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Conserved domains on  [gi|501410825|ref|WP_012442391|]
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EscU/YscU/HrcU family type III secretion system export apparatus switch protein [Erwinia tasmaniensis]

Protein Classification

EscU/YscU/HrcU family type III secretion system export apparatus switch protein( domain architecture ID 10013006)

EscU/YscU/HrcU family type III secretion system export apparatus switch protein similar to secretion apparatus protein BsaZ and surface presentation of antigens protein SpaS

Gene Ontology:  GO:0009306|GO:0016020
PubMed:  26520801|9618447

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
PRK08156 PRK08156
EscU/YscU/HrcU family type III secretion system export apparatus switch protein;
1-363 0e+00

EscU/YscU/HrcU family type III secretion system export apparatus switch protein;


:

Pssm-ID: 236168  Cd Length: 361  Bit Score: 634.74  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825   1 MAEKTEKPTDKRRRDSAKKGQTFKSKDLITTTTLLAGVCYLAYAINFHPFISFYSLVLREGDKISLNDFLVELMRVFFTL 80
Cdd:PRK08156   1 MANKTEKPTKKKLRDSAKKGQSFKSKDLITAVVLLGGIAYLVSFGSFSEFMSIYKRILADNFDINIGDYFLAVMIIFLKI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825  81 SLPFIAVCTIAGAVLTLLQTRFSIATEAIKLNFKALNPVQGFKKIFSMRTIKELVKSLLYLIVFACSCYSLIRVDLGQAI 160
Cdd:PRK08156  81 LIPFLLLCLLAGALPTLLQTRFVLATEAIKLNFSALNPVKGLKKIFSLRTVKEFVKALLYLIVFALTAYVFWKNYKKEIF 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825 161 SIYNGSIDVLISVWTALTMKAVMIFIAWSVFVLLIDFIAEYFLHSKDMKMDKHEVKQERKESDGNPEIKGARRRAHHEIL 240
Cdd:PRK08156 161 SQLNGNIVGLIVIWRELLVKLVLTFLACALIVLILDFIAEYFLHMKDMKMDKQEVKREYKEQEGNPEIKSKRREAHQEIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825 241 SGEEMAAIRNSEVVMANPTHIAIAIYFNPDVASLPFIALRSTNMKARAAIAYAEKIGIPVVRYIPLARRLYHNYSQYSFI 320
Cdd:PRK08156 241 SEQVKSDIRNSRLIVANPTHIAIGIYFNPELAPIPFISVRETNQRALAVRAYAEKVGVPVVRDIKLARRLYKTHRRYSFV 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|...
gi 501410825 321 SINDdaLMEVMDILIWLRNVEAAGMDIPDKPDVSVVNGVPVDC 363
Cdd:PRK08156 321 SLED--LDEVLRLLIWLEQVENAGMGVPQPQENEVRSAEPGAD 361
 
Name Accession Description Interval E-value
PRK08156 PRK08156
EscU/YscU/HrcU family type III secretion system export apparatus switch protein;
1-363 0e+00

EscU/YscU/HrcU family type III secretion system export apparatus switch protein;


Pssm-ID: 236168  Cd Length: 361  Bit Score: 634.74  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825   1 MAEKTEKPTDKRRRDSAKKGQTFKSKDLITTTTLLAGVCYLAYAINFHPFISFYSLVLREGDKISLNDFLVELMRVFFTL 80
Cdd:PRK08156   1 MANKTEKPTKKKLRDSAKKGQSFKSKDLITAVVLLGGIAYLVSFGSFSEFMSIYKRILADNFDINIGDYFLAVMIIFLKI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825  81 SLPFIAVCTIAGAVLTLLQTRFSIATEAIKLNFKALNPVQGFKKIFSMRTIKELVKSLLYLIVFACSCYSLIRVDLGQAI 160
Cdd:PRK08156  81 LIPFLLLCLLAGALPTLLQTRFVLATEAIKLNFSALNPVKGLKKIFSLRTVKEFVKALLYLIVFALTAYVFWKNYKKEIF 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825 161 SIYNGSIDVLISVWTALTMKAVMIFIAWSVFVLLIDFIAEYFLHSKDMKMDKHEVKQERKESDGNPEIKGARRRAHHEIL 240
Cdd:PRK08156 161 SQLNGNIVGLIVIWRELLVKLVLTFLACALIVLILDFIAEYFLHMKDMKMDKQEVKREYKEQEGNPEIKSKRREAHQEIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825 241 SGEEMAAIRNSEVVMANPTHIAIAIYFNPDVASLPFIALRSTNMKARAAIAYAEKIGIPVVRYIPLARRLYHNYSQYSFI 320
Cdd:PRK08156 241 SEQVKSDIRNSRLIVANPTHIAIGIYFNPELAPIPFISVRETNQRALAVRAYAEKVGVPVVRDIKLARRLYKTHRRYSFV 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|...
gi 501410825 321 SINDdaLMEVMDILIWLRNVEAAGMDIPDKPDVSVVNGVPVDC 363
Cdd:PRK08156 321 SLED--LDEVLRLLIWLEQVENAGMGVPQPQENEVRSAEPGAD 361
FlhB_rel_III TIGR01404
type III secretion protein, YscU/HrpY family; This model represents one of several families of ...
 2-340 2.09e-116

