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Conserved domains on  [gi|502304146|ref|WP_012757549|]
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membrane protein insertion efficiency factor YidD [Rhizobium leguminosarum]

Protein Classification

membrane protein insertion efficiency factor YidD( domain architecture ID 10002375)

membrane protein insertion efficiency factor YidD may be involved in the insertion of integral membrane proteins into the membrane

Gene Ontology:  GO:0005886

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YidD COG0759
Membrane-anchored protein YidD, putatitve component of membrane protein insertase Oxa1/YidC ...
 40-110 1.81e-30

Membrane-anchored protein YidD, putatitve component of membrane protein insertase Oxa1/YidC/SpoIIIJ [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 440522  Cd Length: 71  Bit Score: 104.05  E-value: 1.81e-30
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 502304146  40 KSPDRLLGMGLIRLYQLTLSGFIGNSCRHIPTCSEYGYESIARHGLWAGGWMTLFRVGRCGPGGTSGLDQV 110
Cdd:COG0759    1 KSLMKRLLIGLIRFYQRFISPLLGPRCRFYPTCSEYALEAIERHGLLKGSWLTLKRILRCHPWHPGGYDPV 71
 
Name Accession Description Interval E-value
YidD COG0759
Membrane-anchored protein YidD, putatitve component of membrane protein insertase Oxa1/YidC ...
 40-110 1.81e-30

Membrane-anchored protein YidD, putatitve component of membrane protein insertase Oxa1/YidC/SpoIIIJ [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440522  Cd Length: 71  Bit Score: 104.05  E-value: 1.81e-30
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 502304146  40 KSPDRLLGMGLIRLYQLTLSGFIGNSCRHIPTCSEYGYESIARHGLWAGGWMTLFRVGRCGPGGTSGLDQV 110
Cdd:COG0759    1 KSLMKRLLIGLIRFYQRFISPLLGPRCRFYPTCSEYALEAIERHGLLKGSWLTLKRILRCHPWHPGGYDPV 71
YidD pfam01809
Putative membrane protein insertion efficiency factor; This family consists of membrane ...
 48-110 6.52e-27

Putative membrane protein insertion efficiency factor; This family consists of membrane insertion efficiency factor proteins. They contain three conserved cysteine residues. Family members such as YidD may be involved in insertion of integral membrane proteins into the membrane by assisting YidC (membrane protein insertase). Some members of the yidD family have been previously thought to posses alpha-hemolysin activity, however no sufficient evidence was found to corroborate this idea. Secondary structure prediction indicated the presence of three alpha-helices in YidD. None of the three alpha-helices appeared sufficiently hydrophobic to serve as a transmembrane, suggesting a cytoplasmic localization for YidD. However, a closer examination of the alpha-helical wheel projection of the predicted first alpha-helix in YidD suggested an amphipathic structure in its N-terminal region which might be involved in membrane targeting.


Pssm-ID: 460342  Cd Length: 67  Bit Score: 95.14  E-value: 6.52e-27
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 502304146   48 MGLIRLYQLTLSGFIGNSCRHIPTCSEYGYESIARHGLWAGGWMTLFRVGRCGPGGTSGLDQV 110
Cdd:pfam01809   5 IGLIRFYQRFISPLLPPSCRFYPTCSEYAIEAIEKHGALKGGWLALKRILRCHPFHPGGYDPV 67
TIGR00278 TIGR00278
putative membrane protein insertion efficiency factor; This model describes a family, YidD, of ...
 50-112 4.69e-20

putative membrane protein insertion efficiency factor; This model describes a family, YidD, of small, non-essential proteins now suggested to improve YidC-dependent inner membrane protein insertion. A related protein is found in the temperature phage HP1 of Haemophilus influenzae. Annotation of some members of this family as hemolysins appears to represent propagation from an unpublished GenBank submission, L36462, attributed to Aeromonas hydrophila but a close match to E. coli. [Hypothetical proteins, Conserved]


Pssm-ID: 272995  Cd Length: 75  Bit Score: 77.88  E-value: 4.69e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 502304146   50 LIRLYQLTLSGFIGNSCRHIPTCSEYGYESIARHGLWAGGWMTLFRVGRCGPGGTSGLDQVPE 112
Cdd:TIGR00278   4 LIRGYQIFISPFFPPSCRFYPTCSQYAIEALKTHGFLKGGWLTLKRILRCHPLHPGGNDPVPK 66
PRK14386 PRK14386
membrane protein insertion efficiency factor YidD;
50-111 4.32e-19

membrane protein insertion efficiency factor YidD;


