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Conserved domains on  [gi|501547264|ref|WP_012551821|]
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ABC transporter permease [Aliivibrio salmonicida]

Protein Classification

ABC transporter permease( domain architecture ID 11427288)

ABC transporter permease is the transmembrane subunit (TM) found in periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporters which generally bind type 2 PBPs

Gene Ontology:  GO:0022857|GO:0005524
PubMed:  35642569

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
19-269 8.97e-62

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


:

Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 195.37  E-value: 8.97e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547264  19 SKPMLQSVKSMIRILISAVVILGFWQFIVIVFALPSFILPNPLAVFTKLIQ--RYDVLLAHSWVTAQEILLGLGLGLSMG 96
Cdd:COG0600    2 TTSTRRRLRRLLLPLLSLALLLALWELAARLGLVPPFLLPSPSAVLAALVEllASGELWEHLLASLLRVLLGFALAALLG 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547264  97 LLFALQMLLFDPLRRWLLPILIASQAIPVFAIAPILMLWLGYGIASKVVMAALIIFFPVTTCCYDGLRNTPSGYLDLAHT 176
Cdd:COG0600   82 VPLGLLLGLSRLLRRLLDPLLVFLRPIPPLALAPLLILWFGIGEASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARS 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547264 177 MGASKWQLLKYVRLPAALPALASGIRVAVVVAPIGAVVGEWVGSSEGLGYLMLQANARMMIDEMFAALFILAALSVSLYF 256
Cdd:COG0600  162 LGASRWQILRKVVLPAALPYIFTGLRIALGLAWIGLVVAELLGASSGLGYLILDARQLLDTDLVFAAILVIGLLGLLLDL 241
                        250
                 ....*....|...
gi 501547264 257 LADVLIQKLIPWQ 269
Cdd:COG0600  242 LLRLLERRLLRWR 254
 
Name Accession Description Interval E-value
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
19-269 8.97e-62

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 195.37  E-value: 8.97e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547264  19 SKPMLQSVKSMIRILISAVVILGFWQFIVIVFALPSFILPNPLAVFTKLIQ--RYDVLLAHSWVTAQEILLGLGLGLSMG 96
Cdd:COG0600    2 TTSTRRRLRRLLLPLLSLALLLALWELAARLGLVPPFLLPSPSAVLAALVEllASGELWEHLLASLLRVLLGFALAALLG 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547264  97 LLFALQMLLFDPLRRWLLPILIASQAIPVFAIAPILMLWLGYGIASKVVMAALIIFFPVTTCCYDGLRNTPSGYLDLAHT 176
Cdd:COG0600   82 VPLGLLLGLSRLLRRLLDPLLVFLRPIPPLALAPLLILWFGIGEASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARS 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547264 177 MGASKWQLLKYVRLPAALPALASGIRVAVVVAPIGAVVGEWVGSSEGLGYLMLQANARMMIDEMFAALFILAALSVSLYF 256
Cdd:COG0600  162 LGASRWQILRKVVLPAALPYIFTGLRIALGLAWIGLVVAELLGASSGLGYLILDARQLLDTDLVFAAILVIGLLGLLLDL 241
                        250
                 ....*....|...
gi 501547264 257 LADVLIQKLIPWQ 269
Cdd:COG0600  242 LLRLLERRLLRWR 254
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
103-267 1.77e-22

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 91.21  E-value: 1.77e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547264  103 MLLFDPLRRWLLPILIASQAIPVFAIAPIL-----MLWLGYGIASKVVMAALIIFFPVTTCCYDGLRNTPSGYLDLAHTM 177
Cdd:pfam00528  10 LRRGRRLDRLLRPLIDLLQALPSFVLAILLvviaiLSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARAL 89
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547264  178 GASKWQLLKYVRLPAALPALASGIRVAVVVAPIGAVVGEWVGSSEGLGYLMLQANARMMIDEMFAALFILAALSVSLYFL 257
Cdd:pfam00528  90 GASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLL 169
                         170
                  ....*....|
gi 501547264  258 ADVLIQKLIP 267
Cdd:pfam00528 170 VDILQRLLDP 179
PRK10160 PRK10160
taurine ABC transporter permease TauC;
37-268 5.80e-17

taurine ABC transporter permease TauC;