type III secretion protein, YscU/HrpY family; This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 130471  Cd Length: 342  Bit Score: 341.56  E-value: 2.09e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825    2 AEKTEKPTDKRRRDSAKKGQTFKSKDLITTTTLLAGVCYLAYAINFHPFIS--FYSLVLREGDKI---SLNDFLVELMRV 76
Cdd:TIGR01404   1 AEKTEKPTPKKLRDARKKGQVAKSKDLTSAVLLLAGFFYLLSLASVFEEMLiaLLILPLDFDDQPfayALAQVLSGLLQL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825   77 FFTLSLPFIAVCTIAGAVLTLLQTRFSIATEAIKLNFKALNPVQGFKKIFSMRTIKELVKSLLYLIVFACSCYSLIRVDL 156
Cdd:TIGR01404  81 ILTVLLPLLAIVLLAGVLSGLLQVGFVLATEALKPDLSKLNPISGLKQIFSLRSLKELLKSILKLVALALIFYLFLKNYL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825  157 GQAISIYNGSIDVLISVWTALTMKAVMIFIAWSVFVLLIDFIAEYFLHSKDMKMDKHEVKQERKESDGNPEIKGARRRAH 236
Cdd:TIGR01404 161 KELFALPYCGLDGLAPIVGELLKLLILVCLGFFLVVGLADFAFQRYLFMKDLKMSKDEVKREYKEQEGDPEIKSKRRELH 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825  237 HEILSGEEMAAIRNSEVVMANPTHIAIAIYFNPDVASLPFIALRSTNMKARAAIAYAEKIGIPVVRYIPLARRLYHNYSQ 316
Cdd:TIGR01404 241 QEILSEQLKSDVKRSTLVVANPTHIAIGIYYKPGETPLPLIICKGTDAQALAVRAYAEEAGIPVVRDIPLARQLYRTARV 320

                         330       340
                  ....*....|....*....|....
gi 501410825  317 YSFISinDDALMEVMDILIWLRNV 340
Cdd:TIGR01404 321 GQYIP--EELFEAVAELLRWLEQV 342
FlhB COG1377
Flagellar biosynthesis protein FlhB [Cell motility];
1-342 9.52e-111

Flagellar biosynthesis protein FlhB [Cell motility];


Pssm-ID: 440987  Cd Length: 352  Bit Score: 327.46  E-value: 9.52e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825   1 MAEKTEKPTDKRRRDSAKKGQTFKSKDLITTTTLLAGVCYLAYAIN--FHPFISFYSLVLREGDKISLN-----DFLVEL 73
Cdd:COG1377    6 DGEKTEEPTPKRLRDAREKGQVARSRELTTALVLLAGLLLLLFLGPslAERLGELLRSLLSFARALALDpadllALLGAL 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825  74 MRVFFTLSLPFIAVCTIAGAVLTLLQTRFSIATEAIKLNFKALNPVQGFKKIFSMRTIKELVKSLLYLIVFACSCYSLIR 153
Cdd:COG1377   86 LLEALLALLPLLLVLALAALLANLLQGGFLFSTKALKPKFSRLNPISGLKRLFSLRALVELLKSLLKLLLVGGVAYLVLR 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825 154 VDLGQAISIYNGSIDVLISVWTALTMKAVMIFIAWSVFVLLIDFIAEYFLHSKDMKMDKHEVKQERKESDGNPEIKGARR 233
Cdd:COG1377  166 GELPELLALAALPLAAALALLGDLLLKLLLAVLLALLVIAAIDYPYQRWEHEKKLRMTKQEVKDEHKESEGDPEVKGRIR 245

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825 234 RAHHEILSGEEMAAIRNSEVVMANPTHIAIAIYFNPDVASLPFIALRSTNMKARAAIAYAEKIGIPVVRYIPLARRLYHN 313
Cdd:COG1377  246 QLQREMARRRMMAAVPKADVVITNPTHYAVALKYDPGKMGAPVVVAKGADEVALRIREIAREHGVPIVENPPLARALYAT 325

                        330       340
                 ....*....|....*....|....*....
gi 501410825 314 YSQYSFISinDDALMEVMDILIWLRNVEA 342
Cdd:COG1377  326 VEVGQEIP--EELYQAVAEVLAYVYQLKR 352
Bac_export_2 pfam01312
FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, ...
 3-313 5.60e-100

FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, HrcU SsaU and YopU. All of these proteins export peptides using the type III secretion system. The peptides exported are quite diverse.


