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Conserved domains on  [gi|501547253|ref|WP_012551810|]
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putrescine export ABC transporter permease SapC [Aliivibrio salmonicida]

Protein Classification

SapC family protein( domain architecture ID 11467928)

SapC family protein similar to Putrescine export system permease protein SapC, which is the transmembrane subunit (TM) of the periplasmic binding protein (PBP)-dependent ABC transporter complex (SapABCDF) involved in the export of antimicrobial peptides or putrescine, and is responsible for the translocation of the substrate across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SapC COG4171
ABC-type antimicrobial peptide export system, permease component SapC [Defense mechanisms];
1-295 1.10e-163

ABC-type antimicrobial peptide export system, permease component SapC [Defense mechanisms];


:

Pssm-ID: 443331 [Multi-domain]  Cd Length: 296  Bit Score: 456.59  E-value: 1.10e-163
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253   1 MRSNSVYQEEHIPTQMERFWLSYRANSLAMFGVWCLLLILLVTLFSPWLSPYDPQWQ-SENLLMPPSWSTEGDVAFFLGT 79
Cdd:COG4171    1 MPSDNIYEEERIPSPLKQIWQSFRKNPLAMIGLYGFLFLILLALFGPLLAPYSPDQQfIGALLLPPSWDDNGDVSFFLGT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253  80 DDLGRDILSRLLMGSQLTFGYALVVALFSGFVGCAIGIFAGMTKGLLSSTLNHLLDTILSIPSLLLAIIFVAFLGFGEFN 159
Cdd:COG4171   81 DDLGRDILSRLLYGARYTFGSALLVVLAAAIIGGIIGILAGMSRGLKSSILNHLLDTLLSIPSLLLAIIIVALLGPGLEN 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253 160 ILIAIWLALIPRFIRAVYTAVHNEIEKDYILAARLDGANDFYLLWNSVLPNILTIIIAEATLAISVAILDITALGFLGLG 239
Cdd:COG4171  161 AMLAITLALLPQFIHAIYQAVHQELKKEYVLAARLDGASNWQLLRYSILPNILEVLVTELTRALSIAILDISALGFLGLG 240

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 501547253 240 AQAPSPEWGSMLGDSIELIYTAPWTVTLPGIVITFTVIIVNLVGDGIQRALNAGIE 295
Cdd:COG4171  241 AQLPSPEWGAMLGDSLELIYLAPWTVILPGLAIMFSVLIVNLVGDGLRRALNKGVE 296
 
Name Accession Description Interval E-value
SapC COG4171
ABC-type antimicrobial peptide export system, permease component SapC [Defense mechanisms];
1-295 1.10e-163

ABC-type antimicrobial peptide export system, permease component SapC [Defense mechanisms];


Pssm-ID: 443331 [Multi-domain]  Cd Length: 296  Bit Score: 456.59  E-value: 1.10e-163
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253   1 MRSNSVYQEEHIPTQMERFWLSYRANSLAMFGVWCLLLILLVTLFSPWLSPYDPQWQ-SENLLMPPSWSTEGDVAFFLGT 79
Cdd:COG4171    1 MPSDNIYEEERIPSPLKQIWQSFRKNPLAMIGLYGFLFLILLALFGPLLAPYSPDQQfIGALLLPPSWDDNGDVSFFLGT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253  80 DDLGRDILSRLLMGSQLTFGYALVVALFSGFVGCAIGIFAGMTKGLLSSTLNHLLDTILSIPSLLLAIIFVAFLGFGEFN 159
Cdd:COG4171   81 DDLGRDILSRLLYGARYTFGSALLVVLAAAIIGGIIGILAGMSRGLKSSILNHLLDTLLSIPSLLLAIIIVALLGPGLEN 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253 160 ILIAIWLALIPRFIRAVYTAVHNEIEKDYILAARLDGANDFYLLWNSVLPNILTIIIAEATLAISVAILDITALGFLGLG 239
Cdd:COG4171  161 AMLAITLALLPQFIHAIYQAVHQELKKEYVLAARLDGASNWQLLRYSILPNILEVLVTELTRALSIAILDISALGFLGLG 240

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 501547253 240 AQAPSPEWGSMLGDSIELIYTAPWTVTLPGIVITFTVIIVNLVGDGIQRALNAGIE 295
Cdd:COG4171  241 AQLPSPEWGAMLGDSLELIYLAPWTVILPGLAIMFSVLIVNLVGDGLRRALNKGVE 296
PRK15111 PRK15111
peptide ABC transporter permease SapC;
1-295 1.84e-124

peptide ABC transporter permease SapC;