Pssm-ID: 182276  Cd Length: 275  Bit Score: 78.29  E-value: 5.80e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547264  37 VVILGFWQFIVIVFALPSFILPNPLAVFTKLIQRYD-------VLLAHSWVTAQEILLGLGLGLSMGLLFALQMLLFDPL 109
Cdd:PRK10160  32 AVLLAVWWAVAALQLISPLFLPPPQQVLAKLLTIAGpqgfmdaTLWQHLAASLTRIVLALLAAVVIGIPVGIAMGLSPTV 111
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547264 110 RRWLLPILIASQAIPVFAIAPILMLWLGYGIASKVVMAALIIFFPVTTCCYDGLRNTPSGYLDLAHTMGASKWQLLKYVR 189
Cdd:PRK10160 112 RGILDPLIELYRPVPPLAYLPLMVIWFGIGETSKILLIYLAIFAPVAMSALAGVKSAQQVRIRAAQSLGASRAQVLWFVI 191
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 501547264 190 LPAALPALASGIRVAVVVAPIGAVVGEWVGSSEGLGYLMLQANARMMIDEMFAALFILAALSVSLYFLADVLIQKLIPW 268
Cdd:PRK10160 192 LPGALPEILTGLRIGLGVGWSTLVAAELIAATRGLGFMVQSAGEFLATDVVLAGIAVIAIIAFLLELGLRALQRRLTPW 270
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
108-252 2.53e-08

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 52.67  E-value: 2.53e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547264 108 PLRRWLLPILIASQAIPVFAIAPILMLWLGYGIASK---------VVMAALIIFFPVTTCCYDGLRNTPSGYLDLAHTMG 178
Cdd:cd06261   32 KLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGilpglglpaLILALLLIAPFARLIRRAALESIPKDLVEAARALG 111
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 501547264 179 ASKWQLLKYVRLPAALPALASGIRVAVVVAPIGAVVGEWVGSSE--GLGYLMLQANARMMIDEMFAALFILAALSV 252
Cdd:cd06261  112 ASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEapGPGTGLLLIFAILFPGDLGVAAAVALILLL 187
phosphate_pstC TIGR02138
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ...
127-201 2.77e-03

phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273992 [Multi-domain]  Cd Length: 295  Bit Score: 38.40  E-value: 2.77e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547264  127 AIAPILMLWLGYG-----------IASKVVMAALIIFFpVTTCCYDGLRNTPSGYLDLAHTMGASKWQLLKYVRLPAALP 195
Cdd:TIGR02138 128 FLKPHFQPFLGSNlgliplfggpiLTAGIVLAIMILPT-IASISRDALRAVPRSYKEASYALGATKWETIRRVILPAARS 206

                  ....*.
gi 501547264  196 ALASGI 201
Cdd:TIGR02138 207 GIVGAV 212
 
Name Accession Description Interval E-value
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
19-269 8.97e-62

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 195.37  E-value: 8.97e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547264  19 SKPMLQSVKSMIRILISAVVILGFWQFIVIVFALPSFILPNPLAVFTKLIQ--RYDVLLAHSWVTAQEILLGLGLGLSMG 96
Cdd:COG0600    2 TTSTRRRLRRLLLPLLSLALLLALWELAARLGLVPPFLLPSPSAVLAALVEllASGELWEHLLASLLRVLLGFALAALLG 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547264  97 LLFALQMLLFDPLRRWLLPILIASQAIPVFAIAPILMLWLGYGIASKVVMAALIIFFPVTTCCYDGLRNTPSGYLDLAHT 176
Cdd:COG0600   82 VPLGLLLGLSRLLRRLLDPLLVFLRPIPPLALAPLLILWFGIGEASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARS 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547264 177 MGASKWQLLKYVRLPAALPALASGIRVAVVVAPIGAVVGEWVGSSEGLGYLMLQANARMMIDEMFAALFILAALSVSLYF 256
Cdd:COG0600  162 LGASRWQILRKVVLPAALPYIFTGLRIALGLAWIGLVVAELLGASSGLGYLILDARQLLDTDLVFAAILVIGLLGLLLDL 241
                        250
                 ....*....|...
gi 501547264 257 LADVLIQKLIPWQ 269
Cdd:COG0600  242 LLRLLERRLLRWR 254
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
103-267 1.77e-22

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 91.21  E-value: 1.77e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547264  103 MLLFDPLRRWLLPILIASQAIPVFAIAPIL-----MLWLGYGIASKVVMAALIIFFPVTTCCYDGLRNTPSGYLDLAHTM 177
Cdd:pfam00528  10 LRRGRRLDRLLRPLIDLLQALPSFVLAILLvviaiLSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARAL 89
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547264  178 GASKWQLLKYVRLPAALPALASGIRVAVVVAPIGAVVGEWVGSSEGLGYLMLQANARMMIDEMFAALFILAALSVSLYFL 257
Cdd:pfam00528  90 GASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLL 169
                         170
                  ....*....|
gi 501547264  258 ADVLIQKLIP 267
Cdd:pfam00528 170 VDILQRLLDP 179
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
109-268 1.22e-17