Pssm-ID: 460157  Cd Length: 338  Bit Score: 299.36  E-value: 5.60e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825    3 EKTEKPTDKRRRDSAKKGQTFKSKDLITTTTLLAGVCYLAYAINF--HPFISFYSLVLREGDKI---SLNDFLVELMRVF 77
Cdd:pfam01312   1 EKTEEPTPKKLRDAREKGQVAKSRELTSAAVLLAGLLALLFLGPFllERLAELFRSVLSFDRAAdpaALLALLLALLLEL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825   78 FTLSLPFIAVCTIAGAVLTLLQTRFSIATEAIKLNFKALNPVQGFKKIFSMRTIKELVKSLLYLIVFACSCYSLIRVDLG 157
Cdd:pfam01312  81 LLLLLPLLLVLLLAALLANLLQVGFLFSTKALKPKFSKLNPISGLKRIFSLRSLVELLKSLLKVAVVGAVAYLVLRGNLP 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825  158 QAISIYNGSIDVLISVWTALTMKAVMIFIAWSVFVLLIDFIAEYFLHSKDMKMDKHEVKQERKESDGNPEIKGARRRAHH 237
Cdd:pfam01312 161 ELLALADLPLEAALALLGDLLLKLLLAVLLALLVIAAIDYPYQRWQFEKKLKMTKQEVKDEYKESEGDPEIKGRIRQLQR 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 501410825  238 EILSGEEMAAIRNSEVVMANPTHIAIAIYFNPDVASLPFIALRSTNMKARAAIAYAEKIGIPVVRYIPLARRLYHN 313
Cdd:pfam01312 241 EMARRRMMAEVPKADVVITNPTHYAVALKYDPGKMPAPVVVAKGADELALRIREIAREHGVPIVENPPLARALYAT 316
 
Name Accession Description Interval E-value
PRK08156 PRK08156
EscU/YscU/HrcU family type III secretion system export apparatus switch protein;
1-363 0e+00

EscU/YscU/HrcU family type III secretion system export apparatus switch protein;


Pssm-ID: 236168  Cd Length: 361  Bit Score: 634.74  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825   1 MAEKTEKPTDKRRRDSAKKGQTFKSKDLITTTTLLAGVCYLAYAINFHPFISFYSLVLREGDKISLNDFLVELMRVFFTL 80
Cdd:PRK08156   1 MANKTEKPTKKKLRDSAKKGQSFKSKDLITAVVLLGGIAYLVSFGSFSEFMSIYKRILADNFDINIGDYFLAVMIIFLKI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825  81 SLPFIAVCTIAGAVLTLLQTRFSIATEAIKLNFKALNPVQGFKKIFSMRTIKELVKSLLYLIVFACSCYSLIRVDLGQAI 160
Cdd:PRK08156  81 LIPFLLLCLLAGALPTLLQTRFVLATEAIKLNFSALNPVKGLKKIFSLRTVKEFVKALLYLIVFALTAYVFWKNYKKEIF 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825 161 SIYNGSIDVLISVWTALTMKAVMIFIAWSVFVLLIDFIAEYFLHSKDMKMDKHEVKQERKESDGNPEIKGARRRAHHEIL 240
Cdd:PRK08156 161 SQLNGNIVGLIVIWRELLVKLVLTFLACALIVLILDFIAEYFLHMKDMKMDKQEVKREYKEQEGNPEIKSKRREAHQEIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825 241 SGEEMAAIRNSEVVMANPTHIAIAIYFNPDVASLPFIALRSTNMKARAAIAYAEKIGIPVVRYIPLARRLYHNYSQYSFI 320
Cdd:PRK08156 241 SEQVKSDIRNSRLIVANPTHIAIGIYFNPELAPIPFISVRETNQRALAVRAYAEKVGVPVVRDIKLARRLYKTHRRYSFV 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|...
gi 501410825 321 SINDdaLMEVMDILIWLRNVEAAGMDIPDKPDVSVVNGVPVDC 363
Cdd:PRK08156 321 SLED--LDEVLRLLIWLEQVENAGMGVPQPQENEVRSAEPGAD 361
FlhB_rel_III TIGR01404
type III secretion protein, YscU/HrpY family; This model represents one of several families of ...
 2-340 2.09e-116