Pssm-ID: 185066 [Multi-domain]  Cd Length: 296  Bit Score: 357.09  E-value: 1.84e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253   1 MRSNSVYQEEHIPTQMERFWLSYRANSLAMFGVWCLLLILLVTLFSPWLSPY--DPQWQSENLLmPPSWSTEGDVAFFLG 78
Cdd:PRK15111   1 MPYDSVYSEKRPPGTLRTAWRKFYSDALAMVGLYGCAGLALLCLFGGWLAPYgiDQQFLGYQLL-PPSWSRYGEVSFFLG 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253  79 TDDLGRDILSRLLMGSQLTFGYALVVALFSGFVGCAIGIFAGMTKGLLSSTLNHLLDTILSIPSLLLAIIFVAFLGFGEF 158
Cdd:PRK15111  80 TDDLGRDVLSRLLSGAAPTVGGAFVVTLAATLCGLVLGVFAGATHGLRSAVLNHILDTLLSIPSLLLAIIVVAFAGPSLS 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253 159 NILIAIWLALIPRFIRAVYTAVHNEIEKDYILAARLDGANDFYLLWNSVLPNILTIIIAEATLAISVAILDITALGFLGL 238
Cdd:PRK15111 160 HAMFAVWLALLPRMVRSIYSAVHDELEKEYVIAARLDGASTLNILWYAVLPNITAGLVTEITRALSMAILDIAALGFLDL 239

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 501547253 239 GAQAPSPEWGSMLGDSIELIYTAPWTVTLPGIVITFTVIIVNLVGDGIQRALNAGIE 295
Cdd:PRK15111 240 GAQLPSPEWGAMLGDSLELIYVAPWTVMLPGAAIMLSVLLVNLLGDGIRRAIIAGVE 296
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 97-276 3.36e-16

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 75.01  E-value: 3.36e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253  97 TFGYALVVALFSGFVGCAIGIFAGMTKGLLSSTLNHLLDTILSIPSLLLAIIFVAFLG--------FGEFNILIAIWLAL 168
Cdd:cd06261    4 TLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGvllgwgilPGLGLPALILALLL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253 169 IPRFIRAVYTAVHNEIEKDYILAARLDGANDFYLLWNSVLPNILTIIIAEATLAISVAILDITALGFLGLGAqAPSPEWG 248
Cdd:cd06261   84 IAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGE-APGPGTG 162

                        170       180
                 ....*....|....*....|....*...
gi 501547253 249 SMLGDSIELIYTAPWTVTLPGIVITFTV 276
Cdd:cd06261  163 LLLIFAILFPGDLGVAAAVALILLLLSL 190
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 115-294 5.17e-13

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 66.17  E-value: 5.17e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253  115 IGIFAGM-TKGLLSSTLNHLLDTILSIPSLLLAIIFVAF-----LGFGEFNILIAIWLALIPRFIRAVYTAVhNEIEKDY 188
Cdd:pfam00528   4 LGIIAALrRGRRLDRLLRPLIDLLQALPSFVLAILLVVIailsiLGHGILPAIILALLGWAGYARLIRRAAL-RSLPSDL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253  189 ILAARLDGANDFYLLWNSVLPNILTIIIAEATLAISVAILDITALGFL----GLGAQAPSPEWGSMLGDsieliytapwt 264
Cdd:pfam00528  83 VEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgswpGLGLLLIEAILGYDYPE----------- 151

                         170       180       190
                  ....*....|....*....|....*....|
gi 501547253  265 VTLPGIVITFTVIIVNLVGDGIQRALNAGI 294
Cdd:pfam00528 152 IQGPVLAAALILLLLNLLVDILQRLLDPRV 181
PhnE TIGR01097
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound ...
 67-290 2.01e-07

phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions]


Pssm-ID: 273441 [Multi-domain]  Cd Length: 250  Bit Score: 51.00  E-value: 2.01e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253   67 WSTEGDVAFFLGTDDLGRDILSRLL---MGSQLTFGYALVVALFSGFVGCAIGIFAGMTKGLLSS-----------TLNH 132
Cdd:TIGR01097  22 ALLGFDLARLLAGPGQMADLLGRMFppdWSYLPRILKALLETLAMAILGTVLAAVLAVPLALLAArnitpspwlygLARL 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253  133 LLDTILSIPSLLLAIIFVAFLGFGEFNILIAIWLALIPRFIRAVYTAVhNEIEKDYILAARLDGANDFYLLWNSVLPNIL 212
Cdd:TIGR01097 102 LLNFLRAIPELVWALIFVAAVGLGPFAGVLALAFHTVGFLGKLFAEAI-EEVDPGPVEALRATGASKLQVIRYGVLPQVL 180