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 78.94  E-value: 1.22e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547264 109 LRRWLLPILIASQAIPVFAIAPILMLWLGYGIASKVVMAALIIFFPVTTCCYDGLRNTPSGYLDLAHTMGASKWQLLKYV 188
Cdd:COG1174   51 LAGLVLGVANILQTIPSLALLALLIPLLGIGPAPAIIALVLYALLPILRNTYTGLRSVDPAVVEAARGMGMTPWQRLWRV 130
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547264 189 RLPAALPALASGIRVAVV----VAPIGAVVGewVGsseGLGYLMLQANARMMIDEMFAALFILAALSVSLYFLADVLIQK 264
Cdd:COG1174  131 ELPLALPVILAGIRTAAVqnigTATLAALIG--AG---GLGDLIFDGLQLNNTALILAGAILVALLALLVDLLLALLERL 205

                 ....
gi 501547264 265 LIPW 268
Cdd:COG1174  206 LTPR 209
PRK10160 PRK10160
taurine ABC transporter permease TauC;
37-268 5.80e-17

taurine ABC transporter permease TauC;


Pssm-ID: 182276  Cd Length: 275  Bit Score: 78.29  E-value: 5.80e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547264  37 VVILGFWQFIVIVFALPSFILPNPLAVFTKLIQRYD-------VLLAHSWVTAQEILLGLGLGLSMGLLFALQMLLFDPL 109
Cdd:PRK10160  32 AVLLAVWWAVAALQLISPLFLPPPQQVLAKLLTIAGpqgfmdaTLWQHLAASLTRIVLALLAAVVIGIPVGIAMGLSPTV 111
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547264 110 RRWLLPILIASQAIPVFAIAPILMLWLGYGIASKVVMAALIIFFPVTTCCYDGLRNTPSGYLDLAHTMGASKWQLLKYVR 189
Cdd:PRK10160 112 RGILDPLIELYRPVPPLAYLPLMVIWFGIGETSKILLIYLAIFAPVAMSALAGVKSAQQVRIRAAQSLGASRAQVLWFVI 191
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 501547264 190 LPAALPALASGIRVAVVVAPIGAVVGEWVGSSEGLGYLMLQANARMMIDEMFAALFILAALSVSLYFLADVLIQKLIPW 268
Cdd:PRK10160 192 LPGALPEILTGLRIGLGVGWSTLVAAELIAATRGLGFMVQSAGEFLATDVVLAGIAVIAIIAFLLELGLRALQRRLTPW 270
ssuC PRK11365
aliphatic sulfonate ABC transporter permease SsuC;
101-265 2.84e-15

aliphatic sulfonate ABC transporter permease SsuC;


Pssm-ID: 183100  Cd Length: 263  Bit Score: 73.43  E-value: 2.84e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547264 101 LQMLLFDPLRRWLLPILIAS----QAIPVFAIAPILMLWLGYGIASKVVMAALIIFFPVTTCCYDGLRNTPSGYLDLAHT 176
Cdd:PRK11365  81 LILGLISGLSRWGERLLDTSiqmlRNVPHLALIPLVILWFGIDESAKIFLVALGTLFPIYINTWHGIRNIDRGLVEMARS 160
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547264 177 MGASKWQLLKYVRLPAALPALASGIRVAVVVAPIGAVVGEWVGSSEGLGYLMLQANARMMIDEMFAALFILAALSVslyf 256
Cdd:PRK11365 161 YGLSGIPLFIHVILPGALPSIMVGVRFALGLMWLTLIVAETISANSGIGYLAMNAREFLQTDVVVVAIILYALLGK---- 236

                 ....*....
gi 501547264 257 LADVLIQKL 265
Cdd:PRK11365 237 LADVSAQLL 245
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
108-252 2.53e-08

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 52.67  E-value: 2.53e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547264 108 PLRRWLLPILIASQAIPVFAIAPILMLWLGYGIASK---------VVMAALIIFFPVTTCCYDGLRNTPSGYLDLAHTMG 178
Cdd:cd06261   32 KLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGilpglglpaLILALLLIAPFARLIRRAALESIPKDLVEAARALG 111
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 501547264 179 ASKWQLLKYVRLPAALPALASGIRVAVVVAPIGAVVGEWVGSSE--GLGYLMLQANARMMIDEMFAALFILAALSV 252
Cdd:cd06261  112 ASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEapGPGTGLLLIFAILFPGDLGVAAAVALILLL 187
MetP COG2011
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ...
163-265 6.41e-06

