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Conserved domains on  [gi|501073239|ref|WP_012124191|]
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MULTISPECIES: Ig-like domain-containing protein [Cronobacter]

Protein Classification

Ig-like domain-containing protein( domain architecture ID 10492955)

bacterial immunoglobulin (Ig)-like domain-containing protein may be a cell surface protein and may play a vital role in host-pathogen interactions; similar to Bacillus subtilis uncharacterized protein YlqB and Escherichia coli invasin-like protein

CATH:  2.60.40.10
Gene Ontology:  GO:0005515
PubMed:  9417933|33355339|10436082|34986320|7932691|22724448
SCOP:  3000070

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Big_1 pfam02369
Bacterial Ig-like domain (group 1); This family consists of bacterial domains with an Ig-like ...
 18-83 1.29e-07

Bacterial Ig-like domain (group 1); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial surface proteins such as intimins and invasins involved in pathogenicity.


:

Pssm-ID: 460541 [Multi-domain]  Cd Length: 64  Bit Score: 47.93  E-value: 1.29e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 501073239   18 SDGSLAATITAIIHDDTGAPAPdGTTVNWTVTaGGKLSAATSTTDASGAAIVEVTAIASGILTVTA 83
Cdd:pfam02369   1 ADGVDTNTVTATVTDANGNPVP-GATVTFSAS-GGTLSASSGTTDANGQATVTLTSTKAGTVTVTA 64
 
Name Accession Description Interval E-value
Big_1 pfam02369
Bacterial Ig-like domain (group 1); This family consists of bacterial domains with an Ig-like ...
 18-83 1.29e-07

Bacterial Ig-like domain (group 1); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial surface proteins such as intimins and invasins involved in pathogenicity.


Pssm-ID: 460541 [Multi-domain]  Cd Length: 64  Bit Score: 47.93  E-value: 1.29e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 501073239   18 SDGSLAATITAIIHDDTGAPAPdGTTVNWTVTaGGKLSAATSTTDASGAAIVEVTAIASGILTVTA 83
Cdd:pfam02369   1 ADGVDTNTVTATVTDANGNPVP-GATVTFSAS-GGTLSASSGTTDANGQATVTLTSTKAGTVTVTA 64
BID_1 smart00634
Bacterial Ig-like domain (group 1);
5-95 9.37e-07

Bacterial Ig-like domain (group 1);


Pssm-ID: 214751 [Multi-domain]  Cd Length: 92  Bit Score: 46.55  E-value: 9.37e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501073239     5 SVFTVTADKSALPSDGSLAATITAIIHDDTGAPAPdGTTVNWTVTAGGK--LSAATSTTDASGAAIVEVTAIASGILTVT 82
Cdd:smart00634   1 SVTTLTADKDTAVANGSDAITLTATVTDANGNPVA-GQEVTFTTPSGGAltLSKGTATTDANGIATVTLTSTTAGVYTVT 79

                           90
                   ....*....|...
gi 501073239    83 ATTADDDTGKQTS 95
Cdd:smart00634  80 ASLENGSSSVKQV 92
 
Name Accession Description Interval E-value
Big_1 pfam02369
Bacterial Ig-like domain (group 1); This family consists of bacterial domains with an Ig-like ...
 18-83 1.29e-07

Bacterial Ig-like domain (group 1); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial surface proteins such as intimins and invasins involved in pathogenicity.


Pssm-ID: 460541 [Multi-domain]  Cd Length: 64  Bit Score: 47.93  E-value: 1.29e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 501073239   18 SDGSLAATITAIIHDDTGAPAPdGTTVNWTVTaGGKLSAATSTTDASGAAIVEVTAIASGILTVTA 83
Cdd:pfam02369   1 ADGVDTNTVTATVTDANGNPVP-GATVTFSAS-GGTLSASSGTTDANGQATVTLTSTKAGTVTVTA 64
BID_1 smart00634
Bacterial Ig-like domain (group 1);
5-95 9.37e-07

Bacterial Ig-like domain (group 1);


Pssm-ID: 214751 [Multi-domain]  Cd Length: 92  Bit Score: 46.55  E-value: 9.37e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501073239     5 SVFTVTADKSALPSDGSLAATITAIIHDDTGAPAPdGTTVNWTVTAGGK--LSAATSTTDASGAAIVEVTAIASGILTVT 82
Cdd:smart00634   1 SVTTLTADKDTAVANGSDAITLTATVTDANGNPVA-GQEVTFTTPSGGAltLSKGTATTDANGIATVTLTSTTAGVYTVT 79

                           90
                   ....*....|...
gi 501073239    83 ATTADDDTGKQTS 95
Cdd:smart00634  80 ASLENGSSSVKQV 92
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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