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 501547253  213 TIIIAEATLAISVAILDITALGFLGLGAqapspeWGSMLGDSIELIYTApwTVTLPGIVITFTVIIVNLVGDGIQRAL 290
Cdd:TIGR01097 181 PQFLSYTLYRFEINVRAAAVLGLVGAGG------IGLELDTAIGLFDYD--EVSAIILVILVVVVIIDLISARLRRRL 250
 
Name Accession Description Interval E-value
SapC COG4171
ABC-type antimicrobial peptide export system, permease component SapC [Defense mechanisms];
1-295 1.10e-163

ABC-type antimicrobial peptide export system, permease component SapC [Defense mechanisms];


Pssm-ID: 443331 [Multi-domain]  Cd Length: 296  Bit Score: 456.59  E-value: 1.10e-163
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253   1 MRSNSVYQEEHIPTQMERFWLSYRANSLAMFGVWCLLLILLVTLFSPWLSPYDPQWQ-SENLLMPPSWSTEGDVAFFLGT 79
Cdd:COG4171    1 MPSDNIYEEERIPSPLKQIWQSFRKNPLAMIGLYGFLFLILLALFGPLLAPYSPDQQfIGALLLPPSWDDNGDVSFFLGT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253  80 DDLGRDILSRLLMGSQLTFGYALVVALFSGFVGCAIGIFAGMTKGLLSSTLNHLLDTILSIPSLLLAIIFVAFLGFGEFN 159
Cdd:COG4171   81 DDLGRDILSRLLYGARYTFGSALLVVLAAAIIGGIIGILAGMSRGLKSSILNHLLDTLLSIPSLLLAIIIVALLGPGLEN 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253 160 ILIAIWLALIPRFIRAVYTAVHNEIEKDYILAARLDGANDFYLLWNSVLPNILTIIIAEATLAISVAILDITALGFLGLG 239
Cdd:COG4171  161 AMLAITLALLPQFIHAIYQAVHQELKKEYVLAARLDGASNWQLLRYSILPNILEVLVTELTRALSIAILDISALGFLGLG 240

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 501547253 240 AQAPSPEWGSMLGDSIELIYTAPWTVTLPGIVITFTVIIVNLVGDGIQRALNAGIE 295
Cdd:COG4171  241 AQLPSPEWGAMLGDSLELIYLAPWTVILPGLAIMFSVLIVNLVGDGLRRALNKGVE 296
PRK15111 PRK15111
peptide ABC transporter permease SapC;
1-295 1.84e-124

peptide ABC transporter permease SapC;


Pssm-ID: 185066 [Multi-domain]  Cd Length: 296  Bit Score: 357.09  E-value: 1.84e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253   1 MRSNSVYQEEHIPTQMERFWLSYRANSLAMFGVWCLLLILLVTLFSPWLSPY--DPQWQSENLLmPPSWSTEGDVAFFLG 78
Cdd:PRK15111   1 MPYDSVYSEKRPPGTLRTAWRKFYSDALAMVGLYGCAGLALLCLFGGWLAPYgiDQQFLGYQLL-PPSWSRYGEVSFFLG 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253  79 TDDLGRDILSRLLMGSQLTFGYALVVALFSGFVGCAIGIFAGMTKGLLSSTLNHLLDTILSIPSLLLAIIFVAFLGFGEF 158
Cdd:PRK15111  80 TDDLGRDVLSRLLSGAAPTVGGAFVVTLAATLCGLVLGVFAGATHGLRSAVLNHILDTLLSIPSLLLAIIVVAFAGPSLS 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253 159 NILIAIWLALIPRFIRAVYTAVHNEIEKDYILAARLDGANDFYLLWNSVLPNILTIIIAEATLAISVAILDITALGFLGL 238
Cdd:PRK15111 160 HAMFAVWLALLPRMVRSIYSAVHDELEKEYVIAARLDGASTLNILWYAVLPNITAGLVTEITRALSMAILDIAALGFLDL 239

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 501547253 239 GAQAPSPEWGSMLGDSIELIYTAPWTVTLPGIVITFTVIIVNLVGDGIQRALNAGIE 295
Cdd:PRK15111 240 GAQLPSPEWGAMLGDSLELIYVAPWTVMLPGAAIMLSVLLVNLLGDGIRRAIIAGVE 296
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 13-291 1.25e-83

