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Conserved domains on  [gi|502303556|ref|WP_012757307|]
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Dabb family protein [Rhizobium leguminosarum]

Protein Classification

Dabb family protein( domain architecture ID 10658046)

Dabb (dimeric A/B barrel) family protein similar to Passiflora edulis hydroxynitrile lyase involved in the synthesis of chiral cyanohydrins

CATH:  3.30.70.100
SCOP:  4000637

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Dabb smart00886
Stress responsive A/B Barrel Domain; The function of this domain is unknown, but it is ...
 2-94 5.00e-20

Stress responsive A/B Barrel Domain; The function of this domain is unknown, but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar). It is also found at the C-terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus.It is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The structure of one has been solved and the domain forms an alpha-beta barrel dimer. Although there is a clear duplication within the domain it is not obviously detectable in the sequence.


:

Pssm-ID: 214884  Cd Length: 97  Bit Score: 76.94  E-value: 5.00e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502303556    2 IRHTVAFRLKHEAGSAEETSFLADALVLAN-IPSVRNFEQLRQTSP---KNAFAFGFSMEFDDQAGYDTYNLHPLHVAFV 77
Cdd:smart00886  1 IRHIVLFKLKDDASEEDIEELLEALEALKGlIPGILSIEVGRNVSPegrSGGYDHVLVSEFEDEEDLDAYQVHPAHVAVV 80

                          90
                  ....*....|....*..
gi 502303556   78 RDRWVPEVADFLEIDYT 94
Cdd:smart00886 81 ERLVPPLAEDRVVVDFE 97
 
Name Accession Description Interval E-value
Dabb smart00886
Stress responsive A/B Barrel Domain; The function of this domain is unknown, but it is ...
 2-94 5.00e-20

Stress responsive A/B Barrel Domain; The function of this domain is unknown, but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar). It is also found at the C-terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus.It is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The structure of one has been solved and the domain forms an alpha-beta barrel dimer. Although there is a clear duplication within the domain it is not obviously detectable in the sequence.


Pssm-ID: 214884  Cd Length: 97  Bit Score: 76.94  E-value: 5.00e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502303556    2 IRHTVAFRLKHEAGSAEETSFLADALVLAN-IPSVRNFEQLRQTSP---KNAFAFGFSMEFDDQAGYDTYNLHPLHVAFV 77
Cdd:smart00886  1 IRHIVLFKLKDDASEEDIEELLEALEALKGlIPGILSIEVGRNVSPegrSGGYDHVLVSEFEDEEDLDAYQVHPAHVAVV 80

                          90
                  ....*....|....*..
gi 502303556   78 RDRWVPEVADFLEIDYT 94
Cdd:smart00886 81 ERLVPPLAEDRVVVDFE 97
Dabb pfam07876
Stress responsive A/B Barrel Domain; The function of this family is unknown, but it is ...
 2-94 6.89e-15

Stress responsive A/B Barrel Domain; The function of this family is unknown, but it is upregulated in response to salt stress in Populus balsamifera. It is also found at the C-terminus of an fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus. Swiss:Q93NG5 is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The structure of one has been solved and the domain forms an a/b barrel dimer. Although there is a clear duplication within the domain it is not obviously detectable in the sequence.


Pssm-ID: 400293  Cd Length: 96  Bit Score: 63.85  E-value: 6.89e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502303556   2 IRHTVAFRLKHEAGSAEETSFLADALVLAN-IPSVRNFEQLRQTSP--KNAFAFGFSMEFDDQAGYDTYNLHPLHVAFVR 78
Cdd:pfam07876  1 IKHIVLFKLKDDAADEEIAEVLEGLEALAGkIPGIKSIEVGRNVSPegAQGYDHVLISTFESLEDLKAYLAHPAHVEFVE 80

                         90
                 ....*....|....*.
gi 502303556  79 dRWVPEVADFLEIDYT 94
Cdd:pfam07876 81 -LVKPLVEDRVVVDFE 95
 
Name Accession Description Interval E-value
Dabb smart00886
Stress responsive A/B Barrel Domain; The function of this domain is unknown, but it is ...
 2-94 5.00e-20

Stress responsive A/B Barrel Domain; The function of this domain is unknown, but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar). It is also found at the C-terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus.It is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The structure of one has been solved and the domain forms an alpha-beta barrel dimer. Although there is a clear duplication within the domain it is not obviously detectable in the sequence.


Pssm-ID: 214884  Cd Length: 97  Bit Score: 76.94  E-value: 5.00e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502303556    2 IRHTVAFRLKHEAGSAEETSFLADALVLAN-IPSVRNFEQLRQTSP---KNAFAFGFSMEFDDQAGYDTYNLHPLHVAFV 77
Cdd:smart00886  1 IRHIVLFKLKDDASEEDIEELLEALEALKGlIPGILSIEVGRNVSPegrSGGYDHVLVSEFEDEEDLDAYQVHPAHVAVV 80

                          90
                  ....*....|....*..
gi 502303556   78 RDRWVPEVADFLEIDYT 94
Cdd:smart00886 81 ERLVPPLAEDRVVVDFE 97
Dabb pfam07876
Stress responsive A/B Barrel Domain; The function of this family is unknown, but it is ...
 2-94 6.89e-15

Stress responsive A/B Barrel Domain; The function of this family is unknown, but it is upregulated in response to salt stress in Populus balsamifera. It is also found at the C-terminus of an fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus. Swiss:Q93NG5 is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The structure of one has been solved and the domain forms an a/b barrel dimer. Although there is a clear duplication within the domain it is not obviously detectable in the sequence.


Pssm-ID: 400293  Cd Length: 96  Bit Score: 63.85  E-value: 6.89e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502303556   2 IRHTVAFRLKHEAGSAEETSFLADALVLAN-IPSVRNFEQLRQTSP--KNAFAFGFSMEFDDQAGYDTYNLHPLHVAFVR 78
Cdd:pfam07876  1 IKHIVLFKLKDDAADEEIAEVLEGLEALAGkIPGIKSIEVGRNVSPegAQGYDHVLISTFESLEDLKAYLAHPAHVEFVE 80

                         90
                 ....*....|....*.
gi 502303556  79 dRWVPEVADFLEIDYT 94
Cdd:pfam07876 81 -LVKPLVEDRVVVDFE 95
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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