type III secretion protein, YscU/HrpY family; This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 130471  Cd Length: 342  Bit Score: 341.56  E-value: 2.09e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825    2 AEKTEKPTDKRRRDSAKKGQTFKSKDLITTTTLLAGVCYLAYAINFHPFIS--FYSLVLREGDKI---SLNDFLVELMRV 76
Cdd:TIGR01404   1 AEKTEKPTPKKLRDARKKGQVAKSKDLTSAVLLLAGFFYLLSLASVFEEMLiaLLILPLDFDDQPfayALAQVLSGLLQL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825   77 FFTLSLPFIAVCTIAGAVLTLLQTRFSIATEAIKLNFKALNPVQGFKKIFSMRTIKELVKSLLYLIVFACSCYSLIRVDL 156
Cdd:TIGR01404  81 ILTVLLPLLAIVLLAGVLSGLLQVGFVLATEALKPDLSKLNPISGLKQIFSLRSLKELLKSILKLVALALIFYLFLKNYL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825  157 GQAISIYNGSIDVLISVWTALTMKAVMIFIAWSVFVLLIDFIAEYFLHSKDMKMDKHEVKQERKESDGNPEIKGARRRAH 236
Cdd:TIGR01404 161 KELFALPYCGLDGLAPIVGELLKLLILVCLGFFLVVGLADFAFQRYLFMKDLKMSKDEVKREYKEQEGDPEIKSKRRELH 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825  237 HEILSGEEMAAIRNSEVVMANPTHIAIAIYFNPDVASLPFIALRSTNMKARAAIAYAEKIGIPVVRYIPLARRLYHNYSQ 316
Cdd:TIGR01404 241 QEILSEQLKSDVKRSTLVVANPTHIAIGIYYKPGETPLPLIICKGTDAQALAVRAYAEEAGIPVVRDIPLARQLYRTARV 320

                         330       340
                  ....*....|....*....|....
gi 501410825  317 YSFISinDDALMEVMDILIWLRNV 340
Cdd:TIGR01404 321 GQYIP--EELFEAVAELLRWLEQV 342
FlhB COG1377
Flagellar biosynthesis protein FlhB [Cell motility];
1-342 9.52e-111

Flagellar biosynthesis protein FlhB [Cell motility];


Pssm-ID: 440987  Cd Length: 352  Bit Score: 327.46  E-value: 9.52e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825   1 MAEKTEKPTDKRRRDSAKKGQTFKSKDLITTTTLLAGVCYLAYAIN--FHPFISFYSLVLREGDKISLN-----DFLVEL 73
Cdd:COG1377    6 DGEKTEEPTPKRLRDAREKGQVARSRELTTALVLLAGLLLLLFLGPslAERLGELLRSLLSFARALALDpadllALLGAL 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825  74 MRVFFTLSLPFIAVCTIAGAVLTLLQTRFSIATEAIKLNFKALNPVQGFKKIFSMRTIKELVKSLLYLIVFACSCYSLIR 153
Cdd:COG1377   86 LLEALLALLPLLLVLALAALLANLLQGGFLFSTKALKPKFSRLNPISGLKRLFSLRALVELLKSLLKLLLVGGVAYLVLR 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825 154 VDLGQAISIYNGSIDVLISVWTALTMKAVMIFIAWSVFVLLIDFIAEYFLHSKDMKMDKHEVKQERKESDGNPEIKGARR 233
Cdd:COG1377  166 GELPELLALAALPLAAALALLGDLLLKLLLAVLLALLVIAAIDYPYQRWEHEKKLRMTKQEVKDEHKESEGDPEVKGRIR 245

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825 234 RAHHEILSGEEMAAIRNSEVVMANPTHIAIAIYFNPDVASLPFIALRSTNMKARAAIAYAEKIGIPVVRYIPLARRLYHN 313
Cdd:COG1377  246 QLQREMARRRMMAAVPKADVVITNPTHYAVALKYDPGKMGAPVVVAKGADEVALRIREIAREHGVPIVENPPLARALYAT 325

                        330       340
                 ....*....|....*....|....*....
gi 501410825 314 YSQYSFISinDDALMEVMDILIWLRNVEA 342
Cdd:COG1377  326 VEVGQEIP--EELYQAVAEVLAYVYQLKR 352
Bac_export_2 pfam01312
FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, ...
 3-313 5.60e-100

FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, HrcU SsaU and YopU. All of these proteins export peptides using the type III secretion system. The peptides exported are quite diverse.