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 252.73  E-value: 1.25e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253  13 PTQMERFWLSYRANSLAMFGVWCLLLILLVTLFSPWLSPYDPQWQS-ENLLMPPSWstegdvAFFLGTDDLGRDILSRLL 91
Cdd:COG1173    2 RSRWRRAWRRLRRNPLAVIGLVILLLLVLLALFAPLLAPYDPTAQDlAARLQPPSA------AHWLGTDQLGRDVLSRLL 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253  92 MGSQLTFGYALVVALFSGFVGCAIGIFAGMTKGLLSSTLNHLLDTILSIPSLLLAIIFVAFLGFGEFNILIAIWLALIPR 171
Cdd:COG1173   76 YGARISLLVGLLAVLIALVIGVLLGLLAGYFGGWVDAVLMRLVDVLLAFPSLLLAIALVAVLGPGLLNVILALGLTGWPG 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253 172 FIRAVYTAVHNEIEKDYILAARLDGANDFYLLWNSVLPNILTIIIAEATLAISVAILDITALGFLGLGAQAPSPEWGSML 251
Cdd:COG1173  156 YARLVRAQVLSLREREYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIASAILAEAGLSFLGLGVQPPTPSWGTML 235

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 501547253 252 GDSIELIYTAPWTVTLPGIVITFTVIIVNLVGDGIQRALN 291
Cdd:COG1173  236 SEGRNYLLTAPWLALFPGLAIVLTVLAFNLLGDGLRDALD 275
PRK10913 PRK10913
dipeptide ABC transporter permease DppC;
14-291 8.36e-67

dipeptide ABC transporter permease DppC;


Pssm-ID: 182833 [Multi-domain]  Cd Length: 300  Bit Score: 210.41  E-value: 8.36e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253  14 TQMERFWLSYRANSLAMFGVWCLLLILLVTLFSPWLSPYDPQWQ-SENLLMPPSWSTEGDVAFFLGTDDLGRDILSRLLM 92
Cdd:PRK10913  17 TPLQEFWHYFKRNKGAVVGLVYVVIMLFIAIFANWIAPHNPAEQfRDALLAPPVWQEGGSWAHILGTDDVGRDVLSRLMY 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253  93 GSQLTFGYALVVALFSGFVGCAIGIFAGMTKGLLSSTLNHLLDTILSIPSLLLAIIFVAFLGFGEFNILIAIWLALIPRF 172
Cdd:PRK10913  97 GARLSLLVGCLVVVLSLVMGVILGLIAGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPSIVNAALALTFVALPHY 176

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253 173 IRAVYTAVHNEIEKDYILAARLDGANDFYLLWNSVLPNILTIIIAEATLAISVAILDITALGFLGLGAQAPSPEWGSMLG 252
Cdd:PRK10913 177 VRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINILPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLS 256

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 501547253 253 DSIELIYTAPWTVTLPGIVITFTVIIVNLVGDGIQRALN 291
Cdd:PRK10913 257 DVLQFAQSAWWVVTFPGLAILLTVLAFNLMGDGLRDALD 295
PRK09881 PRK09881
D,D-dipeptide ABC transporter permease;
18-291 4.69e-50

D,D-dipeptide ABC transporter permease;


Pssm-ID: 182131 [Multi-domain]  Cd Length: 296  Bit Score: 167.30  E-value: 4.69e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253  18 RFWLSyRANSLAMFGVWCLLLILLVTLFSPWLSPYDPQWQS-ENLLMPPSwstegdVAFFLGTDDLGRDILSRLLMGSQL 96
Cdd:PRK09881  23 LVWML-KGSPLTVTGAVIIVLMLLMMIFSPWLATHDPNAIDlTARLLPPS------AAHWFGTDEVGRDLFSRVLVGSQQ 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253  97 TFGYALVVALFSGFVGCAIGIFAGMTKGLLSSTLNHLLDTILSIPSLLLAIIFVAFLGFGEFNILIAIWLALIPRFIRAV 176
Cdd:PRK09881  96 SILAGLVVVAIAGMIGSLLGCLSGVLGGRADAIIMRIMDIMLSIPSLVLTMALAAALGPSLFNAMLAIAIVRIPFYVRLA 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253 177 YTAVHNEIEKDYILAARLDGANDFYLLWNSVLPNILTIIIAEATLAISVAILDITALGFLGLGAQAPSPEWGSMLGDSIE 256
Cdd:PRK09881 176 RGQALVVRQYTYVQAAKTFGASRWHLISWHILRNSLPPLIVQASLDIGSAILMAATLGFIGLGAQQPSAEWGAMVANGRN 255