Pssm-ID: 172862  Cd Length: 106  Bit Score: 76.22  E-value: 4.32e-19
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 502304146  50 LIRLYQLTLSGFIGNSCRHIPTCSEYGYESIARHGLWAGGWMTLFRVGRCGPGGTSGLDQVP 111
Cdd:PRK14386   8 FIRLYQIAISPLLGPRCRYIPTCSQYALEALQTHGAIKGVWLSSKRICRCHPWGGSGYDPVP 69
 
Name Accession Description Interval E-value
YidD COG0759
Membrane-anchored protein YidD, putatitve component of membrane protein insertase Oxa1/YidC ...
 40-110 1.81e-30

Membrane-anchored protein YidD, putatitve component of membrane protein insertase Oxa1/YidC/SpoIIIJ [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440522  Cd Length: 71  Bit Score: 104.05  E-value: 1.81e-30
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 502304146  40 KSPDRLLGMGLIRLYQLTLSGFIGNSCRHIPTCSEYGYESIARHGLWAGGWMTLFRVGRCGPGGTSGLDQV 110
Cdd:COG0759    1 KSLMKRLLIGLIRFYQRFISPLLGPRCRFYPTCSEYALEAIERHGLLKGSWLTLKRILRCHPWHPGGYDPV 71
YidD pfam01809
Putative membrane protein insertion efficiency factor; This family consists of membrane ...
 48-110 6.52e-27

Putative membrane protein insertion efficiency factor; This family consists of membrane insertion efficiency factor proteins. They contain three conserved cysteine residues. Family members such as YidD may be involved in insertion of integral membrane proteins into the membrane by assisting YidC (membrane protein insertase). Some members of the yidD family have been previously thought to posses alpha-hemolysin activity, however no sufficient evidence was found to corroborate this idea. Secondary structure prediction indicated the presence of three alpha-helices in YidD. None of the three alpha-helices appeared sufficiently hydrophobic to serve as a transmembrane, suggesting a cytoplasmic localization for YidD. However, a closer examination of the alpha-helical wheel projection of the predicted first alpha-helix in YidD suggested an amphipathic structure in its N-terminal region which might be involved in membrane targeting.


Pssm-ID: 460342  Cd Length: 67  Bit Score: 95.14  E-value: 6.52e-27
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 502304146   48 MGLIRLYQLTLSGFIGNSCRHIPTCSEYGYESIARHGLWAGGWMTLFRVGRCGPGGTSGLDQV 110
Cdd:pfam01809   5 IGLIRFYQRFISPLLPPSCRFYPTCSEYAIEAIEKHGALKGGWLALKRILRCHPFHPGGYDPV 67
TIGR00278 TIGR00278
putative membrane protein insertion efficiency factor; This model describes a family, YidD, of ...
 50-112 4.69e-20

putative membrane protein insertion efficiency factor; This model describes a family, YidD, of small, non-essential proteins now suggested to improve YidC-dependent inner membrane protein insertion. A related protein is found in the temperature phage HP1 of Haemophilus influenzae. Annotation of some members of this family as hemolysins appears to represent propagation from an unpublished GenBank submission, L36462, attributed to Aeromonas hydrophila but a close match to E. coli. [Hypothetical proteins, Conserved]


Pssm-ID: 272995  Cd Length: 75  Bit Score: 77.88  E-value: 4.69e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 502304146   50 LIRLYQLTLSGFIGNSCRHIPTCSEYGYESIARHGLWAGGWMTLFRVGRCGPGGTSGLDQVPE 112
Cdd:TIGR00278   4 LIRGYQIFISPFFPPSCRFYPTCSQYAIEALKTHGFLKGGWLTLKRILRCHPLHPGGNDPVPK 66
PRK14386 PRK14386
membrane protein insertion efficiency factor YidD;
50-111 4.32e-19

membrane protein insertion efficiency factor YidD;


Pssm-ID: 172862  Cd Length: 106  Bit Score: 76.22  E-value: 4.32e-19
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 502304146  50 LIRLYQLTLSGFIGNSCRHIPTCSEYGYESIARHGLWAGGWMTLFRVGRCGPGGTSGLDQVP 111
Cdd:PRK14386   8 FIRLYQIAISPLLGPRCRYIPTCSQYALEALQTHGAIKGVWLSSKRICRCHPWGGSGYDPVP 69
PRK14371 PRK14371
hypothetical protein; Provisional
 44-111 3.21e-18

hypothetical protein; Provisional


Pssm-ID: 172847  Cd Length: 81  Bit Score: 73.42  E-value: 3.21e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 502304146  44 RLLGMGLIRLYQLTLSGFIGNSCRHIPTCSEYGYESIARHGLWAGGWMTLFRVGRCGPGGTSGLDQVP 111
Cdd:PRK14371   2 RKLALVPIQFYRYAISPLMASHCRFYPSCSCYAYEAIENHGLLRGGWLSVRRLGRCHPWNPGGYDPVP 69
PRK14389 PRK14389
membrane protein insertion efficiency factor YidD;
44-122 2.56e-17

membrane protein insertion efficiency factor YidD;


