFSLIVALILWFLTTR 182
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 270 TVLGRQIYAVGGNRHAAKLSGVKTERLTFLAFVNMGVLAALAGLVFAARLNTATPKAGIGFELDVIAACFIGGASAYGGV 349
Cdd:PRK09699 183 MRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAGMGFETYAIASAIIGGTSFFGGK 262
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 501039546 350 GRVTGAVIGALIMGVMNNGMSILGIGIDYQQVIKGIVLLGAVCID 394
Cdd:PRK09699 263 GRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALD 307
|
|
| mglC |
PRK09478 |
galactose/methyl galactoside ABC transporter permease MglC; |
22-394 |
5.57e-42 |
|
galactose/methyl galactoside ABC transporter permease MglC;
Pssm-ID: 181892 [Multi-domain] Cd Length: 336 Bit Score: 150.61 E-value: 5.57e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 22 LKNNLRESGMLISLVAIMIFFqIVTGGVLMKPLNLTNLVLQNSYIVIMALGMLLIIVTGHIDLSVGSVCGFIGALAAVMM 101
Cdd:PRK09478 9 FLTYLKEGGIYVVLLVLLAII-IIQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 102 VKWG-----------VPFPIAAILCLLAGGIIGAMQGFWVAYFNIPSFIVTLAGMLVFKG---LMLAVLGGQSVGPFPVV 167
Cdd:PRK09478 88 QSMDnankvfpelatMPIALVILIVCAIGAVIGLINGLIIAYLNVTPFIATLGTMIIVYGinsLYYDFVGASPISGFDSG 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 168 FQKLSSGFIPeiigttggvyltsliigvllagfmiwqnvksrqrhiahevetepFGLFVIKNILFFSAIAylsllismhr 247
Cdd:PRK09478 168 FSTFAQGFVA--------------------------------------------LGSFRLSYITFYALIA---------- 193
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 248 glpnvliimavlIAAYAFLTNRTVLGRQIYAVGGNRHAAKLSGVKTERLTFLAFVNMGVLAALAGLVFAARLNTATPKAG 327
Cdd:PRK09478 194 ------------VAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMIYALSGVFYAFGGMLEAGRIGSATNNLG 261
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 501039546 328 IGFELDVIAACFIGGASAYGGVGRVTGAVIGALIMGVMNNGMSILGIGIDYQQVIKGIVLLGAVCID 394
Cdd:PRK09478 262 FMYELDAIAACVVGGVSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAIIIFAVALD 328
|
|
| PRK11618 |
PRK11618 |
inner membrane ABC transporter permease protein YjfF; Provisional |
35-364 |
5.09e-35 |
|
inner membrane ABC transporter permease protein YjfF; Provisional
Pssm-ID: 183235 [Multi-domain] Cd Length: 317 Bit Score: 131.23 E-value: 5.09e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 35 LVAIMIFFQIVTGGVLMKP-----LNLTNLVLQNSYIVIMALGMLLIIVTGHIDLSVGSVCGFIGALAAVMMVKWGVPFP 109
Cdd:PRK11618 9 MITIGVFVLGYLFCLVQFPgfastRVICNLLTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKLIGDYGWSPL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 110 IAAILCLLAGGIIGAMQGFWVAYFNIPSFIVTLAGMLVFKGLMLAVlggqsvgpfpvvfqklSSGFIPeiigttggvylt 189