ABC-type methionine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 441614  Cd Length: 220  Bit Score: 45.82  E-value: 6.41e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547264 163 LRNTPSGYLDLAHTMGASKWQLLKYVRLPAALPALASGIRVAvVVAPIG--AVVGEwVGsSEGLGYLMLQAN-ARMMIDE 239
Cdd:COG2011  115 LREVDPGVIEAAQAMGASPWQIIFKVLLPEALPSLILGLTVT-LISLIGysAMAGA-VG-GGGLGDLAIRYGyQRFDTDV 191
                         90       100
                 ....*....|....*....|....*.
gi 501547264 240 MFAALFILAALSVSLYFLADVLIQKL 265
Cdd:COG2011  192 MLVTVVILIVLVQIIQFLGDRLARRL 217
PRK10952 PRK10952
proline/glycine betaine ABC transporter permease ProW;
115-235 9.45e-04

proline/glycine betaine ABC transporter permease ProW;


Pssm-ID: 236805  Cd Length: 355  Bit Score: 40.08  E-value: 9.45e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547264 115 PILIASQAIPVFA-IAPILMLWlGYGIASKVVMAALIIFFPVTTCCYDGLRNTPSGYLDLAHTMGASKWQLLKYVRLPAA 193
Cdd:PRK10952 183 PLLDAMQTTPAFVyLVPIVMLF-GIGNVPGVVVTIIFALPPIVRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLA 261
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 501547264 194 LPALASGIRVAVVVAPIGAVVGEWVGSSeGLGYLMLQANARM 235
Cdd:PRK10952 262 MPTIMAGVNQTLMLALSMVVIASMIAVG-GLGQMVLRGIGRL 302
PstC COG0573
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
109-201 1.40e-03

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440338 [Multi-domain]  Cd Length: 303  Bit Score: 39.30  E-value: 1.40e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547264 109 LRRWLLPI--LIAsqAIP--------VFAIAPILMLWL-----GYGI-ASKVVMAALIIFFpVTTCCYDGLRNTPSGYLD 172
Cdd:COG0573  112 LRRILKPAieLLA--GIPsvvygfwgLFVLVPLLRDLFpwppsGFSLlTAGIVLAIMILPT-ITSLSRDALRAVPRSLRE 188
                         90       100
                 ....*....|....*....|....*....
gi 501547264 173 LAHTMGASKWQLLKYVRLPAALPALASGI 201
Cdd:COG0573  189 AALALGATRWETIRKVVLPAARSGIIAAV 217
phosphate_pstC TIGR02138
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ...
127-201 2.77e-03

phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273992 [Multi-domain]  Cd Length: 295  Bit Score: 38.40  E-value: 2.77e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547264  127 AIAPILMLWLGYG-----------IASKVVMAALIIFFpVTTCCYDGLRNTPSGYLDLAHTMGASKWQLLKYVRLPAALP 195
Cdd:TIGR02138 128 FLKPHFQPFLGSNlgliplfggpiLTAGIVLAIMILPT-IASISRDALRAVPRSYKEASYALGATKWETIRRVILPAARS 206

                  ....*.
gi 501547264  196 ALASGI 201
Cdd:TIGR02138 207 GIVGAV 212
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
108-200 3.22e-03

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 38.17  E-value: 3.22e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547264 108 PLRRWLLPILIASQAIP--VFAIApILMLWLGYGIASK---VVMAALIIFFP-VTTCCYDGLRNTPSGYLDLAHTMGASK 181
Cdd:COG1177   94 RGRRLLLALLLLPLVVPgiVLGVA-LLLLFSALGLSGGlwgLILAHVVFTLPfVVLVVLARLQGFDPSLEEAARDLGASP 172
                         90
                 ....*....|....*....
gi 501547264 182 WQLLKYVRLPAALPALASG 200
Cdd:COG1177  173 WQTFRRVTLPLIAPGILAG 191
PstA COG0581
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
139-210 7.67e-03

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440346 [Multi-domain]  Cd Length: 259  Bit Score: 36.94  E-value: 7.67e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 501547264 139 GIASKVVMAALIIffP-VTTCCYDGLRNTPSGYLDLAHTMGASKWQLLKYVRLPAALPALASGI-----RVAVVVAPI 210
Cdd:COG0581  114 LLAGALALALLML--PvVIRTTEEALRLVPNSLREASYALGATKWQTIRKVVLPAALPGILTGVilaiaRAAGETAPL 189
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
108-200 7.85e-03

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 37.45  E-value: 7.85e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501547264 108 PLRRWLLPILIASQAIPVFAIAPILMLWLGY-GIASKVVMAALIIFFP-------------------VTTCCYDGLRNTP 167
Cdd:COG1178   87 PGRRLLRWLLLLPLALPPYVVALAWIALFGPnGLLNTLLRALFGLEPPdiyglggiilvlvlfnypyVYLLLRAALRSID 166
                         90       100       110
                 ....*....|....*....|....*....|...
gi 501547264 168 SGYLDLAHTMGASKWQLLKYVRLPAALPALASG 200
Cdd:COG1178  167 ASLEEAARSLGASPWRAFRRVTLPLLRPAIAAG 199
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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