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Conserved domains on  [gi|501857384|ref|WP_012658749|]
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MULTISPECIES: exodeoxyribonuclease VII small subunit [Bacilli]

Protein Classification

exodeoxyribonuclease VII small subunit( domain architecture ID 10011590)

small subunit of exodeoxyribonuclease VII, which degrades single-stranded DNA bidirectionally into nucleoside 5'-phosphates

EC:  3.1.11.6
Gene Ontology:  GO:0008855|GO:0004527|GO:0006308
PubMed:  6284744
SCOP:  4002913

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK00977 PRK00977
exodeoxyribonuclease VII small subunit; Provisional
 1-71 3.21e-19

exodeoxyribonuclease VII small subunit; Provisional


:

Pssm-ID: 179195  Cd Length: 80  Bit Score: 73.40  E-value: 3.21e-19
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 501857384  1 MATKKTFEERLQELETIVSKLESGEVPLEEAIAEFQKGMILSKDLQKTLQNAEKTLVKVMQADGSEIEIED 71
Cdd:PRK00977  6 KSKPLSFEEALAELEEIVTRLESGDLPLEESLAAFERGVALARQCQKKLQQAEQRVEKLLDEDGKEASLEP 76
 
Name Accession Description Interval E-value
PRK00977 PRK00977
exodeoxyribonuclease VII small subunit; Provisional
 1-71 3.21e-19

exodeoxyribonuclease VII small subunit; Provisional


Pssm-ID: 179195  Cd Length: 80  Bit Score: 73.40  E-value: 3.21e-19
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 501857384  1 MATKKTFEERLQELETIVSKLESGEVPLEEAIAEFQKGMILSKDLQKTLQNAEKTLVKVMQADGSEIEIED 71
Cdd:PRK00977  6 KSKPLSFEEALAELEEIVTRLESGDLPLEESLAAFERGVALARQCQKKLQQAEQRVEKLLDEDGKEASLEP 76
XseB COG1722
Exonuclease VII small subunit [Replication, recombination and repair];
2-68 4.50e-14

Exonuclease VII small subunit [Replication, recombination and repair];


Pssm-ID: 441328  Cd Length: 74  Bit Score: 60.25  E-value: 4.50e-14
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 501857384  2 ATKKTFEERLQELETIVSKLESGEVPLEEAIAEFQKGMILSKDLQKTLQNAEKTLVKVMQADGSEIE 68
Cdd:COG1722   2 KKELSFEEALAELEEIVERLESGELPLEESLALYERGVALAKRCQKKLDEAEQKVEKLLEDEDGELE 68
xseB TIGR01280
exodeoxyribonuclease VII, small subunit; This protein is the small subunit for ...
 6-59 3.50e-12

exodeoxyribonuclease VII, small subunit; This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides. [DNA metabolism, Degradation of DNA]


Pssm-ID: 273536  Cd Length: 54  Bit Score: 54.74  E-value: 3.50e-12
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 501857384   6 TFEERLQELETIVSKLESGEVPLEEAIAEFQKGMILSKDLQKTLQNAEKTLVKV 59
Cdd:TIGR01280  1 SFEEALAELEEIVEKLESGDLSLEESLKLYEEGIKLLKHCQKKLEEAEQKIEKL 54
Exonuc_VII_S pfam02609
Exonuclease VII small subunit; This family consist of exonuclease VII, small subunit EC:3.1.11. ...
 7-54 2.34e-11

Exonuclease VII small subunit; This family consist of exonuclease VII, small subunit EC:3.1.11.6 This enzyme catalyzes exonucleolytic cleavage in either 5'->3' or 3'->5' direction to yield 5'-phosphomononucleotides. This exonuclease VII enzyme is composed of one large subunit and 4 small ones.


Pssm-ID: 460618  Cd Length: 51  Bit Score: 52.77  E-value: 2.34e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 501857384   7 FEERLQELETIVSKLESGEVPLEEAIAEFQKGMILSKDLQKTLQNAEK 54
Cdd:pfam02609  1 FEEALAELEEIVEKLESGELSLEESLKLYEEGIKLLKFCEKKLDEAEQ 48
 
Name Accession Description Interval E-value
PRK00977 PRK00977
exodeoxyribonuclease VII small subunit; Provisional
 1-71 3.21e-19

exodeoxyribonuclease VII small subunit; Provisional


Pssm-ID: 179195  Cd Length: 80  Bit Score: 73.40  E-value: 3.21e-19
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 501857384  1 MATKKTFEERLQELETIVSKLESGEVPLEEAIAEFQKGMILSKDLQKTLQNAEKTLVKVMQADGSEIEIED 71
Cdd:PRK00977  6 KSKPLSFEEALAELEEIVTRLESGDLPLEESLAAFERGVALARQCQKKLQQAEQRVEKLLDEDGKEASLEP 76
XseB COG1722
Exonuclease VII small subunit [Replication, recombination and repair];
2-68 4.50e-14

Exonuclease VII small subunit [Replication, recombination and repair];


Pssm-ID: 441328  Cd Length: 74  Bit Score: 60.25  E-value: 4.50e-14
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 501857384  2 ATKKTFEERLQELETIVSKLESGEVPLEEAIAEFQKGMILSKDLQKTLQNAEKTLVKVMQADGSEIE 68
Cdd:COG1722   2 KKELSFEEALAELEEIVERLESGELPLEESLALYERGVALAKRCQKKLDEAEQKVEKLLEDEDGELE 68
xseB TIGR01280
exodeoxyribonuclease VII, small subunit; This protein is the small subunit for ...
 6-59 3.50e-12

exodeoxyribonuclease VII, small subunit; This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides. [DNA metabolism, Degradation of DNA]