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 501547253 257 LIYTAPWTVTLPGIVITFTVIIVNLVGDGIQRALN 291
Cdd:PRK09881 256 YVLDQWWYCAFPGAAILLTAVGFNLFGDGIRDLLD 290
PRK15082 PRK15082
glutathione ABC transporter permease GsiD; Provisional
 8-295 5.79e-48

glutathione ABC transporter permease GsiD; Provisional


Pssm-ID: 185040 [Multi-domain]  Cd Length: 301  Bit Score: 162.21  E-value: 5.79e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253   8 QEEHIPTQMERFWLSYRANSLAMFGVWCLLLILLVTLFSPWLSPYDPQ--WQSENLLMPPSWstegdvAFFLGTDDLGRD 85
Cdd:PRK15082  17 KPDQVRTPWHEFWRRFRRQHVALVAGLFVLLLIVVAIFAPWIAPYDAEnyFDYDALNAGPSL------QHWFGVDSLGRD 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253  86 ILSRLLMGSQLTFGYALVVALFSGFVGCAIGIFAGMTKGLLSSTLNHLLDTILSIPSLLLAIIFVAFLGFGEFNILIAIW 165
Cdd:PRK15082  91 IFSRILVGARISLAAGFFSVAIGAAIGTVLGLLAGYYEGWWDRIIMRICDVLFAFPGILLAIAVVAILGSGMANVIIAVA 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253 166 LALIPRFIRAVYTAVHNEIEKDYILAARLDGANDFYLLWNSVLPNILTIIIAEATLAISVAILDITALGFLGLGAQAPSP 245
Cdd:PRK15082 171 IFSIPAFARLVRGNTLVLKQQTYIESARSIGASDWTILLRHILPGTVSSIVVYFTMRIGTSIITAASLSFLGLGAQPPTP 250

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 501547253 246 EWGSMLGDSIELIYTAPWTVTLPGIVITFTVIIVNLVGDGIQRALNAGIE 295
Cdd:PRK15082 251 EWGAMLNEARADMVIAPHVALFPSLAIFLTVLAFNLLGDGLRDALDPKIK 300
nikC PRK10417
nickel transporter permease NikC; Provisional
 45-292 5.65e-47

nickel transporter permease NikC; Provisional


Pssm-ID: 236687 [Multi-domain]  Cd Length: 272  Bit Score: 158.68  E-value: 5.65e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253  45 FSPWLSPYDPQwqSENL---LMPPSWstegdvAFFLGTDDLGRDILSRLLMGSQLTFGYALVVALFSGFVGCAIGIFAGM 121
Cdd:PRK10417  22 TSQWWLPYDPQ--AIDLpsrLLSPDA------QHWLGTDHLGRDIFSRLMAGTRVSLGSVMACLLLVLALGLVIGGSAGL 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253 122 TKGLLSSTLNHLLDTILSIPSLLLAIIFVAFLGFGEFNILIAIWLALIPRFIRAVYTAVHNEIEKDYILAARLDGANDFY 201
Cdd:PRK10417  94 LGGRVDQATMRVADMFMTFPTSILAFFMVGVLGTGLTNVIIAIALSHWAWYARMVRSLVISLRQREFVLAARLSGAGHVR 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253 202 LLWNSVLPNILTIIIAEATLAISVAILDITALGFLGLGAQAPSPEWGSMLGDSIELIYTAPWTVTLPGIVITFTVIIVNL 281
Cdd:PRK10417 174 VFIDHLLPAVIPQLLVLATLDIGHMMLHVAGLSFLGLGVTAPTAEWGVMINDARQYIWTQPLLMFWPGLALFISVMAFNL 253

                        250
                 ....*....|.
gi 501547253 282 VGDGIQRALNA 292
Cdd:PRK10417 254 LGDALRDHLDP 264
PRK15406 PRK15406
oligopeptide ABC transporter permease OppC; Provisional
 45-291 1.71e-26

oligopeptide ABC transporter permease OppC; Provisional


Pssm-ID: 185304 [Multi-domain]  Cd Length: 302  Bit Score: 105.69  E-value: 1.71e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253  45 FSPWLSPY---DPQWqsENLLMPPSWSTegdvAFFLGTDDLGRDILSRLLMGSQLTFGYALVVALFSGFVGCAIGIFAGM 121
Cdd:PRK15406  55 LAPMLSQFaydDTDW--GMMSSAPDMES----GHYFGTDSSGRDLLVRVAIGGRISLMVGVAAALVAVVVGTLYGSLSGY 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253 122 TKGLLSSTLNHLLDTILSIPSLLLAIIFVAFLGFGEFNILIAIWLALIPRFIRAVYTAVHNEIEKDYILAARLDGANDFY 201
Cdd:PRK15406 129 LGGKVDSVMMRLLEILNSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQVGGVSTRG 208