Pssm-ID: 460157  Cd Length: 338  Bit Score: 299.36  E-value: 5.60e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825    3 EKTEKPTDKRRRDSAKKGQTFKSKDLITTTTLLAGVCYLAYAINF--HPFISFYSLVLREGDKI---SLNDFLVELMRVF 77
Cdd:pfam01312   1 EKTEEPTPKKLRDAREKGQVAKSRELTSAAVLLAGLLALLFLGPFllERLAELFRSVLSFDRAAdpaALLALLLALLLEL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825   78 FTLSLPFIAVCTIAGAVLTLLQTRFSIATEAIKLNFKALNPVQGFKKIFSMRTIKELVKSLLYLIVFACSCYSLIRVDLG 157
Cdd:pfam01312  81 LLLLLPLLLVLLLAALLANLLQVGFLFSTKALKPKFSKLNPISGLKRIFSLRSLVELLKSLLKVAVVGAVAYLVLRGNLP 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825  158 QAISIYNGSIDVLISVWTALTMKAVMIFIAWSVFVLLIDFIAEYFLHSKDMKMDKHEVKQERKESDGNPEIKGARRRAHH 237
Cdd:pfam01312 161 ELLALADLPLEAALALLGDLLLKLLLAVLLALLVIAAIDYPYQRWQFEKKLKMTKQEVKDEYKESEGDPEIKGRIRQLQR 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 501410825  238 EILSGEEMAAIRNSEVVMANPTHIAIAIYFNPDVASLPFIALRSTNMKARAAIAYAEKIGIPVVRYIPLARRLYHN 313
Cdd:pfam01312 241 EMARRRMMAEVPKADVVITNPTHYAVALKYDPGKMPAPVVVAKGADELALRIREIAREHGVPIVENPPLARALYAT 316
EscU COG4792
Type III secretory pathway, EscU/YscU component [Intracellular trafficking, secretion, and ...
 1-340 2.28e-83

Type III secretory pathway, EscU/YscU component [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443821  Cd Length: 344  Bit Score: 257.13  E-value: 2.28e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825   1 MAEKTEKPTDKRRRDSAKKGQTFKSKDLITTTTLLAGVCYL---AYAInFHPFISFYSLVLREGDK---ISLNDFLVELM 74
Cdd:COG4792    2 SSEKTEQPTPKKLRDARKKGQVAKSKDIVSAVQLLALLGYLlleGDAL-VEHLQALILLPAQLLNLpfdEALNQLLGALL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825  75 RVFFTLSLPFIAVcTIAGAVLT-LLQTRFSIATEAIKLNFKALNPVQGFKKIFSMRTIKELVKSLLYLIVFACSCYSLIR 153
Cdd:COG4792   81 ELLLRLVLPLLAV-LILATILSnVAQVGFLFATEAIKPKLEKINPVENLKRIFSLRSLVELLKSLLKVVLLGLIFYYLLR 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825 154 VDLGQAISIYNGSIDVLISVWTALtMKAvMIFIAWSVFVL--LIDFIAEYFLHSKDMKMDKHEVKQERKESDGNPEIKGA 231
Cdd:COG4792  160 GYLPTLVYLPYCGLACAGPVVGAL-LKW-LWGVLLGAYLVfgLADYLFQRYQFRKQLRMSKDEVKREYKDMEGDPEIKQK 237

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825 232 RRRAHHEILSGEEMAAIRNSEVVMANPTHIAIAIYFNPDVASLPFIALRSTNMKARAAIAYAEKIGIPVVRYIPLARRLY 311
Cdd:COG4792  238 RRRLHREIQSGSLALNVKRSSVVVRNPTHIAVGLRYVPGETPLPVVLEKGEDARAQQIVKLAEEEGVPVVENIPLARALY 317

                        330       340       350
                 ....*....|....*....|....*....|.
gi 501410825 312 --HNYSQYsfisINDDALMEVMDILIWLRNV 340
Cdd:COG4792  318 adAGLGEY----IPEDLFEPVAEVLRLALLL 344
flhB PRK05702
flagellar type III secretion system protein FlhB;
3-313 6.23e-67

flagellar type III secretion system protein FlhB;


