NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|501081905|ref|WP_012132493|]
View 

MULTISPECIES: DNA replication terminus site-binding protein [Citrobacter]

Protein Classification

DNA replication terminus site-binding protein( domain architecture ID 10011880)

DNA replication terminus site-binding protein binds to DNA replication terminator sequences to prevent passage of replication forks

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
PRK02951 PRK02951
DNA replication terminus site-binding protein; Provisional
1-309 0e+00

DNA replication terminus site-binding protein; Provisional


:

Pssm-ID: 235090  Cd Length: 309  Bit Score: 552.62  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501081905   1 MARYDLVERLNGTFRQTEHALATLTENLEQQPLLIARVFSLPEVTKEAEHNPLATIAVEQHLGKEAESLALRHYRHLFIQ 80
Cdd:PRK02951   1 MARYDLVERLNTTFRQLEQELAALSQLLEQLPLLAARVFSLPPVEKGDEHDPLNRIEVTQHLGNEALELALRHFRDLFIQ 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501081905  81 QQSENRSSKAAVRLPGVLCYQVDDATQAALENQIQHINQLKTTFERIVTVESGLPSAARFEWVHRHLPGLITLNAYRALT 160
Cdd:PRK02951  81 HQSENRSSKAAVRLPGVLCFSVDNAQQAALVALIQRINALKATLEEIITVESGLPSEARFEFVHRHLPGLITLNAYRTIT 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501081905 161 VIKNPATLRFGWANKHIIKNLRRDEVLAQLEKSLNTPRSVHPWTREEWQARLEREYQDIAALPQQARLKIKRPVKVQPIA 240
Cdd:PRK02951 161 LLHDPASVRFGWANKHIIKNLTRDELLAQLEKSLKSGRAVAPWTREQWQEKLEQEIQDIASLPEDAKLKIKRPVKVQPIA 240
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 501081905 241 RVWYKGQQKQVQHACPTPLIALINTDKGMTVPDIGELLNYDADNVQHRFKPQAQPLRLIIPRLHLYVAD 309
Cdd:PRK02951 241 RVWYAGQQKQVQHACPMPLIALCNEDNGAGVPDLGELLNYDADNIQHRYKPQAQPLRLLIPRLHLYVAD 309
 
Name Accession Description Interval E-value
PRK02951 PRK02951
DNA replication terminus site-binding protein; Provisional
1-309 0e+00

DNA replication terminus site-binding protein; Provisional


Pssm-ID: 235090  Cd Length: 309  Bit Score: 552.62  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501081905   1 MARYDLVERLNGTFRQTEHALATLTENLEQQPLLIARVFSLPEVTKEAEHNPLATIAVEQHLGKEAESLALRHYRHLFIQ 80
Cdd:PRK02951   1 MARYDLVERLNTTFRQLEQELAALSQLLEQLPLLAARVFSLPPVEKGDEHDPLNRIEVTQHLGNEALELALRHFRDLFIQ 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501081905  81 QQSENRSSKAAVRLPGVLCYQVDDATQAALENQIQHINQLKTTFERIVTVESGLPSAARFEWVHRHLPGLITLNAYRALT 160
Cdd:PRK02951  81 HQSENRSSKAAVRLPGVLCFSVDNAQQAALVALIQRINALKATLEEIITVESGLPSEARFEFVHRHLPGLITLNAYRTIT 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501081905 161 VIKNPATLRFGWANKHIIKNLRRDEVLAQLEKSLNTPRSVHPWTREEWQARLEREYQDIAALPQQARLKIKRPVKVQPIA 240
Cdd:PRK02951 161 LLHDPASVRFGWANKHIIKNLTRDELLAQLEKSLKSGRAVAPWTREQWQEKLEQEIQDIASLPEDAKLKIKRPVKVQPIA 240
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 501081905 241 RVWYKGQQKQVQHACPTPLIALINTDKGMTVPDIGELLNYDADNVQHRFKPQAQPLRLIIPRLHLYVAD 309
Cdd:PRK02951 241 RVWYAGQQKQVQHACPMPLIALCNEDNGAGVPDLGELLNYDADNIQHRYKPQAQPLRLLIPRLHLYVAD 309
Ter pfam05472
DNA replication terminus site-binding protein (Ter protein); This family contains several ...
9-306 4.72e-170

DNA replication terminus site-binding protein (Ter protein); This family contains several bacterial Ter proteins. The Ter protein specifically binds to DNA replication terminus sites on the host and plasmid genome and then blocks progress of the DNA replication fork.


