|
Name |
Accession |
Description |
Interval |
E-value |
| CysW |
COG4208 |
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ... |
12-289 |
1.06e-180 |
|
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 443356 Cd Length: 281 Bit Score: 498.87 E-value: 1.06e-180
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 12 AAKPAPVASEGAGVRAVLIGIAVAFLALFLVLPLFAVFLQAFSKGIDAFLDAFREPDAWSAIRLTLTVAAIAVPFNVVFG 91
Cdd:COG4208 4 AARARSATTEPPWVRWLLIGLALLFLALFLVLPLAAVFAEAFSKGWGAYLAALTDPDALSAIRLTLLVAAIAVPLNLVFG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 92 LAASWAIAKFEFPGKSLLITLIDLPFSVSPVVSGMIYVLLFGSQGLFGSWLIDHGIQILFALPGIVLATVFVTFPFVARE 171
Cdd:COG4208 84 VAAAWAITRFEFRGKRLLITLIDLPFSVSPVVAGLIYVLLFGAQGWFGPWLEAHDIKIIFAVPGIVLATIFVTFPFVARE 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 172 LIPLMQEQGTAEEEAALTLGASGLHAFRTVTLPNIRWGLLYSVLLCNARAMGEFGAVSVVSGHIRGLTNTIPLHVEILYN 251
Cdd:COG4208 164 LIPLMQEQGTDEEEAALTLGASGWQTFWRVTLPNIKWGLLYGVILCNARAMGEFGAVSVVSGHIRGETNTLPLHVEILYN 243
|
250 260 270
....*....|....*....|....*....|....*...
gi 501275082 252 EYNFVAAFAVASLLAVLALITLVLKSVLEWRFAGELAH 289
Cdd:COG4208 244 EYNFVAAFAVASLLALLALVTLVLKTLLEWRTARRLAA 281
|
|
| permease_CysW |
TIGR02140 |
sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two ... |
25-282 |
1.73e-129 |
|
sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysT (TIGR02139). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]
Pssm-ID: 162725 Cd Length: 261 Bit Score: 368.64 E-value: 1.73e-129
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 25 VRAVLIGIAVAFLALFLVLPLFAVFLQAFSKGIDAFLDAFREPDAWSAIRLTLTVAAIAVPFNVVFGLAASWAIAKFEFP 104
Cdd:TIGR02140 1 VRYLLISLALGLLFLLLLLPLALIFQEAFEKGFGVFFAAISDPDALSAIKLTLLVALIVVPLNTVFGVCAAWVLTRFQFP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 105 GKSLLITLIDLPFSVSPVVSGMIYVLLFGSQGLFGSWLIDHGIQILFALPGIVLATVFVTFPFVARELIPLMQEQGTAEE 184
Cdd:TIGR02140 81 GKRLLLTIIDLPFSVSPVVAGLIFVLLYGSQGWLGPWLEDLDIKIIFSLPGIVLATMFVTCPFVARELIPVMEEQGTEQE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 185 EAALTLGASGLHAFRTVTLPNIRWGLLYSVLLCNARAMGEFGAVSVVSGHIRGLTNTIPLHVEILYNEYNFVAAFAVASL 264
Cdd:TIGR02140 161 EAALTLGASWWQTFWRVTLPNIKWGLLYGVILCNARAMGEFGAVSVVSGHIRGKTNTLPLHVELLYNEYQSYAAFAAASL 240
|
250
....*....|....*...
gi 501275082 265 LAVLALITLVLKSVLEWR 282
Cdd:TIGR02140 241 LALLALVTLVLKAILERR 258
|
|
| cysW |
PRK11602 |
sulfate/thiosulfate ABC transporter permease CysW; |
26-284 |
7.42e-105 |
|
sulfate/thiosulfate ABC transporter permease CysW;
Pssm-ID: 183225 Cd Length: 283 Bit Score: 306.68 E-value: 7.42e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 26 RAVLIGIAVAFLALFLVLPLFAVFLQAFSKGIDAFLDAFREPDAWSAIRLTLTVAAIAVPFNVVFGLAASWAIAKFEFPG 105
Cdd:PRK11602 19 KWFLIGIGMLVSAFILVVPMIYIFVQAFSKGLMPVLQNLADPDMLHAIWLTVLIALIAVPVNLVFGILLAWLVTRFNFPG 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 106 KSLLITLIDLPFSVSPVVSGMIYVLLFGSQGLFGSWLIDHGIQILFALPGIVLATVFVTFPFVARELIPLMQEQGTAEEE 185
Cdd:PRK11602 99 RQLLLTLLDIPFAVSPVVAGLVYLLFYGSNGPLGGWLDEHNLQLMFSWPGMVLVTIFVTCPFVVRELVPVMLSQGSQEDE 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 186 AALTLGASGLHAFRTVTLPNIRWGLLYSVLLCNARAMGEFGAVSVVSGHIRGLTNTIPLHVEILYNEYNFVAAFAVASLL 265
Cdd:PRK11602 179 AAILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEFGAVSVVSGSIRGETLSLPLQIELLEQDYNTVGSFTAAALL 258
|
250
....*....|....*....