Pssm-ID: 184656  Cd Length: 98  Bit Score: 71.50  E-value: 2.56e-17
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 502304146  44 RLLGMGLIRLYQLTLSGFIGNSCRHIPTCSEYGYESIARHGLWAGGWMTLFRVGRCGPGGTSGLDQVPEMLGDSFRWWS 122
Cdd:PRK14389   3 RRLLMALVRGYRLLLSPWLGSACRFEPTCSAYSLQALEQHGAAAGSYLTLRRLARCHPWCDGGHDPVPQEKPRGMRLFS 81
PRK14369 PRK14369
membrane protein insertion efficiency factor YidD;
48-119 2.86e-17

membrane protein insertion efficiency factor YidD;


Pssm-ID: 184650  Cd Length: 119  Bit Score: 72.01  E-value: 2.86e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502304146  48 MGLIRLYQLTLSGFIGNSCRHIPTCSEYGYESIARHGLWAGGWMTLFRVGRCGPGGTSGLDQVP--------EMLGDSFR 119
Cdd:PRK14369   6 LALIKLYQWTISPLLGPVCKYYPSCSHYGYTAIDRHGAIKGTALTAWRILRCNPWSLGGVDHVPprkrprwhEMLRNAWR 85
PRK14390 PRK14390
hypothetical protein; Provisional
 50-112 3.02e-17

hypothetical protein; Provisional


Pssm-ID: 172866  Cd Length: 63  Bit Score: 70.42  E-value: 3.02e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 502304146  50 LIRLYQLTLSGFIGNSCRHIPTCSEYGYESIARHGLWAGGWMTLFRVGRCGPGGTSGLDQVPE 112
Cdd:PRK14390   1 MISFYQKWFSPFFGPRCRFIPSCSSYGYEAITRHGPWKGGWLTLRRLSRCHPLTPCGCDPVPD 63
PRK14370 PRK14370
hypothetical protein; Provisional
 50-111 1.32e-16

hypothetical protein; Provisional


Pssm-ID: 184651  Cd Length: 120  Bit Score: 70.26  E-value: 1.32e-16
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 502304146  50 LIRLYQLTLSGFIGNSCRHIPTCSEYGYESIARHGLWAGGWMTLFRVGRCGPGGTSGLDQVP 111
Cdd:PRK14370  16 FIHFYQRIISPILPARCRYYPTCSNYGKQAIAWHGVGKGSLLLLKRIGRCHPLGGHGIDFVP 77
PRK14381 PRK14381
membrane protein insertion efficiency factor YidD;
48-111 5.72e-16

membrane protein insertion efficiency factor YidD;


Pssm-ID: 172857  Cd Length: 103  Bit Score: 68.35  E-value: 5.72e-16
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 502304146  48 MGLIRLYQLTLSGFIGNSCRHIPTCSEYGYESIARHGLWAGGWMTLFRVGRCGPGGTSGLDQVP 111
Cdd:PRK14381  16 LGLIHLYRWTISPLLGSPCRFFPSCSQYALQALKHHGCIMGLWLTIKRIGKCGPWHPGGIDLVP 79
PRK14387 PRK14387
membrane protein insertion efficiency factor YidD;
49-111 1.05e-15

membrane protein insertion efficiency factor YidD;


Pssm-ID: 184655  Cd Length: 84  Bit Score: 66.89  E-value: 1.05e-15
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 502304146  49 GLIRLYQLTLSGFIGNSCRHIPTCSEYGYESIARHGLWAGGWMTLFRVGRCGPGGTSGLDQVP 111
Cdd:PRK14387  10 LGLRAYKLTLSPLIGRQCRFTPSCSEYTAAALKDHGPLKGSWLGLRRICRCNPFGGSGYDPPP 72
PRK14383 PRK14383
membrane protein insertion efficiency factor YidD;
50-112 2.21e-15

membrane protein insertion efficiency factor YidD;