Pssm-ID: 235569  Cd Length: 359  Bit Score: 215.40  E-value: 6.23e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825   3 EKTEKPTDKRRRDSAKKGQTFKSKDLITTTTLLAGVCYLAYAIN---------FHPFISFYSLVLRegDKISLNDFLVEL 73
Cdd:PRK05702   8 EKTEEPTPKKLEKAREKGQVPRSRELNTAASLLAGLVVLWFFGPslarrlsgmLRALFSFDREIIF--DPNDVLSLFLLL 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825  74 MRVFFTLSLPFIAVCTIAGAVLTLLQTRFSIATEAIKLNFKALNPVQGFKKIFSMRTIKELVKSLLYLIVFACSCYSLIR 153
Cdd:PRK05702  86 LLEALLALLPILLLLVLAALLAPVLQGGLLFSPKALKPKFSKLNPLKGLKRMFSAQGLVELLKSLLKVLLVGGVAYFVLW 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825 154 VDLGQAISIYNGSIDVLISVWTALTMKAVMIFIAWSVFVLLIDFIAEYFLHSKDMKMDKHEVKQERKESDGNPEIKGARR 233
Cdd:PRK05702 166 SNLDELLSLAAEPLEAALGHALDLVLKLLLLVVLALLVIAAIDVPFQRWQYLKKLKMTKQEVKDEHKQSEGDPEVKGRIR 245

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825 234 RAHHEILSGEEMAAIRNSEVVMANPTHIAIAIYFNPDVASLP--------FIALRstnMKARaaiayAEKIGIPVVRYIP 305
Cdd:PRK05702 246 QLQREMARRRMMAAVPKADVVITNPTHYAVALKYDRGKMAAPvvvakgvdEVALK---IREI-----AREHNVPIVENPP 317


                 ....*...
gi 501410825 306 LARRLYHN 313
Cdd:PRK05702 318 LARALYAT 325
PRK12721 PRK12721
EscU/YscU/HrcU family type III secretion system export apparatus switch protein;
1-313 1.34e-62

EscU/YscU/HrcU family type III secretion system export apparatus switch protein;


Pssm-ID: 183700  Cd Length: 349  Bit Score: 203.75  E-value: 1.34e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825   1 MAEKTEKPTDKRRRDSAKKGQTFKSKDLITTTTLLAGVCY-LAYAINFHP----FISFYSLVLREGDKISLNDFLVELMR 75
Cdd:PRK12721   1 MSEKTEKPTEKKLRDARKKGQVVKSVEITSGVQLAALLLYfLLEGPSLVEaiigLINSTIQLLNKPFLYALTQILGAVLE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825  76 VFFTLSLPFIAVCTIAGAVLTLLQTRFSIATEAIKLNFKALNPVQGFKKIFSMRTIKELVKSLLYLIVFACSCYSLIRVd 155
Cdd:PRK12721  81 VLLRFLLVLGAGLIVATVGTGIAQVGPLLASKAIGPKAEKINPVSNAKQIFSLKSVFELCKSLLKVVILSLIFAYLLHY- 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825 156 lgqaisiYNGSID--VLISVWTALTMKAVMIFIAWSVFVL------LIDFIAEYFLHSKDMKMDKHEVKQERKESDGNPE 227
Cdd:PRK12721 160 -------YAPSFAylPYCGAACGLPVVSTLIFWLWGGLLAcylvfgILDYSFQRYKIMKQLKMSKDDVKQEYKDSEGDPE 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825 228 IKGARRRAHHEILSGEEMAAIRNSEVVMANPTHIAIAIYFNPDVASLPFIALRSTNMKARAAIAYAEKIGIPVVRYIPLA 307
Cdd:PRK12721 233 IKQKRRELQSEIQSGSLANNVKKSTAVVRNPTHIAVCLYYHPGETPLPRVLEKGKDAQALHIVKLAERNGIPVVENIPLA 312


                 ....*.
gi 501410825 308 RRLYHN 313
Cdd:PRK12721 313 RALFKE 318
PRK06298 PRK06298
type III secretion system protein; Validated
 1-346 1.91e-58

type III secretion system protein; Validated


Pssm-ID: 180519  Cd Length: 356  Bit Score: 193.53  E-value: 1.91e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825   1 MAEKTEKPTDKRRRDSAKKGQTFKSKDLITTTTLLAGVcYLAYAIN---FHPFISF----YSLVLREGDKISLNDFLVEL 73
Cdd:PRK06298   1 MGEKTEKATPKRLRDARKKGQVAKSQDFPSAITFIVSM-FLTFSLSsffAKHLGSFlvsiFKTAPTNHDPVVTVYYLKNC 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825  74 MRVFFTLSLPFIAVCTIAGAVLTLLQTRFSIATEAIKLNFKALNPVQGFKKIFSMRTIKELVKSLLYLIVFACSCYSLIR 153
Cdd:PRK06298  80 LILILTASLPLLGAVAFVGVLVGFLIVGPTFSTEVFKPDIKKFNPIDNLKQKFKVKTLIELLKSILKISGAALILYIVLK 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825 154 VDLGQAISIYNGSIDVLISVWTALTMKAVMIFIAWSVFVLLIDFIAEYFLHSKDMKMDKHEVKQERKESDGNPEIKGARR 233
Cdd:PRK06298 160 NRVPLIIETAGVPPLVTAQIFKEILYKAVTSIGIFFLVVAVLDLVYQRHNFAKELKMEKFEVKQEFKDTEGNPEIKGRRR 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825 234 RAHHEILSGEEMAAIRNSEVVMANPTHIAIAIYFNPDVASLPFIALRSTNMKARAAIAYAEKIGIPVVRYIPLARRLYHN 313
Cdd:PRK06298 240 QIAQEIAYEDTSSQVKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRIIAEAEKYGVPIMRNVPLAHQLLDE 319