gi 501275082 266 AVLALITLVLKSVLEWRFA 284
Cdd:PRK11602 259 TLMAIITLFLKSMLQWRLE 277
|
|
| 3a0106s02 |
TIGR00969 |
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ... |
29-282 |
5.13e-93 |
|
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]
Pssm-ID: 273370 Cd Length: 271 Bit Score: 276.16 E-value: 5.13e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 29 LIGIAVAFLALFLVLPLFAVFLQAFSKGIDAFLDAFREPDAWSAIRLTLTVAAIAVPFNVVFGLAASWAIAKFEFPGKSL 108
Cdd:TIGR00969 18 SLGIALLYVFLILILPVAALFVQAFSKGLGQFWQNATDPIAVSAYNLTLLMALIAVPLNGVFGLLIAWVLTRYQFPGRKL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 109 LITLIDLPFSVSPVVSGMIYVLLFGSQGLFGSWLIDHGIQILFALPGIVLATVFVTFPFVARELIPLMQEQGTAEEEAAL 188
Cdd:TIGR00969 98 LDALIDLPFALSPVVAGLTLALLYGSNGWLGSWLASFGIQIIFTWPGMALAMIFVSLPFVVREVQPVLEELGTEAEEAAA 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 189 TLGASGLHAFRTVTLPNIRWGLLYSVLLCNARAMGEFGAVSVVSGHIRGLTNTIPLHVEILYNEYNFVAAFAVASLLAVL 268
Cdd:TIGR00969 178 TLGASGWQTFWRVTLPSIRWALLYGVVLTFARALGEFGAVVVVSGNIPGKTLTLPLLIEERLEQYDYPGAYVIAAVLLLV 257
|
250
....*....|....
gi 501275082 269 ALITLVLKSVLEWR 282
Cdd:TIGR00969 258 SLVTLFLINALQAR 271
|
|
| CysU |
COG0555 |
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ... |
28-283 |
3.38e-69 |
|
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440321 [Multi-domain] Cd Length: 268 Bit Score: 215.38 E-value: 3.38e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 28 VLIGIAVAFLALFLVLPLFAVFLQAFSKGIDAFLDAFREPDAWSAIRLTLTVAAIAVPFNVVFGLAASWAIAKFEFPGKS 107
Cdd:COG0555 11 LTLGLTLLYLSLIVLLPLAALVLKAAGLGWAEFWAVLTSPRVLAALKLSLGTALIAALINLVFGLPLAWVLVRYRFPGKR 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 108 LLITLIDLPFSVSPVVSGMIYVLLFGSQGLFGSWLIDHGIQILFALPGIVLATVFVTFPFVARELIPLMQEQGTAEEEAA 187
Cdd:COG0555 91 LVDALVDLPFALPTAVAGIALLLLFGPNGWLGQLLAPLGIKVAFTPLGIVLAQTFVSLPFVVRTVQPVLEELDPELEEAA 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 188 LTLGASGLHAFRTVTLPNIRWGLLYSVLLCNARAMGEFGAVSVVSGHIRGLTNTIPLHVEILYNEYNFVAAFAVASLLAV 267
Cdd:COG0555 171 ATLGASRWQTFRRVILPLLLPALLTGFALAFARALGEFGAVIFIAGNLPMKTEILPLLIYLKLEEGDYAGATAIALVLLL 250
|
250
....*....|....*.
gi 501275082 268 LALITLVLKSVLEWRF 283
Cdd:COG0555 251 ISFLLLLLINLLQRRS 266
|
|
| permease_CysT |
TIGR02139 |
sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two ... |
31-282 |
1.11e-49 |
|
sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]
Pssm-ID: 131194 Cd Length: 265 Bit Score: 165.19 E-value: 1.11e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 31 GIAVAFLALFLVLPLFAVFLQAFSKGIDAFLDAFREPDAWSAIRLTLTVAAIAVPFNVVFGLAASWAIAKFEFPGKSLLI 110
Cdd:TIGR02139 10 GVTLTYLSLIVLLPLAALFLKASQLGWAGFWQIITEPRVLAAYKLSFGTALIAALINAVFGTLLAWVLVRYRFPGKRIVD 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 111 TLIDLPFSVSPVVSGMIYVLLFGSQGLFGSWLIDHGIQILFALPGIVLATVFVTFPFVARELIPLMQEQGTAEEEAALTL 190
Cdd:TIGR02139 90 ALVDLPFALPTAVAGIALATLYSPNGWIGSFLAPLGIKIAFTPLGIVIALVFVSLPFVVRTVQPVLEEIEKELEEAAASL 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 191 GASGLHAFRTVTLPNIRWGLLYSVLLCNARAMGEFGAVSVVSGHIRGLTNTIPLHVEILYNEYNFVAAFAVASLLAVLAL 270
Cdd:TIGR02139 170 GASRWQTFWRVILPALLPALLTGFALAFARAVGEYGSVIFIAGNLPMKTEIAPLLIFQKLEQYDYAGATAIASVMLIISF 249
|
250
....*....|..
