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Conserved domains on  [gi|501408107|ref|WP_012439673|]
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RES domain-containing protein [Xanthomonas campestris]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RES super family cl02411
RES domain; This presumed domain contains 3 highly conserved polar groups that could form an ...
 35-122 5.14e-03

RES domain; This presumed domain contains 3 highly conserved polar groups that could form an active site. These are an arginine, glutamate and serine, hence the RES domain. The domain is found widely distributed in bacteria. The domain is about 150 residues in length.


The actual alignment was detected with superfamily member pfam08808:

Pssm-ID: 470568 [Multi-domain]  Cd Length: 154  Bit Score: 35.52  E-value: 5.14e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501408107   35 ALHMLFLAARHAYPITRELAKAAKAQGFDGVIYPSyfsfartgampfetiygisiRRIKELRAHAMFHVVPNIGLFGRPI 114
Cdd:pfam08808  87 LLPLPWRDPAADYPATQALGDALRAAGSDGLLYPS--------------------VRDPGGRNLVLFPAHPDAAAVPVQV 146


                  ....*...
gi 501408107  115 SDGVLRVD 122
Cdd:pfam08808 147 PDLPLPLD 154
 
Name Accession Description Interval E-value
RES pfam08808
RES domain; This presumed domain contains 3 highly conserved polar groups that could form an ...
 35-122 5.14e-03

RES domain; This presumed domain contains 3 highly conserved polar groups that could form an active site. These are an arginine, glutamate and serine, hence the RES domain. The domain is found widely distributed in bacteria. The domain is about 150 residues in length.


Pssm-ID: 400937 [Multi-domain]  Cd Length: 154  Bit Score: 35.52  E-value: 5.14e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501408107   35 ALHMLFLAARHAYPITRELAKAAKAQGFDGVIYPSyfsfartgampfetiygisiRRIKELRAHAMFHVVPNIGLFGRPI 114
Cdd:pfam08808  87 LLPLPWRDPAADYPATQALGDALRAAGSDGLLYPS--------------------VRDPGGRNLVLFPAHPDAAAVPVQV 146


                  ....*...
gi 501408107  115 SDGVLRVD 122
Cdd:pfam08808 147 PDLPLPLD 154
 
Name Accession Description Interval E-value
RES pfam08808
RES domain; This presumed domain contains 3 highly conserved polar groups that could form an ...
 35-122 5.14e-03

RES domain; This presumed domain contains 3 highly conserved polar groups that could form an active site. These are an arginine, glutamate and serine, hence the RES domain. The domain is found widely distributed in bacteria. The domain is about 150 residues in length.


Pssm-ID: 400937 [Multi-domain]  Cd Length: 154  Bit Score: 35.52  E-value: 5.14e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501408107   35 ALHMLFLAARHAYPITRELAKAAKAQGFDGVIYPSyfsfartgampfetiygisiRRIKELRAHAMFHVVPNIGLFGRPI 114
Cdd:pfam08808  87 LLPLPWRDPAADYPATQALGDALRAAGSDGLLYPS--------------------VRDPGGRNLVLFPAHPDAAAVPVQV 146


                  ....*...
gi 501408107  115 SDGVLRVD 122
Cdd:pfam08808 147 PDLPLPLD 154
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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