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253 202 LLWNSVLPNILTIIIAEATLAISVAILDITALGFLGLGAQAPSPEWGSMLGDSIELIYTAPWTVTLPGIVITFTVIIVNL 281
Cdd:PRK15406 209 IVLRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSDGANSMEVSPWLLLFPAGFLVVTLFCFNF 288

                        250
                 ....*....|
gi 501547253 282 VGDGIQRALN 291
Cdd:PRK15406 289 IGDGLRDALD 298
YejE COG4239
ABC-type microcin C transport system, permease component YejE [Secondary metabolites ...
 64-291 3.29e-25

ABC-type microcin C transport system, permease component YejE [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 443381 [Multi-domain]  Cd Length: 342  Bit Score: 102.92  E-value: 3.29e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253  64 PPSWSTegdvafFLGTDDLGRDILSRLLMGSQLTFGYALVVALFSGFVGCAIGIFAGMTKGLLSSTLNHLLDTILSIPSL 143
Cdd:COG4239  116 PPSAEN------WLGTDDQGRDVLARLIYGFRISVLFGLALTVISSVIGVAAGAVQGYFGGRVDLLFQRFIEIWSSMPEL 189

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253 144 LLAIIFVAFLGFGeFNILIAI-----WLALIPrFIRAVYTAVHNeieKDYILAARLDGANDFYLLWNSVLPNILTIIIAE 218
Cdd:COG4239  190 YLLIILSSIFQPS-FWLLLGIlllfgWMGLVG-VVRAEFLRARN---LEYVRAARALGVSDRRIMFRHILPNAMVATLTF 264

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 501547253 219 ATLAISVAILDITALGFLGLGAQAPSPEWGSMLGDSIELIyTAPWTVTLPGIVITFTVIIVNLVGDGIQRALN 291
Cdd:COG4239  265 LPFILSGAITTLTSLDFLGFGLPPGSPSLGELLAQGKNNL-QAPWLGLSAFVVLALMLSLLVFIGEAVRDAFD 336
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 97-276 3.36e-16

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 75.01  E-value: 3.36e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253  97 TFGYALVVALFSGFVGCAIGIFAGMTKGLLSSTLNHLLDTILSIPSLLLAIIFVAFLG--------FGEFNILIAIWLAL 168
Cdd:cd06261    4 TLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGvllgwgilPGLGLPALILALLL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253 169 IPRFIRAVYTAVHNEIEKDYILAARLDGANDFYLLWNSVLPNILTIIIAEATLAISVAILDITALGFLGLGAqAPSPEWG 248
Cdd:cd06261   84 IAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGE-APGPGTG 162

                        170       180
                 ....*....|....*....|....*...
gi 501547253 249 SMLGDSIELIYTAPWTVTLPGIVITFTV 276
Cdd:cd06261  163 LLLIFAILFPGDLGVAAAVALILLLLSL 190
PRK15021 PRK15021
microcin C ABC transporter permease; Provisional
 76-291 6.52e-14

microcin C ABC transporter permease; Provisional


Pssm-ID: 184982 [Multi-domain]  Cd Length: 341  Bit Score: 70.78  E-value: 6.52e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253  76 FLGTDDLGRDILSRLLMGSQLTFGYALVVALFSGFVGCAIGIFAGMTKGLLSSTLNHLLDTILSIPSLLLaIIFVAFLGF 155
Cdd:PRK15021 122 WLGTDANGGDVLARILYGTRISVLFGLMLTLCSSVMGVLAGALQGYYGGKVDLWGQRFIEVWSGMPTLFL-IILLSSVVQ 200

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253 156 GEFNILIAI-----WLALIPrFIRAVYTAVHNeieKDYILAARLDGANDFYLLWNSVLPNILTIIIAEATLAISVAILDI 230
Cdd:PRK15021 201 PNFWWLLAItvlfgWMSLVG-VVRAEFLRTRN---FDYIRAAQALGVSDRSIILRHMLPNAMVATLTFLPFILCSSITTL 276