gi 501275082 271 ITLVLKSVLEWR 282
Cdd:TIGR02139 250 VILLFINLLQWW 261
|
|
| ModB |
COG4149 |
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ... |
67-284 |
7.71e-49 |
|
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443320 [Multi-domain] Cd Length: 223 Bit Score: 161.75 E-value: 7.71e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 67 PDAWSAIRLTLTVAAIAVPFNVVFGLAASWAIAKFEFPGKSLLITLIDLPFSVSPVVSGMIYVLLFGSQGLFGSWLIDH- 145
Cdd:COG4149 3 PEDWSALWLSLKVALIATLLLLLLGIPLAWWLARTRFRGKGLLEALVTLPLVLPPTVLGFYLLLLFGRNGPLGQLLEELf 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 146 GIQILFALPGIVLATVFVTFPFVARELIPLMQEQGTAEEEAALTLGASGLHAFRTVTLPNIRWGLLYSVLLCNARAMGEF 225
Cdd:COG4149 83 GISLVFTWTGAVLASVVVSLPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAVLAFARALGEF 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 501275082 226 GAVSVVSGHIRGLTNTIPLHVEILYNEYNFVAAFAVASLLAVLALITLVLKSVLEWRFA 284
Cdd:COG4149 163 GATLMFAGNIPGKTQTLPLAIYDAVEAGDYAAAHALSLILLAISFVVLLLLNLLNRRRR 221
|
|
| cysT |
CHL00187 |
sulfate transport protein; Provisional |
32-253 |
1.08e-48 |
|
sulfate transport protein; Provisional
Pssm-ID: 214388 [Multi-domain] Cd Length: 237 Bit Score: 161.72 E-value: 1.08e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 32 IAVAFLALFLVLPLFAVFLQAFSKGIDAFLDAFREPDAWSAIRLTLTVAAIAVPFNVVFGLAASWAIAKFEFPGKSLLIT 111
Cdd:CHL00187 16 ISLSYIIFLLVLPILALLIKASQQPWSDFLQKATEPIALSAYSLTLSMALIAALINGFFGLLIAWVLVRYNFPGKRLLDA 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 112 LIDLPFSVSPVVSGMIYVLLFGSQGLFGSWLIDHGIQILFALPGIVLATVFVTFPFVARELIPLMQEQGTAEEEAALTLG 191
Cdd:CHL00187 96 AVDLPFALPTSVAGLTLATVYGDNGWIGHLLSHLGIQIVFTKLGVLLAMIFVSFPFVVRTIQPVLQEIEKELEEAAWSLG 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 501275082 192 ASGLHAFRTVTLPNIRWGLLYSVLLCNARAMGEFGAVSVVSGHIRGLTNTIPLHVEILYNEY 253
Cdd:CHL00187 176 ASPWQTFWKVIFPPLIPALLTGLALTFSRAIGEYGSIVIISSNIPFKDLVASVLIFQSLEQY 237
|
|
| PRK10971 |
PRK10971 |
sulfate/thiosulfate ABC transporter permease CysT; |
30-283 |
1.09e-46 |
|
sulfate/thiosulfate ABC transporter permease CysT;
Pssm-ID: 182873 Cd Length: 277 Bit Score: 157.99 E-value: 1.09e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 30 IGIAVAFLALFLVLPLFAVFLQAFSKGIDAFLDAFREPDAWSAIRLTLTVAAIAVPFNVVFGLAASWAIAKFEFPGKSLL 109
Cdd:PRK10971 17 LGTSLLFVCLILLLPLSALVMQLSQMSWAQYWEVITNPQVVAAYKVTLLSAFVASIFNAVFGLLMAWILTRYRFPGRTLL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 110 ITLIDLPFSVSPVVSGMIYVLLFGSQGLFGSWLIDHGIQILFALPGIVLATVFVTFPFVARELIPLMQEQGTAEEEAALT 189
Cdd:PRK10971 97 DALMDLPFALPTAVAGLTLASLFSVNGWYGEWLAKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAET 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 190 LGASGLHAFRTVTLPNIRWGLLYSVLLCNARAMGEFGAVSVVSGHIRGLTNTIPLHVEILYNEYNFVAAFAVASLLAVLA 269
Cdd:PRK10971 177 LGATRWQSFRKVVLPELSPALLAGVALSFTRSLGEFGAVIFIAGNIAWKTEVTSLMIFVRLQEFDYPAASAIASVILAAS 256
|
250
....*....|....
gi 501275082 270 LITLVLKSVLEWRF 283
Cdd:PRK10971 257 LLLLFSINTLQSRF 270
|
|
| modB_ABC |
TIGR02141 |
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ... |
74-274 |
3.03e-39 |
|
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]
Pssm-ID: 273993 [Multi-domain] Cd Length: 208 Bit Score: 136.60 E-value: 3.03e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 74 RLTLTVAAIAVPFNVVFGLAASWAIAKFEFPGKSLLITLIDLPFSVSPVVSGMIYVLLFGSQGLFGSWLIDHGIQILFAL 153
Cdd:TIGR02141 1 WLSLKVAVIATLLLLPLGIPVAWLLARSRFRGKPLLEVLVTLPLVLPPTVLGFYLLIAFGPNGPIGKLLELFGISLVFTF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 154 PGIVLATVFVTFPFVARELIPLMQEQGTAEEEAALTLGASGLHAFRTVTLPNIRWGLLYSVLLCNARAMGEFGAVSVVSG 233
Cdd:TIGR02141 81 TGAVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFARALGEFGATLMFAG 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 501275082 234 HIRGLTNTIPL----HVEILYNEYNFVAAFAVASLLAVLALITLV 274
Cdd:TIGR02141 161 NIPGETQTIPLaiydAVESDYELAHQLSLVLLAISLIVLLLVELL 205
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
26-275 |
6.36e-39 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 142.99 E-value: 6.36e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 26 RAVLIGIAVAFLALFLVLPLFAVFLQAFSKGIDAFLDAFREPDAWSAIRLTLTVAAIAVPFNVVFGLAASWAIAKFEFPG 105
Cdd:COG1178 9 PRLLLLLLALLLALLVLLPLLALLLRAFTDGLANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPLAWLLARTDFPG 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 106 KSLLITLIDLPFSVSPVVSGMIYVLLFGSQGLFGSWLIDH-GIQI--LFALPGIVLATVFVTFPFVARELIPLMQEQGTA 182
Cdd:COG1178 89 RRLLRWLLLLPLALPPYVVALAWIALFGPNGLLNTLLRALfGLEPpdIYGLGGIILVLVLFNYPYVYLLLRAALRSIDAS 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 183 EEEAALTLGASGLHAFRTVTLPNIRWGLLYSVLLCNARAMGEFGAVSVVSGHIRGLTntiplhVEI---LYNEYNFVAAF 259
Cdd:COG1178 169 LEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVLGGGYTTLT------TAIyqaWLGDFDLGAAA 242
|
250
....*....|....*.
gi 501275082 260 AVASLLAVLALITLVL 275
Cdd:COG1178 243 ALALVLLLLVLLLLLL 258
|
|
| Mo_ABC_porter |
TIGR01581 |
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ... |
60-275 |
5.21e-38 |
|
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.