Cdd:PRK11618 89 LAFPLVLVMGAAFGAFMGALIHYLKLPAFIVTLAGMFLARGVSFLV----------------SEESIP------------ 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 190 sliigvllagfmiwqnvksrqrhIAHEvetepfglfviknilFFSAIAYLSLLISMHRGLPNVLIIMAVLIAAYAFLTNR 269
Cdd:PRK11618 141 -----------------------INHP---------------FYDTLSSLAWKLPGGGRLSAMALIMLAVVAIGIFLAHR 182
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 270 TVLGRQIYAVGGNRHAAKLSGVKTERLTFLAFVNMGVLAALAGLVFAARLNTATPKAGIGFELDVIAACFIGGASAYGGV 349
Cdd:PRK11618 183 TRFGNNVYAIGGNATSANLMGIPVRRTTIRIYMLSGFLATLAGIVFSLYTSAGYALAAVGVELDAIAAVVIGGTLLTGGV 262
|
330
....*....|....*
gi 501039546 350 GRVTGAVIGALIMGV 364
Cdd:PRK11618 263 GTVLGTLFGVLIQGL 277
|
|
| PRK15432 |
PRK15432 |
autoinducer 2 ABC transporter permease LsrC; Provisional |
20-394 |
2.68e-29 |
|
autoinducer 2 ABC transporter permease LsrC; Provisional
Pssm-ID: 185330 [Multi-domain] Cd Length: 344 Bit Score: 116.37 E-value: 2.68e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 20 RYLKNNlRESGMLISLVAIMIFFQIVTGGVLmkPLNLTNLVLQNSYIVIM-ALGMLLIIVTGHIDLSVGSVCGfIGALAA 98
Cdd:PRK15432 3 KFIQNN-RELTALLAIVLLFVLLGFLDRQYL--SLQTLTMVFSSAQILILlAIGATLVMLTRNIDVSVGSITG-LCAVLV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 99 VMMVKWGVPFPIAAILCLLAGGIIGAMQGFWVAYFNIPSFIVTLAGMLVFKGLMLAVLGGQSVGPFPVVFQKLSsgfipe 178
Cdd:PRK15432 79 GMLLNAGYSLPVACLATLLLGLLAGFFNGVLVAWLRIPAIVATLGTLGLYRGIMLLWTGGKWIEGLPAELKQLS------ 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 179 iigttggvylTSLIIGVllagfmiwqnvksrqrhiahevetEPFGLFVIknilffsaiaylsllismhrglpnvliimaV 258
Cdd:PRK15432 153 ----------APILLGI------------------------SPIGWLTL------------------------------I 168
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 259 LIAAYAFLTNRTVLGRQIYAVGGNRHAAKLSGVKTERLTFLAFVNMGVLAALAGLVFAARLNTATPKAGIGFELDVIAAC 338
Cdd:PRK15432 169 LILAMAWLLAKTAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFIPNQTGTGLEMKAIAAC 248
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 501039546 339 FIGGASAYGGVGRVTGAVIGALIMGVMNNGMSILGIGIDYQQVIKGIVLLGAVCID 394
Cdd:PRK15432 249 VLGGISLLGGSGTIIGAVLGAYFLTQIDSVLVLLRIPAWWNDFIAGLVLLGVLVFD 304
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
55-391 |
1.65e-19 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 87.31 E-value: 1.65e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 55 NLTNLVLQNSYIVIMALGMLLII-VTGHIDLSVGSVCGFIGALAAVMMVKWGVPFPIAAILCLLAGGIIGAMQGFWVAYF 133