Pssm-ID: 428483  Cd Length: 295  Bit Score: 472.97  E-value: 4.72e-170
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501081905    9 RLNGTFRQTEHALATLTENLEQQPLLIARVFSLPEVTKEAEHNPLATIAVEQHLGKEAESLALRHYRHLFIQQQSENRSS 88
Cdd:pfam05472   1 RLNTCFSQLESALAALAQLLEQLPLLVARVYQLPEVEKGDEHEPVEQIEVTQLTGEEALKLALSHFRDLFIHHQSENYSS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501081905   89 KAAVRLPGVLCYQVDDATQAALENQIQHINQLKTTFERIVTVESGLPSAARFEWVHRHLPGLITLNAYRALTVIKNPATL 168
Cdd:pfam05472  81 KAAVRLPGVLCFSVTNAQYAALLALIAEINKLKAEFEEIVTVESGLPRDQRFEFVHRHLPGLITLNAYRTITVLTNPSSV 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501081905  169 RFGWANKHIIKNLRRDEVLAQLEKSLNTPRSVHPWTREEWQARLEREYQDIAALPQQARLKIKRPVKVQPIARVWYKGQQ 248
Cdd:pfam05472 161 RFGWANKHIIKKLTRDQLLEQLEKSLNSPRAVPPYTREQWQALVEREIQDIASLPEDARLKIKRPVKVQPIARVWYAEQQ 240
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 501081905  249 KQVQHACPTPLIALINTDKgmtVPDIGELLNYDADNVQHRFKPQAQPLRLIIPRLHLY 306
Cdd:pfam05472 241 KQVQYACPLPLIALCQEDN---VPKLGELPNYDADNIKHRYRPKAKPLRLLIPRLHLY 295
rep_term_tus TIGR02648
DNA replication terminus site-binding protein; Members of this protein family are found on the ...
10-309 1.51e-169

DNA replication terminus site-binding protein; Members of this protein family are found on the main chromosomes of a number of the Gammaproteobacteria; this model excludes related plasmid proteins, which score between trusted and noise cutoffs. This protein, DNA replication terminus site-binding protein, binds specific DNA sites near the replication terminus to arrest the DNA replication fork. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 131696  Cd Length: 300  Bit Score: 472.00  E-value: 1.51e-169
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501081905   10 LNGTFRQTEHALATLTENLEQQPLLIARVFSLPEVTKEAEHNPLATIAVEQHLGKEAESLALRHYRHLFIQQQSENRSSK 89
Cdd:TIGR02648   1 LNTCFQQLEQKLAQLAQQLEQYKLLAARVFSLPEVEKGTEHNPIERIEVNQHLGNDARSLGLRHFQRLFIHHQSENRSSK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501081905   90 AAVRLPGVLCYQVDDATQAALENQIQHINQLKTTFERIVTVESGLPSAARFEWVHRHLPGLITLNAYRALTVIKNPATLR 169
Cdd:TIGR02648  81 AAVRLPGVLCFSVNNLQYAAAVSLIQEINKLKAELEHIVTVESGLPTEQRFEFVHSHLHGLITLNAYRTLTPLHNPASVR 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501081905  170 FGWANKHIIKNLRRDEVLAQLEKSLNTPRSVHPWTREEWQARLEREYQDIAALPQQARLKIKRPVKVQPIARVWYKGQQK 249
Cdd:TIGR02648 161 FGWANKHIIKNVTRDEILAQLEKSLNSGRAVAPYTREQWQELVEREIQDIAALPEDAVLKIKRPVKVQPIARVWYAEQQK 240
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 501081905  250 QVQHACPTPLIALINTDKGMTVPDIGELLNYDADNVQHRFKPQAQPLRLIIPRLHLYVAD 309
Cdd:TIGR02648 241 QVQHACPTPLIALCQRDNGAGVPKIGELLNYDADNIKHRYKPKAKPLRLIIPRLHLYVED 300
 
Name Accession Description Interval E-value
PRK02951 PRK02951
DNA replication terminus site-binding protein; Provisional
1-309 0e+00

DNA replication terminus site-binding protein; Provisional


Pssm-ID: 235090  Cd Length: 309  Bit Score: 552.62  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501081905   1 MARYDLVERLNGTFRQTEHALATLTENLEQQPLLIARVFSLPEVTKEAEHNPLATIAVEQHLGKEAESLALRHYRHLFIQ 80
Cdd:PRK02951   1 MARYDLVERLNTTFRQLEQELAALSQLLEQLPLLAARVFSLPPVEKGDEHDPLNRIEVTQHLGNEALELALRHFRDLFIQ 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501081905  81 QQSENRSSKAAVRLPGVLCYQVDDATQAALENQIQHINQLKTTFERIVTVESGLPSAARFEWVHRHLPGLITLNAYRALT 160
Cdd:PRK02951  81 HQSENRSSKAAVRLPGVLCFSVDNAQQAALVALIQRINALKATLEEIITVESGLPSEARFEFVHRHLPGLITLNAYRTIT 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501081905 161 VIKNPATLRFGWANKHIIKNLRRDEVLAQLEKSLNTPRSVHPWTREEWQARLEREYQDIAALPQQARLKIKRPVKVQPIA 240
Cdd:PRK02951 161 LLHDPASVRFGWANKHIIKNLTRDELLAQLEKSLKSGRAVAPWTREQWQEKLEQEIQDIASLPEDAKLKIKRPVKVQPIA 240
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 501081905 241 RVWYKGQQKQVQHACPTPLIALINTDKGMTVPDIGELLNYDADNVQHRFKPQAQPLRLIIPRLHLYVAD 309
Cdd:PRK02951 241 RVWYAGQQKQVQHACPMPLIALCNEDNGAGVPDLGELLNYDADNIQHRYKPQAQPLRLLIPRLHLYVAD 309
Ter pfam05472
DNA replication terminus site-binding protein (Ter protein); This family contains several ...
9-306 4.72e-170