Pssm-ID: 130643 Cd Length: 225 Bit Score: 133.68 E-value: 5.21e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 60 FLDAFREPDAWSAIRLTLTVAAIAVPFNVVFGLAASWAIAKFEFPGKSLLITLIDLPFSVSPVVSGMIYVLLFGSQGLFG 139
Cdd:TIGR01581 10 ILSALTDPENIKALRLSLATSLASLLLAVIIGIPTAYVLARVRFPLKKLLDTLLDLPMVLPPLVAGLALLLLFGRNGLLG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 140 SWLIDHGIQILFALPGIVLATVFVTFPFVARELIPLMQEQGTAEEEAALTLGASGLHAFRTVTLPNIRWGLLYSVLLCNA 219
Cdd:TIGR01581 90 PYLEAAGIQVIFSTLGVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLLAGLVLAWA 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 501275082 220 RAMGEFGAVSVVSGHIRGLTNTIPLHVEILYNEYNFVAAFAVASLLAVLALITLVL 275
Cdd:TIGR01581 170 RALGEFGATLMFAGSIQGKTRTLPLAIYLNIQSDNIEAAVASALLLLVIAFLLLLV 225
|
|
| modB |
PRK09421 |
molybdate ABC transporter permease subunit; |
67-288 |
1.08e-37 |
|
molybdate ABC transporter permease subunit;
Pssm-ID: 181841 Cd Length: 229 Bit Score: 133.12 E-value: 1.08e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 67 PDAWSAIRLTLTVAAIAVPFNVVFGLAASWAIAKFEFPGKSLLITLIDLPFSVSPVVSGMIYVLLFGSQGLFGSWLIDH- 145
Cdd:PRK09421 5 DPEWQAVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRRGFIGQWLYEWf 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 146 GIQILFALPGIVLATVFVTFPFVARELIPLMQEQGTAEEEAALTLGASGLHAFRTVTLPNIRWGLLYSVLLCNARAMGEF 225
Cdd:PRK09421 85 GISFAFSWRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLGEF 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 226 GAVSVVSGHIRGLTNTIPLHVeilyneYNFV-------AAFAVASLLAVLALITLVLKSVLEWRFAGELA 288
Cdd:PRK09421 165 GATITFVSNIPGETQTIPSAM------YTLIqtpggesAAARLCIISIAIALASLLLSEWLARRSRKRLG 228
|
|
| PotC |
COG1177 |
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ... |
29-276 |
3.17e-32 |
|
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];
Pssm-ID: 440790 [Multi-domain] Cd Length: 262 Bit Score: 119.83 E-value: 3.17e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 29 LIGIAVAFLALFLVLPLFAVFLQAFSKG-----------IDAFLDAFREPDAWSAIRLTLTVAAIAVPFNVVFGLAASWA 97
Cdd:COG1177 8 LLRLFLALVLLFLYLPILVLVLYSFNDSwfltfppegftLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAALA 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 98 IAKFEFPGKSLLITLIDLPFSVSPVVSGMIYVLLFGSQGLFGSWLidhgiqilfalpGIVLATVFVTFPFVARELIPLMQ 177
Cdd:COG1177 88 LARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLW------------GLILAHVVFTLPFVVLVVLARLQ 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 178 EQGTAEEEAALTLGASGLHAFRTVTLPNIRWGLLYSVLLCNARAMGEFGAVSVVSGhirGLTNTIPLHV--EILYNEYNF 255
Cdd:COG1177 156 GFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAG---PGVTTLPVYIysMIRRGISPE 232
|
250 260
....*....|....*....|.
gi 501275082 256 VAAFAVASLLAVLALITLVLK 276
Cdd:COG1177 233 INALSTLLILLSLLLLLLAER 253
|
|
| PotB |
COG1176 |
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ... |
26-276 |
6.38e-28 |
|
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];
Pssm-ID: 440789 [Multi-domain] Cd Length: 287 Bit Score: 109.08 E-value: 6.38e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 26 RAVLIGIAVAFLALFLVLPLFAVFLQAFSK-----------GIDAFLDAFREPDAWSAIRLTLTVAAIAVPFNVVFGLAA 94
Cdd:COG1176 11 PLLLLLPALLWLLLFFVLPLLLLLVYSFTTrdpyggvvpgfTLENYARLFTDPLYLKVLLRTLWIALLTTLICLLLGYPI 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 95 SWAIAKFEFPGKSLLITLIDLPFSVSPVVSGMIYVLLFGSQGLFGSWL-----IDHGIQILFALPGIVLATVFVTFPFVA 169
Cdd:COG1176 91 AYFLARAPPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRNGLLNSLLlalglIDEPLRLLYTEFAVVIGLVYVYLPFMV 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 170 RELIPLMQEQGTAEEEAALTLGASGLHAFRTVTLPNIRWGLLYSVLLCNARAMGEFGAVSVVSGhirGLTNTIPLHVE-- 247
Cdd:COG1176 171 LPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGG---GKVLMIGNLIYqq 247
|
250 260 270
....*....|....*....|....*....|
gi 501275082 248 -ILYNEYNFVAAFAVASLLAVLALITLVLK 276
Cdd:COG1176 248 fLSALNWPLAAALAVVLLLIVLLVLLLYLR 277
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
24-275 |
9.79e-26 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 106.40 E-value: 9.79e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 24 GVRAVLIGIAVAFLALFLVLPLFAVFLQAFSKGI------DAFLDAFREPDAWSAIRLTLTVAAIAVPFNVVFGLAASWA 97
Cdd:COG1178 285 RWRWLALALCLLLVLLGLLLPLLALLLWSLTKALddnltlDNYRFVLLDPSLLRALLNSLLLALLAALLAVLLALLLAYL 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 98 IAKFEFPGKSLLITLIDLPFSVSPVVSGMIYVLLFGS---QGLFGSWLIdhgiqilfalpgIVLATVFVTFPFVARELIP 174
Cdd:COG1178 365 VRRRRGRLARLLDRLAMLPYAVPGIVLGLGLLLLFNRplpLLLYGTLAI------------LVLAYVVRFLPFALRSLEA 432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 175 LMQEQGTAEEEAALTLGASGLHAFRTVTLPNIRWGLLYSVLLCNARAMGEFGAVSVVSghiRGLTNTIPLHVEILYNEYN 254
Cdd:COG1178 433 ALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLR---PPGFETLAVLIYQLASSGR 509
|
250 260
....*....|....*....|.
gi 501275082 255 FVAAFAVASLLAVLALITLVL 275
Cdd:COG1178 510 YGEAAALALLLVLVSLLPVLL 530
|
|
| UgpA |
COG1175 |
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; |
28-282 |
3.57e-22 |
|
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440788 [Multi-domain] Cd Length: 298 Bit Score: 93.66 E-value: 3.57e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 28 VLIGIAVAFLALFLVLPLFAVFLQAFSK-----------GIDAFLDAFREPDAWSAIRLTLTVAAIAVPFNVVFGLAASW 96
Cdd:COG1175 22 LFLLPALLLLLVFVLYPLLYTLYLSFTDwnllgpppefvGLDNYARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLLLAL 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 97 AIAKfEFPGKSLLITLIDLPFSVSPVVSGMIYVLLFGSQ-GLFGSWLIDHGIQIL-------FALPGIVLATVFVTFPFV 168
Cdd:COG1175 102 LLNR-KLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPDyGLLNALLGALGLEPInwlgdpsLALPAVIIVTVWKGTGFN 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 169 AreLIPLMQEQGTAEE--EAALTLGASGLHAFRTVTLPNIRWGLLYSVLLCNARAMGEFGAVSVV-SGHIRGLTNTIPLH 245
Cdd:COG1175 181 M--LIFLAGLQSIPRElyEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLtGGGPGNSTTTLVLY 258
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 501275082 246 V---EILYNEYNFVAAFAVASLLAVLALITLVLKSVLEWR 282
Cdd:COG1175 259 IyqtAFQQFDFGYASAIAVVLFLIILVLTLLQLRLLRRRE 298
|
|
| PhnU2 |
TIGR03262 |
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ... |
25-233 |
9.43e-22 |
|
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274495 [Multi-domain] Cd Length: 546 Bit Score: 94.75 E-value: 9.43e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 25 VRAVLIGIAVAFLALFLVLPLFAVFLQAFSK------GIDAFLDAFREPDAWSAIRLTLTVAAIAVPFNVVFGLAASWAI 98
Cdd:TIGR03262 2 IARLLLAGMILALLLFLLLPLLALLTKSVYDsdgdfiGLANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 99 AKFEFPGKSLLITLIDLPFSVSPVVSGMIYVLLFGSQGLFGSWLIDHGIqilFALPGIVLATVFVTFPFVARELIPLMQE 178
Cdd:TIGR03262 82 TRSRIPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQGLLKGLLGGFSI---YGFWGIVIGEVFYTFPHALMILVTALSL 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 501275082 179 QGTAEEEAALTLGASGLHAFRTVTLPNIRWGLLYSVLLCNARAMGEFGAVSVVSG 233
Cdd:TIGR03262 159 ADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVPKVIGG 213
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
73-270 |
4.82e-17 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 77.32 E-value: 4.82e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 73 IRLTLTVAAIAVPFNVVFGLAASWAIAKFEFPGKSLLITLIDLPFSVSPVVSGMIYVLLFGSQGLFGswlidhgIQILFA 152
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWG-------ILPGLG 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 153 LPGIVLATVFVtFPFVARELIPLMQEQGTAEEEAALTLGASGLHAFRTVTLPNIRWGLLYSVLLCNARAMGEFGAVSVVS 232
Cdd:cd06261 74 LPALILALLLI-APFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLG 152
|
170 180 190
....*....|....*....|....*....|....*...
gi 501275082 233 GHIRGLTNTIPLHVEILYNEYNFVAAFAVASLLAVLAL 270
Cdd:cd06261 153 GGEAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
|
|
| ABC_perm1 |
NF038017 |
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ... |
76-239 |
3.55e-13 |
|
ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.
Pssm-ID: 411610 [Multi-domain] Cd Length: 184 Bit Score: 66.42 E-value: 3.55e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 76 TLTVAAIAVPFNVVFGLAASWAIAKFEFPGKSLLITLIDLPFSVSPVVSGMIYVLLFGSQGLFGSWlidhgiQILFALPG 155
Cdd:NF038017 1 SLRVSGTATLIAALIGIPLGALLALRRFPGRRLVISLLNTLMGLPPVVVGLIVYLLLSRSGPLGFL------GLLYTPTA 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 156 IVLATVFVTFPFVARELIPLMQEQGTAEEEAALTLGASGLHAFRTVtLPNIRWGLLYSVLLCNARAMGEFGAVSVVSGHI 235
Cdd:NF038017 75 MIIAQAVLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQALWTL-LKEARFALLAAVLAGFGRAISEVGAVMMVGGNI 153
|
....
gi 501275082 236 RGLT 239
Cdd:NF038017 154 RGYT 157
|
|
| thiP |
PRK09433 |
thiamine transporter membrane protein; Reviewed |
31-216 |
4.04e-13 |
|
thiamine transporter membrane protein; Reviewed
Pssm-ID: 181853 [Multi-domain] Cd Length: 525 Bit Score: 69.09 E-value: 4.04e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 31 GIAVAFLALFLVLPLFAVFLQAFSKGIDAFldaFREPDAWSAIRLTLTVAAIAVPFNVVFGLAASWAIAKFEFPGKSLLI 110
Cdd:PRK09433 7 VLAAALLVALALLALLALWLHAPGGDWDAV---WQDSYLWHVLRFSFWQAFLSALLSVLPAIPLARALYRRRFPGRGLLL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 111 TLIDLPFsVSPVVSGMIYVL-LFGSQGLFGSWLIDHGIQILFA---LPGIVLATVFVTFPFVAR------ELIPLMQEQg 180
Cdd:PRK09433 84 RLCAMTL-VLPVLVAVFGLLsVYGRSGWLAQLLQALGLEWPFSiygLQGILLAHVFFNLPLATRlllqalESIPAEQRQ- 161
|
170 180 190
....*....|....*....|....*....|....*.
gi 501275082 181 taeeeAALTLGASGLHAFRTVTLPNIRWGLLYSVLL 216
Cdd:PRK09433 162 -----LAAQLGMRGWQFFRLVEWPYLRRQLPPVAAL 192
|
|
| PRK15050 |
PRK15050 |
2-aminoethylphosphonate transport system permease PhnU; Provisional |
11-230 |
3.31e-11 |
|
2-aminoethylphosphonate transport system permease PhnU; Provisional
Pssm-ID: 237888 [Multi-domain] Cd Length: 296 Bit Score: 62.71 E-value: 3.31e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 11 PAAKPAPVASEGAGVRAVLIGI-AVAFLALFLVLPLFAVFLQAFSK----GIDAFLDAFREPDAWSAIRLTLTVAAIAVP 85
Cdd:PRK15050 8 SAAAHAAAARRRRRLRPLLWLLlPLLVLAPLVVYPLVRVVLQSLTGehglGLATYRAVLGSPDFRGALLTTLQIAFASTA 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 86 FNVVFGLAASWAIAKFEFPGKSLLITLIDLPFSVSPVVSGMIYVLLFGSQGLfgswlIDHGIQILFALP----------- 154
Cdd:PRK15050 88 GCLVLGVLLALVLAFVPFPGASLVGRFIDTFVAFPSFLITLAFTFLYGSAGS-----VNIALQRLFGLEappldflyspg 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 501275082 155 GIVLATVFVTFPFVARELIPLMQEQGTAEEEAALTLGASGLHAFRTVTLPNIRWGLLYSVLLCNARAMGEFGAVSV 230
Cdd:PRK15050 163 GVILAEITFYTPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLTLNEFGIVLF 238
|
|
| UgpE |
COG0395 |
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ... |
25-207 |
2.71e-10 |
|
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440164 [Multi-domain] Cd Length: 282 Bit Score: 59.72 E-value: 2.71e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 25 VRAVLIGIAVAFLALFLVLPLFAVFLQAFSKG----------------IDAFLDAFREPDAWSAIRLTLTVAAIAVPFNV 88
Cdd:COG0395 12 LGRILLYLLLILLALLFLFPLYWMVVTSFKPPaeifsgppsllpseftLENYRAAFTDGPFGRYLLNSLIVAVVSTVLSL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 89 VFGLAASWAIAKFEFPGKSLLITLIdLPFSVSPVVSGMI-YVLLFGSQGLFGSWLidhGIqilfALPGIVLATVFVTFPF 167
Cdd:COG0395 92 LLSSLAAYALARFRFRGRKLLFLLI-LATLMIPGQVLLIpLYLLFRQLGLLNTYW---GL----ILPYLAFGLPFGIFLL 163
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 501275082 168 ------VARELiplmqeqgtaeEEAALTLGASGLHAFRTVTLPNIR 207
Cdd:COG0395 164 rqffrsIPREL-----------EEAARIDGASEFRIFWRIVLPLSK 198
|
|
| COG4132 |
COG4132 |
ABC-type uncharacterized transport system, permease component [General function prediction ... |
34-274 |
2.56e-09 |
|
ABC-type uncharacterized transport system, permease component [General function prediction only];
Pssm-ID: 443307 [Multi-domain] Cd Length: 286 Bit Score: 56.74 E-value: 2.56e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 34 VAFLALFLVLPLFAVFLQAFSKGIDAF-LDAFRE---PDAWSAIRLTLTVAAIAVPFNVVFGLAASWAIAKFEFPG-KSL 108
Cdd:COG4132 22 FLFVLLFLLLPTVWVVIGAFQDDDGGFtLANYAEltsPFYLQAFWNSIWLSLASALIGAVIGLLLAYALRRGGPGWlRRA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 109 LITLIDLPFSVSPVVSGMIYVLLFGSQGLFGSWLIDHGIQI-----LFALPGIVLATVFVTFPFVARELIPLMQEQGTAE 183
Cdd:COG4132 102 VLAFSGVASNFAGVPLAFAFIATLGRNGLVTLLLKQLGIDLydgfnLYSFWGLILVYLYFQIPLMVLLLYPALDGLRREW 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 184 EEAALTLGASGLHAFRTVTLPNIRWGLLYSVLLCNARAMGEF--------GAVSVVSGHIRGLtntipLHVEILYNEyNF 255
Cdd:COG4132 182 REAAALLGASRWQYWRRVALPVLAPSLLGTFLLLFANAFGAYatayaltgGNYNLVPIRIGAL-----ISGDVLLDP-NL 255
|
250
....*....|....*....