                        330       340       350
                 ....*....|....*....|....*....|...
gi 501410825 314 YSQYSFISinDDALMEVMDILIWLRNVEAAGMD 346
Cdd:PRK06298 320 GKELKFIP--ESTYEAIGEILLYITSLNAQNPN 350
PRK12772 PRK12772
fused FliR family export protein/FlhB family type III secretion system protein;
3-311 3.69e-50

fused FliR family export protein/FlhB family type III secretion system protein;


Pssm-ID: 237199 [Multi-domain]  Cd Length: 609  Bit Score: 177.18  E-value: 3.69e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825   3 EKTEKPTDKRRRDSAKKGQTFKSKDLITTTTLLAGVCYLA----YAIN-----FHPFISFYSLVlrEGDKISLNDFLVEL 73
Cdd:PRK12772 264 DKTEEATPKKKSDARKKGQIAKSKELALAITLLACTLVLSalggYVANtlketMIYFLNNYLNM--NLNYNSLNSLAIIT 341

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825  74 MRVFFTLSLPFIAVCTIAGAVLTLLQTRFSIATEAIKLNFKALNPVQGFKKIFSMRTIKELVKSLLYLIVFACSCYSLIR 153
Cdd:PRK12772 342 LLRVAKIFLPVALPIMVFGVAANLLQTGFLFTKEPLKPDLKKLNPINGFKRMFSMRSVMELLKDLTIITIVGIVGYKFLQ 421

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825 154 ---VDLGQAISIYNGSI-----DVLISVWTALTMkaVMIFIAwsvfvlLIDFIAEYFLHSKDMKMDKHEVKQERKESDGN 225
Cdd:PRK12772 422 dnyLDILNLGNLYLPYIitelkSLVISIFFRITL--IMIIIA------VADYVYQKYQYNKDLRMTKQEVKEEYKQDEGD 493

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825 226 PEIKGARRRAHHEILSGEEMAAIRNSEVVMANPTHIAIAIYFNPDVASLPFIALRSTNMKARAAIAYAEKIGIPVVRYIP 305
Cdd:PRK12772 494 PQIKAKIKQKQREMAMQRMMQEVPKATVVVTNPTHIAVALKYEEGKDEAPKVVAKGADYVALKIKEIAKENDVPIIENKP 573


                 ....*.
gi 501410825 306 LARRLY 311
Cdd:PRK12772 574 LARLIY 579
flhB PRK12468
flagellar biosynthesis protein FlhB; Reviewed
 2-352 2.89e-30

flagellar biosynthesis protein FlhB; Reviewed


Pssm-ID: 171522  Cd Length: 386  Bit Score: 119.37  E-value: 2.89e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825   2 AEKTEKPTDKRRRDSAKKGQTFKSKDLITTTTLLAGVCYL---------------AYAINF-HPFISFYSLVLREGDKIs 65
Cdd:PRK12468   7 QEKSEEPTASKLEKAREKGQIPRSRELTSMLMLGAGLTILwmsgesmarqlsamvAQGLHFdHSMVSNDKQMLRQIGML- 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825  66 LNDFLVELMRVFFTLSLPFIAVCTIAGAVLtllqtrfsIATEAIKLNFKALNPVQGFKKIFSMRTIKELVKSLL--YLIV 143
Cdd:PRK12468  86 LRQTLLAMLPIFAGLVIVALAVPMLLGGVL--------FSGESIKFDLKRMSPVAGLKRMFSSQALAELLKAILkaTLVG 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825 144 FACSCY------SLIRVDLGQAISIYNGSIDVLISVWTALTMkAVMIFIAWSVFVLLIDfiaeyflHSKDMKMDKHEVKQ 217
Cdd:PRK12468 158 WVTGLFlwhnwpDMMRLIAAPPVAALGDALHLIIFCGLVVVL-GLSPMVGFDVFYQITS-------HIKKLRMTKQDIRD 229