DNA replication terminus site-binding protein (Ter protein); This family contains several bacterial Ter proteins. The Ter protein specifically binds to DNA replication terminus sites on the host and plasmid genome and then blocks progress of the DNA replication fork.


Pssm-ID: 428483  Cd Length: 295  Bit Score: 472.97  E-value: 4.72e-170
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501081905    9 RLNGTFRQTEHALATLTENLEQQPLLIARVFSLPEVTKEAEHNPLATIAVEQHLGKEAESLALRHYRHLFIQQQSENRSS 88
Cdd:pfam05472   1 RLNTCFSQLESALAALAQLLEQLPLLVARVYQLPEVEKGDEHEPVEQIEVTQLTGEEALKLALSHFRDLFIHHQSENYSS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501081905   89 KAAVRLPGVLCYQVDDATQAALENQIQHINQLKTTFERIVTVESGLPSAARFEWVHRHLPGLITLNAYRALTVIKNPATL 168
Cdd:pfam05472  81 KAAVRLPGVLCFSVTNAQYAALLALIAEINKLKAEFEEIVTVESGLPRDQRFEFVHRHLPGLITLNAYRTITVLTNPSSV 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501081905  169 RFGWANKHIIKNLRRDEVLAQLEKSLNTPRSVHPWTREEWQARLEREYQDIAALPQQARLKIKRPVKVQPIARVWYKGQQ 248
Cdd:pfam05472 161 RFGWANKHIIKKLTRDQLLEQLEKSLNSPRAVPPYTREQWQALVEREIQDIASLPEDARLKIKRPVKVQPIARVWYAEQQ 240
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 501081905  249 KQVQHACPTPLIALINTDKgmtVPDIGELLNYDADNVQHRFKPQAQPLRLIIPRLHLY 306
Cdd:pfam05472 241 KQVQYACPLPLIALCQEDN---VPKLGELPNYDADNIKHRYRPKAKPLRLLIPRLHLY 295
rep_term_tus TIGR02648
DNA replication terminus site-binding protein; Members of this protein family are found on the ...
10-309 1.51e-169

DNA replication terminus site-binding protein; Members of this protein family are found on the main chromosomes of a number of the Gammaproteobacteria; this model excludes related plasmid proteins, which score between trusted and noise cutoffs. This protein, DNA replication terminus site-binding protein, binds specific DNA sites near the replication terminus to arrest the DNA replication fork. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 131696  Cd Length: 300  Bit Score: 472.00  E-value: 1.51e-169
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501081905   10 LNGTFRQTEHALATLTENLEQQPLLIARVFSLPEVTKEAEHNPLATIAVEQHLGKEAESLALRHYRHLFIQQQSENRSSK 89
Cdd:TIGR02648   1 LNTCFQQLEQKLAQLAQQLEQYKLLAARVFSLPEVEKGTEHNPIERIEVNQHLGNDARSLGLRHFQRLFIHHQSENRSSK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501081905   90 AAVRLPGVLCYQVDDATQAALENQIQHINQLKTTFERIVTVESGLPSAARFEWVHRHLPGLITLNAYRALTVIKNPATLR 169
Cdd:TIGR02648  81 AAVRLPGVLCFSVNNLQYAAAVSLIQEINKLKAELEHIVTVESGLPTEQRFEFVHSHLHGLITLNAYRTLTPLHNPASVR 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501081905  170 FGWANKHIIKNLRRDEVLAQLEKSLNTPRSVHPWTREEWQARLEREYQDIAALPQQARLKIKRPVKVQPIARVWYKGQQK 249
Cdd:TIGR02648 161 FGWANKHIIKNVTRDEILAQLEKSLNSGRAVAPYTREQWQELVEREIQDIAALPEDAVLKIKRPVKVQPIARVWYAEQQK 240
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 501081905  250 QVQHACPTPLIALINTDKGMTVPDIGELLNYDADNVQHRFKPQAQPLRLIIPRLHLYVAD 309
Cdd:TIGR02648 241 QVQHACPTPLIALCQRDNGAGVPKIGELLNYDADNIKHRYKPKAKPLRLIIPRLHLYVED 300
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH