|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11618 |
PRK11618 |
inner membrane ABC transporter permease protein YjfF; Provisional |
12-327 |
8.75e-161 |
|
inner membrane ABC transporter permease protein YjfF; Provisional
Pssm-ID: 183235 [Multi-domain] Cd Length: 317 Bit Score: 452.87 E-value: 8.75e-161
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 12 VDPRTLPIAVTILLFCALFGFGSVMYTGFFSWQVLLDLLVDNAFLLIVAIGMTFVIVSGGIDLSVGSVVALTTIVEAVLS 91
Cdd:PRK11618 1 MIKRNLPLMITIGVFVLGYLFCLVQFPGFASTRVICNLLTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKLI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 92 EHLHWPVWVILPTVLLMGTVFGAVQGALIHFFRLQAFIVTLAGMFFARGLCFLITTQSITITDPTFQKISAFRLDI-GVG 170
Cdd:PRK11618 81 GDYGWSPLLAFPLVLVMGAAFGAFMGALIHYLKLPAFIVTLAGMFLARGVSFLVSEESIPINHPFYDTLSSLAWKLpGGG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 171 SVTANVLIAFVTLLAAIYVAHFTRFGRNVYAIGGNARSALLMGLPVAHTRIGVYALSGFCSALGGAVFTFYVLSGYGLQG 250
Cdd:PRK11618 161 RLSAMALIMLAVVAIGIFLAHRTRFGNNVYAIGGNATSANLMGIPVRRTTIRIYMLSGFLATLAGIVFSLYTSAGYALAA 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 501395122 251 QGMELDAIAATVIGGTLLTGGVGYVIGSLFGVGILGTIQTLITFDGTLSSWWTRIVIGALLCAFCLLQRLIERHAKS 327
Cdd:PRK11618 241 VGVELDAIAAVVIGGTLLTGGVGTVLGTLFGVLIQGLIQTYITFDGTLSSWWTKIVIGILLFVFIALQRGLTVLAEN 317
|
|
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
15-326 |
5.86e-83 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 255.03 E-value: 5.86e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 15 RTLPIAVTILLFCALFGFGSVMYTGFFSWQVLLDLLVDNAFLLIVAIGMTFVIVSGGIDLSVGSVVALTTIVEAVLSEHL 94
Cdd:COG1172 14 RLLPELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVVAALLLVAL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 95 HWPVWVILPTVLLMGTVFGAVQGALIHFFRLQAFIVTLAGMFFARGLCFLIT-TQSITITDPTFQKISAFRldigVGSVT 173
Cdd:COG1172 94 GLPILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTgGRPISGLPDAFRALGQGS----LLGIP 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 174 ANVLIAFVTLLAAIYVAHFTRFGRNVYAIGGNARSALLMGLPVAHTRIGVYALSGFCSALGGAVFTFYVLSGYGLQGQGM 253
Cdd:COG1172 170 VPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPNAGSGY 249
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 501395122 254 ELDAIAATVIGGTLLTGGVGYVIGSLFGVGILGTIQTLITFDGtLSSWWTRIVIGALLCAFCLLQRLIERHAK 326
Cdd:COG1172 250 ELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLG-VSSYWQQIVKGAIILLAVLLDRLRRRRRA 321
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
53-318 |
3.07e-64 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 204.95 E-value: 3.07e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 53 NAFLLIVAIGMTFVIVSGGIDLSVGSVVALTTIVEAVLSEHLHWPVWVILPTVLLMGTVFGAVQGALIHFFRLQAFIVTL 132
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 133 AGMFFARGLCFLIT-TQSITITDPTFQKISAFRldiGVGSVTANVLIAFVTLLAAIYVAHFTRFGRNVYAIGGNARSALL 211
Cdd:cd06579 81 GTMFILRGLALLITgGRPISGLPPLFSFFLGGG---LILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 212 MGLPVAHTRIGVYALSGFCSALGGAVFTFYVLSGYGLQGQGMELDAIAATVIGGTLLTGGVGYVIGSLFGVGILGTIQTL 291
Cdd:cd06579 158 SGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNG 237
|
250 260
....*....|....*....|....*..