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 501547253 231 TALGFLGLGAQAPSPEWGSMLGDSIELIyTAPWTVTLPGIVITFTVIIVNLVGDGIQRALN 291
Cdd:PRK15021 277 TSLDFLGFGLPLGSPSLGELLLQGKNNL-QAPWLGITAFLSVAILLSLLIFIGEAVRDAFD 336
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 115-294 5.17e-13

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 66.17  E-value: 5.17e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253  115 IGIFAGM-TKGLLSSTLNHLLDTILSIPSLLLAIIFVAF-----LGFGEFNILIAIWLALIPRFIRAVYTAVhNEIEKDY 188
Cdd:pfam00528   4 LGIIAALrRGRRLDRLLRPLIDLLQALPSFVLAILLVVIailsiLGHGILPAIILALLGWAGYARLIRRAAL-RSLPSDL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253  189 ILAARLDGANDFYLLWNSVLPNILTIIIAEATLAISVAILDITALGFL----GLGAQAPSPEWGSMLGDsieliytapwt 264
Cdd:pfam00528  83 VEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgswpGLGLLLIEAILGYDYPE----------- 151

                         170       180       190
                  ....*....|....*....|....*....|
gi 501547253  265 VTLPGIVITFTVIIVNLVGDGIQRALNAGI 294
Cdd:pfam00528 152 IQGPVLAAALILLLLNLLVDILQRLLDPRV 181
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 106-228 3.95e-08

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 53.23  E-value: 3.95e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253 106 LFSGFVGCAIGIFAGMTKgLLSSTLNHLLDTILSIPSLLLAIIFVAFLGFGEFNILIAIWLALIPRFIRAVYTAVHNeIE 185
Cdd:COG0600   75 ALAALLGVPLGLLLGLSR-LLRRLLDPLLVFLRPIPPLALAPLLILWFGIGEASKIFVIFLGAFFPILLNTAAGVRS-VD 152

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 501547253 186 KDYILAARLDGANDFYLLWNSVLPNILTIIIAEATLAISVAIL 228
Cdd:COG0600  153 PELLELARSLGASRWQILRKVVLPAALPYIFTGLRIALGLAWI 195
PhnE TIGR01097
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound ...
 67-290 2.01e-07

phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions]


Pssm-ID: 273441 [Multi-domain]  Cd Length: 250  Bit Score: 51.00  E-value: 2.01e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253   67 WSTEGDVAFFLGTDDLGRDILSRLL---MGSQLTFGYALVVALFSGFVGCAIGIFAGMTKGLLSS-----------TLNH 132
Cdd:TIGR01097  22 ALLGFDLARLLAGPGQMADLLGRMFppdWSYLPRILKALLETLAMAILGTVLAAVLAVPLALLAArnitpspwlygLARL 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253  133 LLDTILSIPSLLLAIIFVAFLGFGEFNILIAIWLALIPRFIRAVYTAVhNEIEKDYILAARLDGANDFYLLWNSVLPNIL 212
Cdd:TIGR01097 102 LLNFLRAIPELVWALIFVAAVGLGPFAGVLALAFHTVGFLGKLFAEAI-EEVDPGPVEALRATGASKLQVIRYGVLPQVL 180

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 501547253  213 TIIIAEATLAISVAILDITALGFLGLGAqapspeWGSMLGDSIELIYTApwTVTLPGIVITFTVIIVNLVGDGIQRAL 290
Cdd:TIGR01097 181 PQFLSYTLYRFEINVRAAAVLGLVGAGG------IGLELDTAIGLFDYD--EVSAIILVILVVVVIIDLISARLRRRL 250
PhnE COG3639
ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport ...
 87-239 4.61e-06

ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 442856 [Multi-domain]  Cd Length: 244  Bit Score: 47.00  E-value: 4.61e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253  87 LSRLLMGSQLTFGYALVVALFSGFVGCAIGIFA---GMTKGLLSSTLNHLLDTILSIPSLLLAIIFVAFLGFGEFNILIA 163
Cdd:COG3639   46 LPDLLSALLETLAIALLGTLLGAVLALPLAFLAarnLAPNPWVRLLARRLLNVLRAIPELVWALIFVAAVGLGPFAGVLA 125

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 501547253 164 IWLALIPrFIRAVYTAVHNEIEKDYILAARLDGANDFYLLWNSVLPNILTIIIAEATLAISVAILDITALGFLGLG 239
Cdd:COG3639  126 LAIHTIG-FLGKLFAEAIEEIDPGPVEALRATGASRLQVIRYGVLPQVLPQFLSYTLYRFEINIRAATVLGLVGAG 200
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 81-228 6.43e-06