Cdd:pfam02653 1 NILNILTLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAYVAAMLLNLLGPGLWLALPVGILVGAAVGLLIGILTLRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 134 NIPSFIVTLAGMLVFKGLMLAVLGGQSVGPFPVVFQKLSSGFIPEIIGTTGGVYltsliigvllagfmiwqnvksrqrhi 213
Cdd:pfam02653 81 KINEVIITLLLNLAALGLALFLVTGILGGEGGTSGITGPSGFPGAFLSFAFAFI-------------------------- 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 214 ahevetepfglfviknilffsaiaylsllismhrglpnVLIIMAVLIAAYAFLTnRTVLGRQIYAVGGNRHAAKLSGVKT 293
Cdd:pfam02653 135 --------------------------------------FLLALLLVLALWLLLY-RTKFGRALRAVGENEEAARAAGINV 175
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 294 ERLTFLAFVNMGVLAALAGLVFAARLNTATPK-AGIGFELDVIAACFIGGAsayggvGRVTGAVIGALIMGVMNNGMS-I 371
Cdd:pfam02653 176 KKLKLLTFVISGALAGLAGALLALYTGVVPPSnFGVGLGLDAIAAVVLGGA------GSPIGVVIGSLIIGLVQSLGLgA 249
|
330 340
....*....|....*....|
gi 501039546 372 LGIGIDYQQVIKGIVLLGAV 391
Cdd:pfam02653 250 LGSPPELSLLVLGALLILVL 269
|
|
| PRK15038 |
PRK15038 |
autoinducer 2 ABC transporter permease LsrD; |
27-391 |
1.79e-15 |
|
autoinducer 2 ABC transporter permease LsrD;
Pssm-ID: 184998 Cd Length: 330 Bit Score: 76.79 E-value: 1.79e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 27 RESGMLISLVAIMIFFQIVTGGVLMKPLNLTNLVLQNS---YIVIMALGMLLIIVTGHIDLSVGSVCGFIgALAAVMMVK 103
Cdd:PRK15038 3 RRYGWELALAALLVIEILAFGLINPRMLDINVLLFSTSdfiCIGIVALPLTMVIVSGGIDISFGSTIGLC-AIALGVLFQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 104 WGVPFPIAAILCLLAGGIIGAMQGFWVAYFNIPSFIVTLAGMLVFKGLMLAVLGgqsvgpfpvvfqklssgfipeIIGTT 183
Cdd:PRK15038 82 SGVPMPLAILLTLLLGALCGLINAGLIIYTGVNPLVITLGTLYLFGGSALLLSG---------------------MAGAT 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 184 GgvyltsliigvllagfmiwqnvksrqrhiaheveTEPFGLFVIKnilfFSAIAYLSLLismhrGLPNVLIIMAVLIAAY 263
Cdd:PRK15038 141 G----------------------------------YEGIGGFPMA----FTDFANLDVL-----GLPVPLIIFLICLLVF 177
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 264 AFLTNRTVLGRQIYAVGGNRHAAKLSGVKTERLTFLAFVNMGVLAALAGLVFAARLNTATPKAGIGFELDVIAACFIGGA 343
Cdd:PRK15038 178 WLLMHRTHAGRNVFLIGQSPRVALYSAIPVNRTLCALYAMTGLASAIAAVLLVSYFGSARSDLGASFLMPAITAVVLGGA 257
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 501039546 344 SAYGGVGRVTGAVIGALIMGVMNNGMSILGIGIDYQQVIKGIVLLGAV 391
Cdd:PRK15038 258 NIYGGSGSIIGTALAVLLVGYLQQGLQMAGVPNQISSALSGALLIVVV 305
|
|
| TM_PBP1_branched-chain-AA_like |
cd06574 |
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette ... |
226-388 |
1.33e-12 |
|
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.