gi 501395122 292 ITFDGtLSSWWTRIVIGALLCAFCLLQ 318
Cdd:cd06579 238 LNLLG-VSSFWQQIVKGAILLLAVALD 263
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
49-263 |
2.16e-35 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 132.97 E-value: 2.16e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 49 LLVDNAFLLIVAIGMTFVIVSGGIDLSVGSVVALTTIVEAVLSEHLHWPVWVILPTVLLMGTVFGAVQGALIHFFRLQAF 128
Cdd:NF040906 35 LILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNWGMPWWLAVLLCLLVGALIGAWQGFWVAYVGIPAF 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 129 IVTLAGMFFARGLCFLITT-QSITITDPTFQKISA--------------FRLDIGVGSVTA------------------- 174
Cdd:NF040906 115 IVTLAGMLVFRGLTLVVLGgQSIGPFPDGFQKISSgflpdlfggtglhlLTLLLGVLAAAAlvwsqlrgrrrrikyglev 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 175 ---------NVLIAFVTL---------------------LAAIY--VAHFTRFGRNVYAIGGNARSALLMGLPVAHTRIG 222
Cdd:NF040906 195 epmalfiakLVLIAAAILfftyllasyrglpnvliilgvLILVYsfVTNRTVIGRHIYAVGGNEKAAKLSGIKTKRVTFL 274
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 501395122 223 VYALSGFCSALGGAVFTFYVLSGYGLQGQGMELDAIAATVI 263
Cdd:NF040906 275 VFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFI 315
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
46-311 |
2.86e-24 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 100.41 E-value: 2.86e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 46 LLDLLVDNAFLLIVAIGMTFVI-VSGGIDLSVGSVVALTTIVEAVLSEHLHWPVWVILPTVLLMGTVFGAVQGALIHFFR 124
Cdd:pfam02653 2 ILNILTLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAYVAAMLLNLLGPGLWLALPVGILVGAAVGLLIGILTLRLK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 125 LQAFIVTLAGMFFARGLCFLITTQSITI--TDPTFQKISAFRLDIGVGSVTANVLIAFVTLLAAIYVAHFTRFGRNVYAI 202
Cdd:pfam02653 82 INEVIITLLLNLAALGLALFLVTGILGGegGTSGITGPSGFPGAFLSFAFAFIFLLALLLVLALWLLLYRTKFGRALRAV 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 203 GGNARSALLMGLPVAHTRIGVYALSGFCSALGGAVFTFYVLSGYGLQ-GQGMELDAIAATVIGGTLLtggvgyVIGSLFG 281
Cdd:pfam02653 162 GENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPSNfGVGLGLDAIAAVVLGGAGS------PIGVVIG 235
|
250 260 270
....*....|....*....|....*....|
gi 501395122 282 VGILGTIQTLITFDGTLSSWWTRIVIGALL 311
Cdd:pfam02653 236 SLIIGLVQSLGLGALGSPPELSLLVLGALL 265
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11618 |
PRK11618 |
inner membrane ABC transporter permease protein YjfF; Provisional |
12-327 |
8.75e-161 |
|
inner membrane ABC transporter permease protein YjfF; Provisional
Pssm-ID: 183235 [Multi-domain] Cd Length: 317 Bit Score: 452.87 E-value: 8.75e-161
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 12 VDPRTLPIAVTILLFCALFGFGSVMYTGFFSWQVLLDLLVDNAFLLIVAIGMTFVIVSGGIDLSVGSVVALTTIVEAVLS 91
Cdd:PRK11618 1 MIKRNLPLMITIGVFVLGYLFCLVQFPGFASTRVICNLLTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKLI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 92 EHLHWPVWVILPTVLLMGTVFGAVQGALIHFFRLQAFIVTLAGMFFARGLCFLITTQSITITDPTFQKISAFRLDI-GVG 170
Cdd:PRK11618 81 GDYGWSPLLAFPLVLVMGAAFGAFMGALIHYLKLPAFIVTLAGMFLARGVSFLVSEESIPINHPFYDTLSSLAWKLpGGG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 171 SVTANVLIAFVTLLAAIYVAHFTRFGRNVYAIGGNARSALLMGLPVAHTRIGVYALSGFCSALGGAVFTFYVLSGYGLQG 250
Cdd:PRK11618 161 RLSAMALIMLAVVAIGIFLAHRTRFGNNVYAIGGNATSANLMGIPVRRTTIRIYMLSGFLATLAGIVFSLYTSAGYALAA 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 501395122 251 QGMELDAIAATVIGGTLLTGGVGYVIGSLFGVGILGTIQTLITFDGTLSSWWTRIVIGALLCAFCLLQRLIERHAKS 327
Cdd:PRK11618 241 VGVELDAIAAVVIGGTLLTGGVGTVLGTLFGVLIQGLIQTYITFDGTLSSWWTKIVIGILLFVFIALQRGLTVLAEN 317
|
|
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
15-326 |
5.86e-83 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 255.03 E-value: 5.86e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 15 RTLPIAVTILLFCALFGFGSVMYTGFFSWQVLLDLLVDNAFLLIVAIGMTFVIVSGGIDLSVGSVVALTTIVEAVLSEHL 94
Cdd:COG1172 14 RLLPELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVVAALLLVAL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 95 HWPVWVILPTVLLMGTVFGAVQGALIHFFRLQAFIVTLAGMFFARGLCFLIT-TQSITITDPTFQKISAFRldigVGSVT 173
Cdd:COG1172 94 GLPILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTgGRPISGLPDAFRALGQGS----LLGIP 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 174 ANVLIAFVTLLAAIYVAHFTRFGRNVYAIGGNARSALLMGLPVAHTRIGVYALSGFCSALGGAVFTFYVLSGYGLQGQGM 253
Cdd:COG1172 170 VPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPNAGSGY 249
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 501395122 254 ELDAIAATVIGGTLLTGGVGYVIGSLFGVGILGTIQTLITFDGtLSSWWTRIVIGALLCAFCLLQRLIERHAK 326
Cdd:COG1172 250 ELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLG-VSSYWQQIVKGAIILLAVLLDRLRRRRRA 321
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
53-318 |
3.07e-64 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 204.95 E-value: 3.07e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 53 NAFLLIVAIGMTFVIVSGGIDLSVGSVVALTTIVEAVLSEHLHWPVWVILPTVLLMGTVFGAVQGALIHFFRLQAFIVTL 132
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 133 AGMFFARGLCFLIT-TQSITITDPTFQKISAFRldiGVGSVTANVLIAFVTLLAAIYVAHFTRFGRNVYAIGGNARSALL 211
Cdd:cd06579 81 GTMFILRGLALLITgGRPISGLPPLFSFFLGGG---LILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 212 MGLPVAHTRIGVYALSGFCSALGGAVFTFYVLSGYGLQGQGMELDAIAATVIGGTLLTGGVGYVIGSLFGVGILGTIQTL 291
Cdd:cd06579 158 SGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNG 237
|
250 260
....*....|....*....|....*..
gi 501395122 292 ITFDGtLSSWWTRIVIGALLCAFCLLQ 318
Cdd:cd06579 238 LNLLG-VSSFWQQIVKGAILLLAVALD 263
|
|
| XylH |
COG4214 |
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]; |
13-263 |
1.97e-46 |
|
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443360 [Multi-domain] Cd Length: 393 Bit Score: 162.59 E-value: 1.97e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 13 DPRTLPIAVTILLFCALFGFgsvmYTG--FFSWQVLLDLLVDNAFLLIVAIGMTFVIVSGGIDLSVGSVVALTTIVEAVL 90
Cdd:COG4214 21 DLRSLGMIIALVVIWIVFQI----LTGgtFLTPRNLSNLLLQNSYIGILAIGMVLVILLGHIDLSVGSVSGFVGAVAAVL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 91 SEHLHWPVWVILPTVLLMGTVFGAVQGALIHFFRLQAFIVTLAGMFFARGLCFLIT-TQSITITDPTFQKISAFRLD--- 166
Cdd:COG4214 97 MVNWGLPWWLAILAALLVGALIGAWQGFWVAYVGIPSFIVTLAGMLAFRGLTLLVLgGGTIAPFDPTFQAIGNGFLPdil 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 167 ------IGVGSVTA----------------------------NVLIAFVTLLAAIYVAHF-------------------- 192
Cdd:COG4214 177 gtlswvLGAVAVAAyvalqlrsrrrrrryglpveplwlfvlkLALLAVLILGAVYLLNSYrgipivvlillvlvvvytfv 256
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 501395122 193 ---TRFGRNVYAIGGNARSALLMGLPVAHTRIGVYALSGFCSALGGAVFTFYVLSGYGLQGQGMELDAIAATVI 263
Cdd:COG4214 257 ltrTVFGRHIYAVGGNPEAARLSGINVRRVTFSVFVNMGVLAALAGIVFAARLNSATPSAGTGFELDAIAAAVI 330
|
|
| COG4158 |
COG4158 |
Predicted ABC-type sugar transport system, permease component [General function prediction ... |
15-325 |
8.54e-45 |
|
Predicted ABC-type sugar transport system, permease component [General function prediction only];
Pssm-ID: 443324 Cd Length: 334 Bit Score: 157.01 E-value: 8.54e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 15 RTLPIAVTILLFCALFgfgSVMYTGFFSWQVLLDLLVDNAFLLIVAIGMTFVIVSGGIDLSVGSVVALTTIVEAVLSEHL 94
Cdd:COG4158 28 QAVGMLPVLILLCIGF---ELLTPNFLTVQNLSNIARQASINIVLAAGMTFVILTGGIDLSVGSILAASAVVAVLVSLLP 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 95 HWPvWVILPTVLLMGTVFGAVQGALIHFFRLQAFIVTLAGMFFARGLCFLITT-QSITITDPTFQKISAFRLdigvGSVT 173
Cdd:COG4158 105 GLG-LLGIPAALLVGLLFGLINGLLIAFLKLPPFIVTLGSLTALRGAARLLANgTTVFNPDLPFAWIGNGYL----LGIP 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 174 ANVLIAFVTLLAAIYVAHFTRFGRNVYAIGGNARSALLMGLPVAHTRIGVYALSGFCSALGGAVFTFYVLSGYGLQ-GQG 252
Cdd:COG4158 180 WLVVIALAVVLASWFILRRTVLGVHIYAVGGNAQAARLTGIKVWRVLLFVYAVSGLLAGLGGVMSAARLYAANGLQlGQG 259
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 501395122 253 MELDAIAATVIGGTLLTGGVGYVIGSLFGVGILGTIQTLITFDGtLSSWWTRIVIGALLCAFCLLQRLIERHA 325
Cdd:COG4158 260 YELDAIAAVILGGTSFVGGIGSIWGTLIGALIIAVLNNGLILLG-VSDFWQFIIKGLVIIIAVALDRYRQRGS 331
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
34-286 |
1.44e-39 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 142.55 E-value: 1.44e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 34 SVMYTGFFSWQVLLDLLVDNAFLLIVAIGMTFVIVSGGIDLSVGSVVALTTIVEAVLSEhLHWPVWVILPTVLLMGTVFG 113
Cdd:PRK09512 33 STLSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIVG-IEVNALVAVPAALALGAAIG 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 114 AVQGALIHFFRLQAFIVTLAGMFFARGLCFLITTQSITITDptFQKISAFRLDIGVG---SVTANVLIAFVTLLAAIYVA 190
Cdd:PRK09512 112 AVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGSPINTG--FTDNADLFGWFGIGrplGIPTPVWIMAIVFLAAWYML 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 191 HFTRFGRNVYAIGGNARSALLMGLPVAHTRIGVYALSGFCSALGGAVFTFYVLSGYGLQGQGMELDAIAATVIGGTLLTG 270
Cdd:PRK09512 190 HHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGIIEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAG 269
|
250
....*....|....*.
gi 501395122 271 GVGYVIGSLFGVGILG 286
Cdd:PRK09512 270 GKGRIVGTLIGALILG 285
|
|
| araH |
PRK11285 |
L-arabinose transporter permease protein; Provisional |
23-328 |
1.53e-36 |
|
L-arabinose transporter permease protein; Provisional
Pssm-ID: 183076 [Multi-domain] Cd Length: 333 Bit Score: 134.81 E-value: 1.53e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 23 ILLFCALFGFGSVMYTGFFSWQVLLDLLVDNAFLLIVAIGMTFVIVSGGIDLSVGSVVALTTIVEAVLSEHLHwPVWVIL 102
Cdd:PRK11285 33 LVVFAVLFIACSLFVPNFASFINMKGLGLAISMIGMVACTMLFCLASGDFDLSVASVVAFAGVVTAVVINATE-SLWLGV 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 103 PTVLLMGTVFGAVQGALIHFFRLQAFIVTLAGMFFARGLCFLITT-QSITITDPTFqkisafrLDIGVGS---VTANVLI 178
Cdd:PRK11285 112 AAGLLLGAAVGLVNGFVIARLKINALITTLATMQIVRGLAYIISDgKAVGISDERF-------FALGYANffgVPAPIWL 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 179 AFVTLLAAIYVAHFTRFGRNVYAIGGNARSALLMGLPVAHTRIGVYALSGFCSALGGAVFTFYVLSGYGLQGQGMELDAI 258
Cdd:PRK11285 185 TVACFVVFGFLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLQGLVSALAGVILASRMTSGQPMTSIGFELIVI 264
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 259 AATVIGGTLLTGGVGYVIGSLFGVGILGTIQTLITFDgTLSSWWTRIVIGALLCAFCLLQRLIERHAKSV 328
Cdd:PRK11285 265 SACVLGGVSLKGGIAKISGVVAGVLILGTVENAMNLL-NISPFYQYVVRGLILLAAVLFDRYKQRAKRTV 333
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
49-263 |
2.16e-35 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 132.97 E-value: 2.16e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 49 LLVDNAFLLIVAIGMTFVIVSGGIDLSVGSVVALTTIVEAVLSEHLHWPVWVILPTVLLMGTVFGAVQGALIHFFRLQAF 128
Cdd:NF040906 35 LILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNWGMPWWLAVLLCLLVGALIGAWQGFWVAYVGIPAF 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 129 IVTLAGMFFARGLCFLITT-QSITITDPTFQKISA--------------FRLDIGVGSVTA------------------- 174
Cdd:NF040906 115 IVTLAGMLVFRGLTLVVLGgQSIGPFPDGFQKISSgflpdlfggtglhlLTLLLGVLAAAAlvwsqlrgrrrrikyglev 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 175 ---------NVLIAFVTL---------------------LAAIY--VAHFTRFGRNVYAIGGNARSALLMGLPVAHTRIG 222
Cdd:NF040906 195 epmalfiakLVLIAAAILfftyllasyrglpnvliilgvLILVYsfVTNRTVIGRHIYAVGGNEKAAKLSGIKTKRVTFL 274
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 501395122 223 VYALSGFCSALGGAVFTFYVLSGYGLQGQGMELDAIAATVI 263
Cdd:NF040906 275 VFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFI 315
|
|
| PRK09699 |
PRK09699 |
D-allose ABC transporter permease; |
23-323 |
1.23e-27 |
|
D-allose ABC transporter permease;
Pssm-ID: 182035 [Multi-domain] Cd Length: 312 Bit Score: 110.63 E-value: 1.23e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 23 ILLFCALFgFGSVMYTGFFSWQVLLDLLVDNAFLLIVAIGMTFVIVSGGIDLSVGSVVALTTIVEAVLSEHLHWPVWVIL 102
Cdd:PRK09699 17 ILAIIVAI-FGSLSPEYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKLMLAGVDPFLAAL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 103 PTVLLMGTVFGAVQGALIHFFRLQAFIVTLAGMFFARGLCFLITTQSiTITDPTFQKISAFRLDIGvgSVTANVLIAFVT 182
Cdd:PRK09699 96 IGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDAN-SVYGFSFDFVNFFAASVI--GIPVPVIFSLIV 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 183 LLAAIYVAHFTRFGRNVYAIGGNARSALLMGLPVAHTRIGVYALSGFCSALGGAVFTFYVLSGYGLQGQGMELDAIAATV 262
Cdd:PRK09699 173 ALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAGMGFETYAIASAI 252
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 501395122 263 IGGTLLTGGVGYVIGSLFGVGILGTIQTLITFDGtLSSWWTRIVIGALLCAFCLLQRLIER 323
Cdd:PRK09699 253 IGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQ-VQTYYQLVVMGGLIIAAVALDRLISK 312
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
46-311 |
2.86e-24 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 100.41 E-value: 2.86e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 46 LLDLLVDNAFLLIVAIGMTFVI-VSGGIDLSVGSVVALTTIVEAVLSEHLHWPVWVILPTVLLMGTVFGAVQGALIHFFR 124
Cdd:pfam02653 2 ILNILTLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAYVAAMLLNLLGPGLWLALPVGILVGAAVGLLIGILTLRLK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 125 LQAFIVTLAGMFFARGLCFLITTQSITI--TDPTFQKISAFRLDIGVGSVTANVLIAFVTLLAAIYVAHFTRFGRNVYAI 202
Cdd:pfam02653 82 INEVIITLLLNLAALGLALFLVTGILGGegGTSGITGPSGFPGAFLSFAFAFIFLLALLLVLALWLLLYRTKFGRALRAV 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 203 GGNARSALLMGLPVAHTRIGVYALSGFCSALGGAVFTFYVLSGYGLQ-GQGMELDAIAATVIGGTLLtggvgyVIGSLFG 281
Cdd:pfam02653 162 GENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPSNfGVGLGLDAIAAVVLGGAGS------PIGVVIG 235
|
250 260 270
....*....|....*....|....*....|
gi 501395122 282 VGILGTIQTLITFDGTLSSWWTRIVIGALL 311
Cdd:pfam02653 236 SLIIGLVQSLGLGALGSPPELSLLVLGALL 265
|
|
| mglC |
PRK09478 |
galactose/methyl galactoside ABC transporter permease MglC; |
40-311 |
1.49e-23 |
|
galactose/methyl galactoside ABC transporter permease MglC;
Pssm-ID: 181892 [Multi-domain] Cd Length: 336 Bit Score: 99.76 E-value: 1.49e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 40 FFSWQVLLDLLVDNAFLLIVAIGMTFVIVSGGIDLSVGSVVALTTIVEAVLSEHL-----------HWPVWVILPTVLLM 108
Cdd:PRK09478 36 FLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQSMdnankvfpelaTMPIALVILIVCAI 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 109 GTVFGAVQGALIHFFRLQAFIVTLAGMFFARGLCFLIT----TQSITITDPTFQKISAFRLDIGvgsvtaNVLIAFVTLL 184
Cdd:PRK09478 116 GAVIGLINGLIIAYLNVTPFIATLGTMIIVYGINSLYYdfvgASPISGFDSGFSTFAQGFVALG------SFRLSYITFY 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 185 AAIYVAHF------TRFGRNVYAIGGNARSALLMGLPVAHTRIGVYALSGFCSALGGAVFTFYVLSGYGLQGQGMELDAI 258
Cdd:PRK09478 190 ALIAVAFVwvlwnkTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMIYALSGVFYAFGGMLEAGRIGSATNNLGFMYELDAI 269
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 501395122 259 AATVIGGTLLTGGVGYVIGSLFGVGILGTIQTLITFDGtLSSWWTRIVIGALL 311
Cdd:PRK09478 270 AACVVGGVSFSGGVGTVIGVVTGVIIFTVINYGLTYIG-VNPYWQYIIKGAII 321
|
|
| PRK15432 |
PRK15432 |
autoinducer 2 ABC transporter permease LsrC; Provisional |
8-326 |
2.47e-23 |
|
autoinducer 2 ABC transporter permease LsrC; Provisional
Pssm-ID: 185330 [Multi-domain] Cd Length: 344 Bit Score: 99.03 E-value: 2.47e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 8 WAHIVDPRTLPIAVTILLfcaLFGFGSVMYTGFFSWQVLLDLLVDNAFLLIVAIGMTFVIVSGGIDLSVGSVVALTT-IV 86
Cdd:PRK15432 2 LKFIQNNRELTALLAIVL---LFVLLGFLDRQYLSLQTLTMVFSSAQILILLAIGATLVMLTRNIDVSVGSITGLCAvLV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 87 EAVLSEHLHWPVWVILptVLLMGTVFGAVQGALIHFFRLQAFIVTLAGMFFARGLCFLIT---------TQSITITDPTF 157
Cdd:PRK15432 79 GMLLNAGYSLPVACLA--TLLLGLLAGFFNGVLVAWLRIPAIVATLGTLGLYRGIMLLWTggkwieglpAELKQLSAPIL 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 158 QKISAfrldIGvgsvtanvLIAFVTLLAAIYVAHFTRFGRNVYAIGGNARSALLMGLPVAHTRIGVYALSGFCSALGGAV 237
Cdd:PRK15432 157 LGISP----IG--------WLTLILILAMAWLLAKTAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIV 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 238 FTFYVLSGYGLQGQGMELDAIAATVIGGTLLTGGVGYVIGSLFGVGILGTIQTLITFdGTLSSWWTRIVIGALLCAFCL- 316
Cdd:PRK15432 225 FASQIGFIPNQTGTGLEMKAIAACVLGGISLLGGSGTIIGAVLGAYFLTQIDSVLVL-LRIPAWWNDFIAGLVLLGVLVf 303
|
330
....*....|...
gi 501395122 317 ---LQRLIERHAK 326
Cdd:PRK15432 304 dgrLRCALERNLR 316
|
|
| PRK15038 |
PRK15038 |
autoinducer 2 ABC transporter permease LsrD; |
58-297 |
8.12e-16 |
|
autoinducer 2 ABC transporter permease LsrD;
Pssm-ID: 184998 Cd Length: 330 Bit Score: 77.56 E-value: 8.12e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 58 IVAIGMTFVIVSGGIDLSVGSVVALTTIVEAVLSEhLHWPVWVILPTVLLMGTVFGAVQGALIHFFRLQAFIVTLAGMFF 137
Cdd:PRK15038 47 IVALPLTMVIVSGGIDISFGSTIGLCAIALGVLFQ-SGVPMPLAILLTLLLGALCGLINAGLIIYTGVNPLVITLGTLYL 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 138 ARGLCFLITTQSitiTDPTFQKISAFRL------DIGVGSVTANVLIAFVTLLAAIYVAHFTRFGRNVYAIGGNARSALL 211
Cdd:PRK15038 126 FGGSALLLSGMA---GATGYEGIGGFPMaftdfaNLDVLGLPVPLIIFLICLLVFWLLMHRTHAGRNVFLIGQSPRVALY 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 212 MGLPVAHTRIGVYALSGFCSALGGAVFTFYVLSGYGLQGQGMELDAIAATVIGGTLLTGGVGYVIGSLFGVGILGTIQTL 291
Cdd:PRK15038 203 SAIPVNRTLCALYAMTGLASAIAAVLLVSYFGSARSDLGASFLMPAITAVVLGGANIYGGSGSIIGTALAVLLVGYLQQG 282
|
....*.
gi 501395122 292 ITFDGT 297
Cdd:PRK15038 283 LQMAGV 288
|
|
| LivH |
COG0559 |
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ... |
43-314 |
5.94e-12 |
|
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440325 [Multi-domain] Cd Length: 290 Bit Score: 65.47 E-value: 5.94e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 43 WQVLLDLLVDNAFLLIVAIGMTFV-IVSGGIDLSVGSVVALTTIVEAVLSEHLHWPVWVILPTVLLMGTVFG-AVQGALI 120
Cdd:COG0559 5 LQQLLNGLSLGSIYALIALGLTLIfGVMGVINFAHGEFVMLGAYVAYTLATLLGLPLWLALLLAVLVAALLGvLLERLVI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 121 HFFR----LQAFIVTLAGMFFARGLCFLI-TTQSITITDPTFQKISAFRLDIGVGSVTAnVLIAFVTLLAAIYVAHFTRF 195
Cdd:COG0559 85 RPLRgappLALLLATIGLSLVLQGLVLLIfGADPRSFPALLSGSVELGGVSIPAYRLFI-IVVALVLLAALWLFLRRTRL 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 196 GRNVYAIGGNARSALLMGLPVAHTRIGVYALSGFCSALGGAVFTFYVLSGYGLqGQGMELDAIAATVIGGtlltggvgyv 275
Cdd:COG0559 164 GLAMRAVAQNREAARLMGINVDRVIALTFALGAALAGLAGVLLAPIYSVSPTM-GFLLGLKAFAAVVLGG---------- 232
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 501395122 276 IGSLFG--VG--ILGTIQTLITFdgTLSSWWTRIVIGALLCAF 314
Cdd:COG0559 233 LGSIPGavVGglLLGLAESLGAA--YLPSGYKDVVAFVLLILV 273
|
|
| TM_PBP1_LivH_like |
cd06582 |
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ... |
54-317 |
3.05e-10 |
|
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119324 [Multi-domain] Cd Length: 272 Bit Score: 60.14 E-value: 3.05e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 54 AFLLIVAIGMTFVI-VSGGIDLSVGSVVALTTIVEAVLSEHLHWPVWVILPTVLLMGTVFG-AVQGALIHFFR---LQAF 128
Cdd:cd06582 6 AIYALIALGLTLIFgVTGVINFAHGEFYMLGAYVAYTLLVALGLPFWLALLLALLVAALLGvLLERLVLRPLRgapLLTL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 129 IVTLAGMFFARGLCFLITTQSITITDPTFqkiSAFRLDIGVGSVTANVLIAFVTLLAAI----YVAHFTRFGRNVYAIGG 204
Cdd:cd06582 86 LITFGGLLILLQGLLLIFGGDPRVPPPPL---LSGSVELGGVTIPPYRLFIIAVALVLLaalyLFLRRTRLGRAIRAVAQ 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 205 NARSALLMGLPVAHTRIGVYALSGFCSALGGAVFTFYVLSGYGLqGQGMELDAIAATVIggtlltGGVGYVIGSLFGVGI 284
Cdd:cd06582 163 NPEAARLLGINVRRVFALTFALGAALAGLAGVLLAPITGVSPTM-GLLLLLKAFAAVVL------GGLGSIPGAVVGGLL 235
|
250 260 270
....*....|....*....|....*....|...
gi 501395122 285 LGTIQTLITfdGTLSSWWTRIVIGALLCAFCLL 317
Cdd:cd06582 236 LGLAESLAA--AYLSSGYKDAVAFVLLILVLLV 266
|
|
| TM_PBP1_branched-chain-AA_like |
cd06574 |
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette ... |
56-263 |
2.38e-09 |
|
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.
Pssm-ID: 119320 [Multi-domain] Cd Length: 266 Bit Score: 57.29 E-value: 2.38e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 56 LLIVAIGMTFVI-VSGGIDLSVGSVVALTTIVEAVLSeHLHWPVWVILPTVLLMGTVFGAVQGALIHFFRLQAFIVTLAG 134
Cdd:cd06574 4 YAILALGVYIVFrILGFPDLTVDGSFPLGAAVAAILI-VAGYNPWLALIAAILAGAAAGLVTGFLHTRLKINGLLAGILI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 135 MFFARGLCFLITTQSI--TITDPTFQKISAFRLDIGVGSVTANVLIAFVTLLAAIYVAHFTRFGRNVYAIGGNARSALLM 212
Cdd:cd06574 83 MIGLYSINLRIMGGPNipLGTRDTLLGLLLLFGISGTLSIPVVLLLIVLLVLFLVIWFLRTKLGLAMRATGDNPDMARSL 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 501395122 213 GLPVAHTRIGVYALSGFCSALGGAVFTFYVLSGYGLQGQGMELDAIAATVI 263
Cdd:cd06574 163 GINVDRTRILGLVISNALAALGGALYAQYQGFADVNMGIGTGVIGLAAVII 213
|
|
| TM_PBP1_LivM_like |
cd06581 |
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ... |
54-317 |
4.60e-09 |
|
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119323 [Multi-domain] Cd Length: 268 Bit Score: 56.68 E-value: 4.60e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 54 AFLLIVAIGMTFVI-VSGGIDLSVGSVVALTTIVEAVLSEHLHWPVWVILPTVLLMGTVFGAVQGALIhfFRLQAF---I 129
Cdd:cd06581 2 LIYAILALGLNLLLgYAGQLSLGHAAFFGIGAYTAALLATRLGLPFWLALLAAGLVAALVGLLLGLPA--LRLRGVyfaI 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 130 VTLAGMFFARGLcfLITTQSIT-----ITDPTFQKISAFRLDIGVGSVTANVLIAFVTLLAAIYVAHfTRFGRNVYAIGG 204
Cdd:cd06581 80 ATLAFAEIVRLL--ALNWSSLTggsngLSGIPPPLLGGLLLSSPLAFYYLVLAVLLLVLLLLRRLVR-SPFGRALRAIRE 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 205 NARSALLMGLPVAHTRIGVYALSGFCSALGGAVFTFYVLS-GYGLQGQGMELDAIAATVIggtlltGGVGYVIGSLFGVG 283
Cdd:cd06581 157 NEVAAEALGINVTRYKLLAFALSAALAGLAGALYAHYLGFvSPESFGFALSIELLLMVVL------GGLGSLLGPVLGAA 230
|
250 260 270
....*....|....*....|....*....|....
gi 501395122 284 ILGTIQTLITFdgtLSSWWTRIVIGALLCAFCLL 317
Cdd:cd06581 231 LLVLLPELLRS---LGPGLRLLVFGLLLILVVLF 261
|
|
| TM_PBP1_transp_TpRbsC_like |
cd06580 |
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. ... |
56-263 |
2.31e-07 |
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Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Pssm-ID: 119322 [Multi-domain] Cd Length: 234 Bit Score: 51.29 E-value: 2.31e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 56 LLIVAIGMTFVIVSGGIDLSVGSVVALTTIVEAVLSEHLHWPVWVILPTVLLMGTVFGA----VQGALIHFFRLQAFIVT 131
Cdd:cd06580 4 LILAALGVAISFRAGVFNIGLEGQMLLGAFAAALVALYLGLPATGSLPLGLLAAALAGAlwalLPALLKAKLGVNEVISG 83
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90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 132 LAGMFFARGLCFLIttqsititdptfqkisafrldigvgsvtanVLIAFVTLLAAIYVAHFTRFGRNVYAIGGNARSALL 211
Cdd:cd06580 84 LMLNYIALGLTSYL------------------------------LLLALLLVILVWLLLYRTRFGLRLRAVGENPRAARY 133
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 501395122 212 MGLPVAHTRIGVYALSGFCSALGGAVFTFYVLSGYGLQ-GQGMELDAIAATVI 263
Cdd:cd06580 134 AGINVKRVRLLAMLISGALAGLAGAYLVLGVQGRFTEGmSAGYGFIAIAVALL 186
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|
| NupP |
COG4603 |
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and ... |
17-247 |
1.97e-04 |
|
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and metabolism];
Pssm-ID: 443653 [Multi-domain] Cd Length: 356 Bit Score: 42.80 E-value: 1.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 17 LPIAVTILLFCALF---------GFGSVMYTGFFSWQVLLDLLVDNAFLLIVAIGMTFV-------------IVSGGIdl 74
Cdd:COG4603 21 LAVLLALLVGALLIllaganpleAYSALFQGAFGSPYGLGETLVKATPLILTGLAVAVAfraglfnigaegqLYLGAL-- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 75 sVGSVVALTTiveavlsehLHWPVWVILPTVLLMGTVFGAVQGALIHFFRLQA------------FIVTLAGMFFARGlc 142
Cdd:COG4603 99 -AAAAVGLAL---------PGLPGPLHLPLALLAGALAGALWAAIPGLLKARFgvnevittlmlnYIALYLVNYLVRG-- 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501395122 143 FLITTQSITITDPTFQKISAFRLDIGVGSVTANVLIAFVTLLAAIYVAHFTRFGRNVYAIGGNARSALLMGLPVAHTRIG 222
Cdd:COG4603 167 PLRDPGSGFPQTPPIPESARLPRLLPGTRLHLGLLIALLAAVLVWVLLNRTTLGYELRAVGLNPRAARYAGINVKRLIVL 246
|
250 260 270
....*....|....*....|....*....|...
gi 501395122 223 VYALSGFCSALGGAV--------FTFYVLSGYG 247
Cdd:COG4603 247 AMLISGALAGLAGAVevlgvqgrLTPGFSPGYG 279
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