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 46.98  E-value: 6.43e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253  81 DLGRDILSRL----LMGSQL--TFGYALVVALFSGFVGCAIGIFAGMTKGllsSTLNHLLDTI----LSIPSLLLAIIFV 150
Cdd:COG0601   76 DLGTSFVYGRpvsdLIAERLpvTLELALLALLLALLIGIPLGILAALRRG---SWLDRLITVLallgISIPSFWLGLLLI 152

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253 151 AFLGF--------GEFNILIAIW--------------LALIPRFIRAVYTAVHNEIEKDYILAARLDGANDFYLLWNSVL 208
Cdd:COG0601  153 LLFAVklgwlpvsGRVSPWEDFLdalrhlilpaltlaLGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHAL 232

                        170       180
                 ....*....|....*....|
gi 501547253 209 PNILTIIIaeATLAISVAIL 228
Cdd:COG0601  233 RNALIPVV--TVLGLQLGGL 250
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
97-237 3.60e-05

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 44.77  E-value: 3.60e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253  97 TFGYALVVALFSGFVGCAIGIFAGMTKGLLSSTLNHLLDTILSIPSLLLAI-IFVAFLGFGEFNI---LIAIWLALIPRF 172
Cdd:COG1178  343 SLLLALLAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVPGIVLGLgLLLLFNRPLPLLLygtLAILVLAYVVRF 422

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 501547253 173 ----IRAVYTAVHNeIEKDYILAARLDGANDFYLLWNSVLPNILTIIIAEATLAISVAILDITALGFLG 237
Cdd:COG1178  423 lpfaLRSLEAALAQ-IDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLR 490
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 98-217 4.34e-05

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 43.50  E-value: 4.34e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253  98 FGYALVVALFSGFVGCAIGIFAGMTKGLLSSTLNhLLDTILSIPSLLLAIIFVAFLGFGEFNILIAIWLALIPRFIRAVY 177
Cdd:COG1174   24 LLLVLLALLIALLIAVPLGILITRRRRLAGLVLG-VANILQTIPSLALLALLIPLLGIGPAPAIIALVLYALLPILRNTY 102

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 501547253 178 TAVhNEIEKDYILAARLDGANDFYLLWNSVLPNILTIIIA 217
Cdd:COG1174  103 TGL-RSVDPAVVEAARGMGMTPWQRLWRVELPLALPVILA 141
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 74-227 7.59e-05

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 43.20  E-value: 7.59e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253  74 AFFLGTDDLGRDILSRLLMGS-QLTFGYALVVALFSGFVGCAIGI------FAGmtKGLLSStlnhLLDTILSIPSLLLA 146
Cdd:COG0555   35 AAGLGWAEFWAVLTSPRVLAAlKLSLGTALIAALINLVFGLPLAWvlvryrFPG--KRLVDA----LVDLPFALPTAVAG 108

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547253 147 IIFVAFLG--------FGEFNILIA-----IWLALI----PRFIRAVYTAVhNEIEKDYILAARLDGANDFYLLWNSVLP 209
Cdd:COG0555  109 IALLLLFGpngwlgqlLAPLGIKVAftplgIVLAQTfvslPFVVRTVQPVL-EELDPELEEAAATLGASRWQTFRRVILP 187

                        170
                 ....*....|....*...
gi 501547253 210 NILTIIIAEATLAISVAI 227
Cdd:COG0555  188 LLLPALLTGFALAFARAL 205
OppC_N pfam12911
N-terminal TM domain of oligopeptide transport permease C; Oligopeptide permeases (Opp) have ...
 14-65 3.35e-03

N-terminal TM domain of oligopeptide transport permease C; Oligopeptide permeases (Opp) have been identified in numerous gram-negative and -positive bacteria. These transport systems belong to the superfamily of highly conserved ATP-binding cassette transporters. Typically, Opp importers comprise a complex of five proteins. The oligopeptide-binding protein OppA is responsible for the capture of peptides from the external medium. Two integral highly hydrophobic membrane spanning proteins, OppB and OppC, form a channel through the membrane used for peptide translocation. This N-terminal domain appears to be the first TM domain of the molecule.


Pssm-ID: 463747 [Multi-domain]  Cd Length: 53  Bit Score: 35.08  E-value: 3.35e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 501547253   14 TQMERFWLSYRANSLAMFGVWCLLLILLVTLFSPWLSPYDPQWQS-ENLLMPP 65
Cdd:pfam12911   1 SPWQDAWRRFRRNKLAMVGLVILLLLVLLAIFAPLLAPYDPDQQDlSADLLPP 53
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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