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825 218 ERKESDGNPEIKGARRRAHHEILSGEEMAAIRNSEVVMANPTHIAIAIYFNPDVASLPFIALRSTNMKARAAIAYAEKIG 297
Cdd:PRK12468 230 EFKNQEGDPHVKGRIRQQQRAMARRRMMVDVPKADVIVTNPTHYAVALQYNESKMSAPKVLAKGAGAVALRIRELGAEHR 309

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825 298 IPVVRYIPLARRLYhnysQYSFISINDDALM--EVMDILIW---LRNVEAAGMDIPDKPD 352
Cdd:PRK12468 310 IPLLEAPPLARALF----RHSEVGQHIPATLyaAVAEVLAWvyqLKRWKREGGLIPKKPE 365
flhB PRK13109
flagellar biosynthesis protein FlhB; Reviewed
 4-311 2.94e-29

flagellar biosynthesis protein FlhB; Reviewed


Pssm-ID: 183864  Cd Length: 358  Bit Score: 116.05  E-value: 2.94e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825   4 KTEKPTDKRRRDSAKKGQTFKSKD---------LITTTTLLAGVCYLAYAINFHPFISFYS-LVLREGDKISLndFLVEL 73
Cdd:PRK13109  10 KTEEATERKVRDAIEKGDIPVSREapvfasmlgLLIALAFFARGQAAQLTGDLAPLLDDPRgFSLETGADAML--LLSRV 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825  74 MRVFFTLSLPFIAVCTIAGAVLTLLQTRFSIATEAIKLNFKALNPVQGFKKIFSMRTIKELVKSLLYLIVFACSCYSLIR 153
Cdd:PRK13109  88 ALAAGRFLLPILLILAVCGLAASLLQNLPRFVLDRIQPKWSRISPMKGWTRIFGTSGQVEFLKSLFKFLSVSVVVLLLLR 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825 154 VDLGQAISIYNGSIDVLISVWTALTMKAV-MIFIAWSVFVLLiDFIAEYFLHSKDMKMDKHEVKQERKESDGNPEIKG-- 230
Cdd:PRK13109 168 SERAKAVNAMFVDPSQLPELILTVAIRLVsAVAIATIVLVAL-DLVWARFHWRRSLRMTKQEIKDEHKQAEGDPSVKArl 246

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825 231 ---ARRRAHHEIlsgeeMAAIRNSEVVMANPTHIAIAIYFNPDVASLPFIALRSTNMKARAAIAYAEKIGIPVVRYIPLA 307
Cdd:PRK13109 247 rslAQDRARNRM-----LANVPRATLVIANPTHFAIALRYERSENPAPLVVAKGQDLIALKIREIAEENGIPVIEDKPLA 321


                 ....
gi 501410825 308 RRLY 311
Cdd:PRK13109 322 RSLY 325
flhB PRK12773
flagellar biosynthesis protein FlhB; Reviewed
 4-311 3.22e-25

flagellar biosynthesis protein FlhB; Reviewed


Pssm-ID: 183737  Cd Length: 646  Bit Score: 107.07  E-value: 3.22e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825   4 KTEKPTDKRRRDSAKKGQTFKSKDLITTTTLLAGVCyLAYAINFHPFISFYSLVLREGDKISL-----NDFLVELMRV-- 76
Cdd:PRK12773 300 RTEPGSERRRREEREKGNVPKSPELPAAVVLLAGVI-LVYLMGEYFFMRTYYILRKYIHGVGLrtdmsSESVTELLKNas 378

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825  77 --FFTLSLPFIAVCTIAGAVLTLLQTRFSIATEAIKLNFKALNPvqGFKKIFSMR-TIKELVKSLLYLIVFACSCYSLIR 153
Cdd:PRK12773 379 tdLFTLLWPLLGITLVGAIIGNVAQVGFIFTPRALSFNFSRIRP--NFKKVLPTRqTLFNLGKSLAKVGLIAWVSYIIIS 456

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501410825 154 VDLGQAISIYNGSIDVLISVWTALTMKAVMIFIAWSVFVLLIDFIAEYFLHSKDMKMDKHEVKQERKESDGNPEIKGARR 233
Cdd:PRK12773 457 KDFFPILLSGEMGLEQAVALVMNSSFKIFLIVGIILLAISIVDYLYQRYEYEESLKMTPSEAKREAKESDGDRSLQARRR 536

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 501410825 234 RAHHEILSGEEM-AAIRNSEVVMANPTHIAIAIYFNPDVASLPFIALRSTNMKARAAIAYAEKIGIPVVRYIPLARRLY 311
Cdd:PRK12773 537 QLARDMMNKRKMlAKVPEADVVITNPTHFAVALEYKPGIHKAPIVIAKGVDDFALLIIRIARENGVPTVEDRLQARGLY 615
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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