gi 501275082 256 VAAFAVAsLLAVLALITLV 274
Cdd:COG4132 256 GAALALG-MIVIMALVMAL 273
|
|
| thiP |
PRK09433 |
thiamine transporter membrane protein; Reviewed |
31-229 |
2.14e-08 |
|
thiamine transporter membrane protein; Reviewed
Pssm-ID: 181853 [Multi-domain] Cd Length: 525 Bit Score: 54.84 E-value: 2.14e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 31 GIAVAFLALFLVLPLFAVFLQAFSKGIdafLDAFREPDAWSAIRLTLTVAAIAVPFNVVFGLAASWAIAKFEFPGKSLLI 110
Cdd:PRK09433 282 GLLIVLALLLLLPPLLAVVVSGLNASL---LRVLAQPALWQALWTSLRIALAAALLAVVLTMMLLWSSRELRLRQRKLAA 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 111 TLID----LPFSVSPVVSGM-IYVLLFGSQGLFgswlidhgiqiLFALPGIVLATVFVTFPFVARELIPLMQEQGTAEEE 185
Cdd:PRK09433 359 QALElsgmLILAMPGIVLATgLFLLLRNTTDLP-----------ASALGIVILTNALMALPYALRVLEPPMRDIAARYGR 427
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 501275082 186 AALTLGASGLHAFRTVTLPNIRWGLLYSVLLCNARAMGEFGAVS 229
Cdd:PRK09433 428 LCQSLGIRGWSRLRLIELRALRRPLAQAFAFACALSLGDFGVIA 471
|
|
| phosphate_pstC |
TIGR02138 |
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ... |
27-283 |
1.93e-07 |
|
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]
Pssm-ID: 273992 [Multi-domain] Cd Length: 295 Bit Score: 51.50 E-value: 1.93e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 27 AVLIGIAVAFLALFLV---LPLFAVFlqafsKGIDAFLDAFREPDAWS---------AIRLTLTVAAIAVPFNVVFGLAA 94
Cdd:TIGR02138 12 AVIIVLVLLLIVLFLLyeaIPAFEKN-----GILNFLTGTVWDPGSGPvqeqygalpLIVGTLITSLIALLIAVPVGIGI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 95 SWAIAKFEFP-GKSLLITLIDLPFSVSPVVSGMIYVLLFGS--QGLFGSWLIDHGIQILF----ALPGIVLATVFVTfPF 167
Cdd:TIGR02138 87 AIFLSEIAPKrVRSVLKPVVELLAGIPSVVYGFWGLFVLVPflKPHFQPFLGSNLGLIPLfggpILTAGIVLAIMIL-PT 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 168 VA---RELIPLMQEqgtAEEEAALTLGASGLHAFRTVTLPNIRWGLLYSVLLCNARAMGEFGAVSVVSGHIRGL------ 238
Cdd:TIGR02138 166 IAsisRDALRAVPR---SYKEASYALGATKWETIRRVILPAARSGIVGAVVLGLGRALGETMAVTMVIGNVFPIsplslf 242
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 501275082 239 --TNTIPLHVEILYNE-----YNFVAAFAVASLLAVLALITLVLKSVLEWRF 283
Cdd:TIGR02138 243 dpGTTITSLIANQFGEasggsVHTSALFALGLVLFVITLLVNILARYIVRRR 294
|
|
| thiP |
TIGR01253 |
thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, ... |
32-279 |
2.07e-07 |
|
thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, permease protein in bacteria. The protein belongs to the larger ABC transport system. It consists of atleast three components: the inner mebrane permease; thiamine binding protein; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). [Transport and binding proteins, Other]
Pssm-ID: 130320 [Multi-domain] Cd Length: 519 Bit Score: 51.84 E-value: 2.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 32 IAVAFLALFLVLPLFAVFLQAfskGIDAFLDAFREPDAWSAIRLTLTVAAIAVPFNVVFGLAASWAIAKFEFPGKSLLIT 111
Cdd:TIGR01253 11 SAISFIIAFAGAAFLAIFALA---GEDDWRAVFQDDYLQHLILFSFGQAFLSALLSIFFAIFLARALFRKPFLGKKALLK 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 112 LIDLPFSVSPVVSGMIYVLLFGSQGLFGSWLIDHGIQILF---ALPGIVLATVFVTFPFVARELIPLMQEQGTAEEEAAL 188
Cdd:TIGR01253 88 LCALTFILPALVAIFGIIGIYGRQGWLATLANLFGLEWQFhiyGLQGILIAHLFFNIPLAAQLFLQALENIPGEQRQLAA 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 189 TLGASGLHAFRTVTLPNIRWGLLYSVLLCNARAMGEFGAVSVVSGHIRGLTNTIPLHVEILYnEYNFVAAFAVASLLAVL 268
Cdd:TIGR01253 168 QLGLQGWHFFKFVEWPVFRQQCLPTAALIFMLCFASFATVLSLGGGPQATTIELAIYQAILF-DFDLAKAALFALLQFVC 246
|
250
....*....|.