Pssm-ID: 237698 [Multi-domain]  Cd Length: 84  Bit Score: 66.14  E-value: 2.21e-15
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 502304146  50 LIRLYQLTLSGFI-GNSCRHIPTCSEYGYESIARHGLWAGGWMTLFRVGRCGPGGTSGLDQVPE 112
Cdd:PRK14383  11 AVRWYQRVLSPRKpAPTCRFSPTCSQYAVEAIERHGALKGGWLALWRVLRCNPLVPGGFDPVPE 74
PRK14388 PRK14388
membrane protein insertion efficiency factor YidD;
50-117 3.94e-15

membrane protein insertion efficiency factor YidD;


Pssm-ID: 172864  Cd Length: 82  Bit Score: 65.68  E-value: 3.94e-15
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 502304146  50 LIRLYQLTLSGFIGNSCRHIPTCSEYGYESIARHGLWAGGWMTLFRVGRCGPGGTSGLDQVPEMLGDS 117
Cdd:PRK14388   8 LLRFYQYFISPLLGNNCRFHPTCSEYAKEAISMHGSIKGLWFTFKRIIKCQPFCDGGYDTVPISIKNS 75
PRK14373 PRK14373
hypothetical protein; Provisional
 46-111 2.61e-14

hypothetical protein; Provisional


Pssm-ID: 172849  Cd Length: 73  Bit Score: 63.10  E-value: 2.61e-14
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 502304146  46 LGMGLIRLYQLTLSGFIGNSCRHIPTCSEYGYESIARHGLWAGGWMTLFRVGRCGPGGTSGLDQVP 111
Cdd:PRK14373   8 LLLGLIRFYQYCISPLIPPRCRYTPTCSQYAVEAVKKYGAFKGGRLAIKRIARCHPFGGHGHDPVP 73
PRK14378 PRK14378
membrane protein insertion efficiency factor YidD;
44-111 1.67e-13

membrane protein insertion efficiency factor YidD;


Pssm-ID: 237696  Cd Length: 103  Bit Score: 61.89  E-value: 1.67e-13
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 502304146  44 RLLGMGLIRLYQLTLSGFIGNSCRHIPTCSEYGYESIARHGLWAGGWMTLFRVGRCGPGGTSGLDQVP 111
Cdd:PRK14378  13 RNAAIAVIRLYRRVVSPFYGDVCRYYPSCSAYGLEAVQEHGLIFGGYLAVWRVCRCHPWAEGGIDDVP 80
PRK14372 PRK14372
membrane protein insertion efficiency factor YidD;
48-122 9.47e-13

membrane protein insertion efficiency factor YidD;


Pssm-ID: 172848  Cd Length: 97  Bit Score: 59.95  E-value: 9.47e-13
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 502304146  48 MGLIRLYQLTLSGFIGNSCRHIPTCSEYGYESIARHGLWAGGWMTLFRVGRCGPGGTSGLDQVPEMLGDSFRW-WS 122
Cdd:PRK14372   2 IRGIRWYQQRISANTPPCCKYYPSCSNYAIEAIERFGAFKGGVLAVLRLLRCRPWSRGGIDDVPQRYSLFYRCsWS 77
PRK14382 PRK14382
hypothetical protein; Provisional
 43-108 3.23e-12

hypothetical protein; Provisional


Pssm-ID: 172858  Cd Length: 68  Bit Score: 57.47  E-value: 3.23e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 502304146  43 DRLLgMGLIRLYQLTLSGFIGNSCRHIPTCSEYGYESIARHGLWAGGWMTLFRVGRCGPGGTSGLD 108
Cdd:PRK14382   2 KRLL-IKFIKFYQKFISPLYPSSCRFYPTCSTYAILSIEKYGALKGSLKAFWRILRCNPFSKGGVD 66
PRK14380 PRK14380
hypothetical protein; Provisional
 51-110 1.55e-11

hypothetical protein; Provisional


Pssm-ID: 184654  Cd Length: 81  Bit Score: 56.11  E-value: 1.55e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 502304146  51 IRLYQLTLSGFIGNSCRHIPTCSEYGYESIARHGLWAGGWMTLFRVGRCGPGGTSGLDQV 110
Cdd:PRK14380  16 IKMYQYFISPLITPCCRYYPSCSEYADSAIKHYGVIKGLLMALNRLSRCHPWSKGGYDPL 75
PRK14379 PRK14379
membrane protein insertion efficiency factor YidD;
44-126 2.57e-11

membrane protein insertion efficiency factor YidD;


Pssm-ID: 237697  Cd Length: 95  Bit Score: 55.99  E-value: 2.57e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502304146  44 RLLGMGLIRLYQLTLSGFIGNSCRHIPTCSEYGYESIARHGLWAGGWMTLFRVGRCGPGGTSGLDQVPEMLgDSFRWWSP 123
Cdd:PRK14379   2 RKILIFLVRVYQKFISPILPPSCRYYPTCSSYMIDALKKHGPILGLIMGLARILRCNPFIRGGVDPVPDYF-TLRRNPHP 80