Pssm-ID: 119320 [Multi-domain] Cd Length: 266 Bit Score: 67.30 E-value: 1.33e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 226 VIKNILFFSAIAYLSLLISMHRGLPNVLIIMAVLIAAYAFLtnRTVLGRQIYAVGGNRHAAKLSGVKTERLTFLAFVNMG 305
Cdd:cd06574 101 LGTRDTLLGLLLLFGISGTLSIPVVLLLIVLLVLFLVIWFL--RTKLGLAMRATGDNPDMARSLGINVDRTRILGLVISN 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 306 VLAALAGLVFAARLNTATPKAGIGFELDVIAACFIGGAS--AYGGVGRVTGAVIGALIMGVMNNGMSILGIGIDYQQVIK 383
Cdd:cd06574 179 ALAALGGALYAQYQGFADVNMGIGTGVIGLAAVIIGGAIvgRRTIKASILGVIIGAILYRIALALALGSGLIPSDLKLIT 258
|
....*
gi 501039546 384 GIVLL 388
Cdd:cd06574 259 AGVIV 263
|
|
| LivH |
COG0559 |
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ... |
64-382 |
4.22e-11 |
|
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440325 [Multi-domain] Cd Length: 290 Bit Score: 63.16 E-value: 4.22e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 64 SYIVIMALGMLLI-IVTGHIDLSVGSVCGFIGALAAVMMVKWGVPFPIAAILCLLAGGIIGAMQGFWVAYF-----NIPS 137
Cdd:COG0559 16 SIYALIALGLTLIfGVMGVINFAHGEFVMLGAYVAYTLATLLGLPLWLALLLAVLVAALLGVLLERLVIRPlrgapPLAL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 138 FIVTLAGMLVFKGLMLAVLGGQSVgPFPVVFQKlssgfipeiigttggvyltsliigvllagfmiwqnvksrqrhiahev 217
Cdd:COG0559 96 LLATIGLSLVLQGLVLLIFGADPR-SFPALLSG----------------------------------------------- 127
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 218 etepfglfviknilffsAIAYLSLLISMHRGLpnVLIIMAVLIAAYAFLTNRTVLGRQIYAVGGNRHAAKLSGVKTERLT 297
Cdd:COG0559 128 -----------------SVELGGVSIPAYRLF--IIVVALVLLAALWLFLRRTRLGLAMRAVAQNREAARLMGINVDRVI 188
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 298 FLAFVNMGVLAALAGLVFAARLnTATPKAGIGFELDVIAACFIggasayGGVGRVTGAVIGALIMGVMNNGMSILgIGID 377
Cdd:COG0559 189 ALTFALGAALAGLAGVLLAPIY-SVSPTMGFLLGLKAFAAVVL------GGLGSIPGAVVGGLLLGLAESLGAAY-LPSG 260
|
....*
gi 501039546 378 YQQVI 382
Cdd:COG0559 261 YKDVV 265
|
|
| TM_PBP1_LivH_like |
cd06582 |
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ... |
64-382 |
3.34e-10 |
|
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119324 [Multi-domain] Cd Length: 272 Bit Score: 60.14 E-value: 3.34e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 64 SYIVIMALGMLLII-VTGHIDLSVGSVCGFIGALAAVMMVKWGVPFPIAAILCLLAGGIIGAMQGFWVAYF----NIPSF 138
Cdd:cd06582 6 AIYALIALGLTLIFgVTGVINFAHGEFYMLGAYVAYTLLVALGLPFWLALLLALLVAALLGVLLERLVLRPlrgaPLLTL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 139 IVTLAGMLVFKGLMLAVLGGQSVGPFPvvfqklssgFIPEIIGTTGGVYLTSLIIGVLLAGfmiwqnvksrqrhiaheve 218
Cdd:cd06582 86 LITFGGLLILLQGLLLIFGGDPRVPPP---------PLLSGSVELGGVTIPPYRLFIIAVA------------------- 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 219 tepfglfviknilffsaiaylsllismhrglpnvliimAVLIAAYAFLTNRTVLGRQIYAVGGNRHAAKLSGVKTERLTF 298
Cdd:cd06582 138 --------------------------------------LVLLAALYLFLRRTRLGRAIRAVAQNPEAARLLGINVRRVFA 179
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 299 LAFVNMGVLAALAGLVFAArLNTATPKAGIGFELDVIAACFIggasayGGVGRVTGAVIGALIMGVMNNgMSILGIGIDY 378
Cdd:cd06582 180 LTFALGAALAGLAGVLLAP-ITGVSPTMGLLLLLKAFAAVVL------GGLGSIPGAVVGGLLLGLAES-LAAAYLSSGY 251
|
....