gi 501275082 269 ALITLVLKSVL 279
Cdd:TIGR01253 247 CLGLFLLSQRF 257
|
|
| potB |
PRK09497 |
spermidine/putrescine ABC transporter membrane protein; Reviewed |
26-225 |
3.36e-07 |
|
spermidine/putrescine ABC transporter membrane protein; Reviewed
Pssm-ID: 181910 Cd Length: 285 Bit Score: 50.46 E-value: 3.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 26 RAVLIGIAVAFLALFLVLPLFAVFLQAFSKGIDAFLDAFR----------EPDAWSAIRLTLTVAAIAVPFNVVFGLAAS 95
Cdd:PRK09497 8 QNVVIVTIVGWLVLFVFLPNLMIIGTSFLTRDDANFVKMVftldnytrllDPLYAEVLLHSLNMALIATLACLVLGYPFA 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 96 WAIAKFEFPGKSLLITLIDLPFSVSPVVSGMIYVLLFGSQGLFGSWL-----IDHGIQILFALPGIVLATVFVTFPFVAR 170
Cdd:PRK09497 88 WFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLlwlgvIDTPIRIMFTESAVIIGLVYILLPFMVL 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 501275082 171 ELIPLMQEQGTAEEEAALTLGASGLHAFRTVTLPNIRWGLLYSVLLCNARAMGEF 225
Cdd:PRK09497 168 PLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLPAMGMF 222
|
|
| PRK10592 |
PRK10592 |
putrescine transporter subunit: membrane component of ABC superfamily; Provisional |
64-233 |
1.44e-06 |
|
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
Pssm-ID: 182574 Cd Length: 281 Bit Score: 48.70 E-value: 1.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 64 FREPDAWSAIRLTLTVAAIAVPFNVVFGLAASWAIAKF-EFPGKSLLITLIDLPFSVSPVVSGMIYVLLFGSQGLFGSWL 142
Cdd:PRK10592 56 FRDDAMMSAVGLSLTIAACAATAAAILGTIAAVVMVRFgRFRGSNGFAFMITAPLVMPDVITGLSLLLLFVALAHAIGWP 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 143 IDHGIQILFaLPGIVLATVFVTFPFVAReliplMQEQGTAEEEAALTLGASGLHAFRTVTLPNIRWGLLYSVLLCNARAM 222
Cdd:PRK10592 136 ADRGMLTIW-LAHVTFCTAYVAVVISSR-----LRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLAFTLSL 209
|
170
....*....|.
gi 501275082 223 GEFGAVSVVSG 233
Cdd:PRK10592 210 DDLVIASFVSG 220
|
|
| MalG |
COG3833 |
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ... |
29-225 |
3.80e-06 |
|
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];
Pssm-ID: 443045 [Multi-domain] Cd Length: 282 Bit Score: 47.45 E-value: 3.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 29 LIGIAVAFLALFlvlPLFAVFLQAFSKG--------------IDAFLDAFREPDAWSAIRLTLTVAAIAVPFNVVFGLAA 94
Cdd:COG3833 20 LVLIILAIIALF---PILWVVSASFNPGgslyssslipenftLENYKKLFTETPFLRWFLNSLIVAVVTAIISVFLAALA 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 95 SWAIAKFEFPGKSLLITLIdLPFSVSPVVSGMI-YVLLFGSQGLFGSwlidHGIQILFALPGIVLATVFV---TFPFVAR 170
Cdd:COG3833 97 AYAFSRFRFKGRKAGLLAL-LLLQMFPAFLALVaLYLLLSALGLLNT----LLGLILVYLGGAIPFNTWLmkgYFDTIPK 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 501275082 171 ELiplmqeqgtaeEEAALTLGASGLHAFRTVTLPNIRWGLLYSVLLCNARAMGEF 225
Cdd:COG3833 172 EL-----------DEAAKIDGASHFQIFFRIILPLAKPILAVVALLSFIGPWNDF 215
|
|
| PRK10683 |
PRK10683 |
putrescine transporter subunit: membrane component of ABC superfamily; Provisional |
76-275 |
1.29e-04 |
|
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
Pssm-ID: 182646 Cd Length: 317 Bit Score: 42.77 E-value: 1.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 76 TLTVAAIAVPFNVVFGLAASWAIAKFEFPGKSLLITLIDLPFSVSPVVSGMIYVLLFGSQGL---FGSWL--IDHGIQIL 150
Cdd:PRK10683 102 SLQVAAISTLCCLLIGYPLAWAVAHSKPSTRNILLLLVILPSWTSFLIRVYAWMGILKNNGVlnnFLLWLgvIDQPLTIL 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 151 FALPGIVLATVFVTFPFVARELIPLMQEQGTAEEEAALTLGASGLHAFRTVTLPNIRWGLLYSVLLCNARAMGEFgavsv 230
Cdd:PRK10683 182 HTNLAVYIGIVYAYLPFMVLPIYTALTRIDYSLVEAALDLGARPLKTFFSVIVPLTKGGIIAGSMLVFIPAVGEF----- 256
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 501275082 231 VSGHIRGLTNTIPLHvEILYNEYNFVAAFAVASLLAVLALITLVL 275
Cdd:PRK10683 257 VIPELLGGPDSIMIG-RVLWQEFFNNRDWPVASAVAIIMLLLLIV 300
|
|
| potC |
PRK09500 |
spermidine/putrescine ABC transporter membrane protein; Reviewed |
76-204 |
8.19e-03 |
|
spermidine/putrescine ABC transporter membrane protein; Reviewed
Pssm-ID: 236542 [Multi-domain] Cd Length: 256 Bit Score: 36.89 E-value: 8.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501275082 76 TLTVAAIAVPFNVVFGLAASWAIAKFEFPGKSLLITLIdlpFSV--SP----VVSGMIYVLLFGSQGLFGSWLIDHgiqI 149
Cdd:PRK09500 62 SLTMAVFSATFATLIGSLTAVALYRYRFRGKKFVSGML---FVVmmSPdivmAISLLVLFMLLGIQLGFWSLLFAH---I 135
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 501275082 150 LFALPgIVLATVFVTFPFVARELIplmqeqgtaeeEAALTLGASGLHAFRTVTLP 204
Cdd:PRK09500 136 TFCLP-FVVVTVYSRLKGFDVRML-----------EAAKDLGASEFTILRKIILP 178
|
|
| |