Pssm-ID: 273536  Cd Length: 54  Bit Score: 54.74  E-value: 3.50e-12
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 501857384   6 TFEERLQELETIVSKLESGEVPLEEAIAEFQKGMILSKDLQKTLQNAEKTLVKV 59
Cdd:TIGR01280  1 SFEEALAELEEIVEKLESGDLSLEESLKLYEEGIKLLKHCQKKLEEAEQKIEKL 54
Exonuc_VII_S pfam02609
Exonuclease VII small subunit; This family consist of exonuclease VII, small subunit EC:3.1.11. ...
 7-54 2.34e-11

Exonuclease VII small subunit; This family consist of exonuclease VII, small subunit EC:3.1.11.6 This enzyme catalyzes exonucleolytic cleavage in either 5'->3' or 3'->5' direction to yield 5'-phosphomononucleotides. This exonuclease VII enzyme is composed of one large subunit and 4 small ones.


Pssm-ID: 460618  Cd Length: 51  Bit Score: 52.77  E-value: 2.34e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 501857384   7 FEERLQELETIVSKLESGEVPLEEAIAEFQKGMILSKDLQKTLQNAEK 54
Cdd:pfam02609  1 FEEALAELEEIVEKLESGELSLEESLKLYEEGIKLLKFCEKKLDEAEQ 48
PRK14063 PRK14063
exodeoxyribonuclease VII small subunit; Provisional
 1-64 4.56e-11

exodeoxyribonuclease VII small subunit; Provisional


Pssm-ID: 184483  Cd Length: 76  Bit Score: 52.52  E-value: 4.56e-11
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 501857384  1 MATKKTFEERLQELETIVSKLESGEVPLEEAIAEFQKGMILSKDLQKTLQNAEKTLVKVMQADG 64
Cdd:PRK14063  1 MENKLSFEEAISQLEHLVSKLEQGDVPLEEAISYFKEGMELSKLCDEKLKNVQEQMAVILGEDG 64
PRK14064 PRK14064
exodeoxyribonuclease VII small subunit; Provisional
 4-70 5.87e-08

exodeoxyribonuclease VII small subunit; Provisional


Pssm-ID: 172554  Cd Length: 75  Bit Score: 44.83  E-value: 5.87e-08
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 501857384  4 KKTFEERLQELETIVSKLESGEVPLEEAIAEFQKGMILSKDLQKTLQNAEKTLVKVMQADGSEIEIE 70
Cdd:PRK14064  5 KKTFEEAIAELETIVEALENGSASLEDSLDMYQKGIELTKLCQDKLQSAEKRMAKVVTDAGEEIPFE 71
PRK14068 PRK14068
exodeoxyribonuclease VII small subunit; Provisional
 1-71 5.94e-08

exodeoxyribonuclease VII small subunit; Provisional


Pssm-ID: 184485  Cd Length: 76  Bit Score: 44.86  E-value: 5.94e-08
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 501857384  1 MATKKTFEERLQELETIVSKLESGEVPLEEAIAEFQKGMILSKDLQKTLQNAEKTLVKVMQADGSEIEIED 71
Cdd:PRK14068  2 TKETQSFEEMMQELEQIVQKLDNETVSLEESLDLYQRGMKLSAACDTTLKNAEKKVNDLIKEEAEDVKNDE 72
PRK14067 PRK14067
exodeoxyribonuclease VII small subunit; Provisional
 5-52 9.97e-08

exodeoxyribonuclease VII small subunit; Provisional


Pssm-ID: 172557  Cd Length: 80  Bit Score: 44.42  E-value: 9.97e-08
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*...
gi 501857384  5 KTFEERLQELETIVSKLESGEVPLEEAIAEFQKGMILSKDLQKTLQNA 52
Cdd:PRK14067  7 ADFEQQLARLQEIVDALEGGDLPLEESVALYKEGLGLARACREQLAKA 54
PRK14066 PRK14066
exodeoxyribonuclease VII small subunit; Provisional
 1-65 2.10e-04

exodeoxyribonuclease VII small subunit; Provisional


Pssm-ID: 172556  Cd Length: 75  Bit Score: 35.58  E-value: 2.10e-04
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 501857384  1 MATKKtFEERLQELETIVSKLESGEVPLEEAIAEFQKGMILSKDLQKTLQNAEKTL-VKVMQADGS 65
Cdd:PRK14066  1 MAVEK-FETALKKLEEVVKKLEGGELSLDDSLKAFEEGVKHAAFCSKKLDEAERRVeVLLKQKDGS 65
PRK14069 PRK14069
exodeoxyribonuclease VII small subunit; Provisional
 3-53 1.33e-03

exodeoxyribonuclease VII small subunit; Provisional


Pssm-ID: 172559  Cd Length: 95  Bit Score: 33.84  E-value: 1.33e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|.
gi 501857384  3 TKKTFEERLQELETIVSKLESGEVPLEEAIAEFQKGMILSKDLQKTLQNAE 53
Cdd:PRK14069  6 SKISFEDALRELEQIAEKLERQDFSLEESLKAYERGMELKKICSGILDDAE 56
PRK14070 PRK14070
exodeoxyribonuclease VII small subunit; Provisional
 11-68 2.67e-03

exodeoxyribonuclease VII small subunit; Provisional


Pssm-ID: 184486  Cd Length: 69  Bit Score: 32.69  E-value: 2.67e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 501857384 11 LQELETIVSKLESGEVPLEEAIAEFQKGMILSKDLQKTLQNAEKTLVKVMQADGSEIE 68
Cdd:PRK14070  1 MKELEEIVNRLENEDLPLEESIKLFERGVELYRKCKEILQQNRLKIIDVMKELEGEID 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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