gi 501039546 379 QQVI 382
Cdd:cd06582 252 KDAV 255
|
|
| NupP |
COG4603 |
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and ... |
253-388 |
8.92e-10 |
|
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and metabolism];
Pssm-ID: 443653 [Multi-domain] Cd Length: 356 Bit Score: 59.75 E-value: 8.92e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 253 LIIMAVLIAAYAFLTNRTVLGRQIYAVGGNRHAAKLSGVKTERLTFLAFVNMGVLAALAGLVFAA----RLNTATPkAGI 328
Cdd:COG4603 200 LLIALLAAVLVWVLLNRTTLGYELRAVGLNPRAARYAGINVKRLIVLAMLISGALAGLAGAVEVLgvqgRLTPGFS-PGY 278
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 501039546 329 GFelDVIAACFIGGASAYggvgrvtGAVIGALIMGVMNNG----MSILGIGIDYQQVIKGIVLL 388
Cdd:COG4603 279 GF--TGIAVALLGRNNPL-------GIILAALLFGALYVGgdamQRALGVPSEIVDVIQGLIIL 333
|
|
| LivM |
COG4177 |
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport ... |
243-391 |
1.42e-09 |
|
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443336 [Multi-domain] Cd Length: 285 Bit Score: 58.55 E-value: 1.42e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 243 ISMHRGLPNVLIIMAVLIAAYAFLTN--RTVLGRQIYAVGGNRHAAKLSGVKTERLTFLAFVNMGVLAALAGLVFAARLN 320
Cdd:COG4177 126 LDLGSPLAFYYLVLALLVLVLLLLRRlvRSRFGRALRAIRENEIAAEALGINVTRYKLLAFVLSAALAGLAGALYAHYVG 205
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 501039546 321 TATPKA-GIGFELDVIAACFIGGasayggVGRVTGAVIGALIMGVMNNGMSILGigiDYQQVIKGIVLLGAV 391
Cdd:COG4177 206 FVSPESfSFLLSIEILLMVVLGG------LGSLLGPVLGAVLLVLLPELLRSLP---EYRLLIFGLLLILVV 268
|
|
| TM_PBP1_LivM_like |
cd06581 |
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ... |
241-391 |
3.93e-09 |
|
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119323 [Multi-domain] Cd Length: 268 Bit Score: 57.07 E-value: 3.93e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 241 LLISMHRGLPNVLIIMAVLIAAYAFLTN--RTVLGRQIYAVGGNRHAAKLSGVKTERLTFLAFVNMGVLAALAGLVFAAR 318
Cdd:cd06581 114 GGLLLSSPLAFYYLVLAVLLLVLLLLRRlvRSPFGRALRAIRENEVAAEALGINVTRYKLLAFALSAALAGLAGALYAHY 193
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 501039546 319 LNTATPKA-GIGFELDVIAACFIggasayGGVGRVTGAVIGALIMGVMNNGMSILGIGidYQQVIKGIVLLGAV 391
Cdd:cd06581 194 LGFVSPESfGFALSIELLLMVVL------GGLGSLLGPVLGAALLVLLPELLRSLGPG--LRLLVFGLLLILVV 259
|
|
| TM_PBP1_transp_TpRbsC_like |
cd06580 |
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. ... |
252-388 |
1.46e-07 |
|
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Pssm-ID: 119322 [Multi-domain] Cd Length: 234 Bit Score: 52.06 E-value: 1.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501039546 252 VLIIMAVLIAAYAFLTNRTVLGRQIYAVGGNRHAAKLSGVKTERLTFLAFVNMGVLAALAGLVFAARLNTATPK---AGI 328
Cdd:cd06580 97 LLLLALLLVILVWLLLYRTRFGLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGLAGAYLVLGVQGRFTEgmsAGY 176
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 501039546 329 GFelDVIAACFIGGasayggvGRVTGAVIGALIMGVMNNGMSIL----GIGIDYQQVIKGIVLL 388
Cdd:cd06580 177 GF--IAIAVALLGR-------WNPLGILLAALLFGALEAGGIALqrsgGVPSELVQVLPGIIVL 231
|
|
| |