                 ...
gi 502304146 124 WRY 126
Cdd:PRK14379  81 ERY 83
PRK14377 PRK14377
membrane protein insertion efficiency factor YidD;
44-111 7.32e-11

membrane protein insertion efficiency factor YidD;


Pssm-ID: 172853  Cd Length: 104  Bit Score: 55.16  E-value: 7.32e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 502304146  44 RLLGMGLIRLYQLTLSGFIGNSCRHIPTCSEYGYESIARHGLWAGGWMTLFRVGRCGPGGTSGLDQVP 111
Cdd:PRK14377   7 SSFFRGLVHLYRWAISPFLGAPCRFFPTCSEYALVALKKHPLRKSLFLIAKRLLKCGPWCIGGIDLVP 74
PRK14375 PRK14375
membrane protein insertion efficiency factor YidD;
50-101 3.43e-09

membrane protein insertion efficiency factor YidD;


Pssm-ID: 172851  Cd Length: 70  Bit Score: 49.99  E-value: 3.43e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 502304146  50 LIRLYQLTLSGFIGNSCRHIPTCSEYGYESIARHGLWAGGWMTLFRVGRCGP 101
Cdd:PRK14375   2 LINLYRYCISPFIPARCRYYPTCSEYALEALKTHGILKGLYLTTRRLLRCHP 53
PRK14391 PRK14391
membrane protein insertion efficiency factor YidD;
50-111 4.00e-08

membrane protein insertion efficiency factor YidD;


Pssm-ID: 172867  Cd Length: 84  Bit Score: 47.33  E-value: 4.00e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 502304146  50 LIRLYQLTLSGFIGNSCRHIPTCSEYGYESIARHGLWAGGWMTLFRVGRCGPGGTSGLDQVP 111
Cdd:PRK14391   8 LIQLYKKIISPLLPPACRFTPTCSEYAAQAFQECGFFQAIQLSAWRILRCNPLSQGFDDPLP 69
PRK14376 PRK14376
membrane protein insertion efficiency factor YidD;
49-111 5.54e-07

membrane protein insertion efficiency factor YidD;


Pssm-ID: 237695  Cd Length: 176  Bit Score: 46.10  E-value: 5.54e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 502304146  49 GLIRLYQLTLSGFIGNSCRHIPTCSEYGYESIARHGLWAGGWMTLFRVGRCGPGGTSGLDQVP 111
Cdd:PRK14376  47 GLVRLYRAGWSGRNAGCCRFEPSCSAYALTAVRRHGGVRGGLLAVRRLLRCQPLSAGGYDPVP 109
PRK14384 PRK14384
hypothetical protein; Provisional
 64-112 7.58e-07

hypothetical protein; Provisional


Pssm-ID: 172860  Cd Length: 56  Bit Score: 43.51  E-value: 7.58e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 502304146  64 NSCRHIPTCSEYGYESIARHGLWAGGWMTLFRVGRCGPGGTSGLDQVPE 112
Cdd:PRK14384   2 SSCRFYPSCSCYAETALKRFGVIKGSGLTVWRLLRCHPFHPGGVDFVPE 50
PRK14385 PRK14385
membrane protein insertion efficiency factor YidD;
50-111 1.46e-05

membrane protein insertion efficiency factor YidD;


Pssm-ID: 172861  Cd Length: 96  Bit Score: 40.96  E-value: 1.46e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 502304146  50 LIRLYQLTLSGFIGNSCRHIPTCSEYGYESIARHGLWAGGWMTLFRVGRCGPGGTSGLDQVP 111
Cdd:PRK14385  17 LIKIYQNTLSKIVGFQCIYKPSCSNYALECLKKYNILTALILITLRIIRCNALFKGGNESLP 78
PRK14374 PRK14374
membrane protein insertion efficiency factor YidD;
32-107 3.60e-03

membrane protein insertion efficiency factor YidD;


Pssm-ID: 237694  Cd Length: 118  Bit Score: 35.05  E-value: 3.60e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 502304146  32 RNYTGPFRKSpdrlLGMGLIRLYQLTLSGFIGNSCRHIPTCSEYGYESIARHGLWAGGWMTLFRVGRCGPGGTSGL 107
Cdd:PRK14374   2 RNNKTPFLSA----IFTASIRGYQRFFSAFTFSSCRFYPTCSNYALWLLCFENPLSAMGKIAIRILSCNPFCSGGI 73
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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