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Conserved domains on  [gi|502304728|ref|WP_012757677|]
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ABC-type transport auxiliary lipoprotein family protein [Rhizobium leguminosarum]

Protein Classification

PqiC family protein; membrane integrity-associated transporter subunit PqiC; membrane integrity-associated transporter subunit PqiC( domain architecture ID 10007093)

PqiC family protein similar to Escherichia coli membrane integrity-associated transporter subunit PqiC, which is a component of a transport pathway that contributes to membrane integrity; membrane integrity-associated transporter subunit PqiC is a component of a transport pathway that contributes to membrane integrity; membrane integrity-associated transporter subunit PqiC is a component of a transport pathway that contributes to membrane integrity

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG3218 COG3218
ABC-type uncharacterized transport system, auxiliary component [General function prediction ...
 17-203 7.97e-59

ABC-type uncharacterized transport system, auxiliary component [General function prediction only];


:

Pssm-ID: 442451  Cd Length: 202  Bit Score: 183.27  E-value: 7.97e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502304728  17 VIALPLTALILSGCG---TAAKNDTYDLPAAVD-GSGPAAKSRQILIASPTALRSLDSEQIVIRVSPSEIQYLSKAQWGD 92
Cdd:COG3218    9 LLLLLLLALLLAGCSslpAPPPPTLYDLTPPLPaAAAAGPLPAQLLVAEPTAPGALDSDRIVVRPDPGQLQYYAGARWAD 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502304728  93 KLPRIVQSKLVEAFENSGKLGGVGMPGQGLAIDYQIVTDIRSFEIDA-SRGNQAVVEISAKILNDRNGSVRAQKVFRAMA 171
Cdd:COG3218   89 PPPRLLQDLLVEALEASGRFRAVGRPGSGLAADYRLEGELRDFEQDFdGGAPRAVVELRARLVDDRDGRVVASRRFEARV 168

                        170       180       190
                 ....*....|....*....|....*....|...
gi 502304728 172 PAGG-DNDGFVKGLDRAFSTVASEIVTWTLRSI 203
Cdd:COG3218  169 PAASaDAAGVVAALNQALDQLLAEIVAWLAAQL 201
 
Name Accession Description Interval E-value
COG3218 COG3218
ABC-type uncharacterized transport system, auxiliary component [General function prediction ...
 17-203 7.97e-59

ABC-type uncharacterized transport system, auxiliary component [General function prediction only];


Pssm-ID: 442451  Cd Length: 202  Bit Score: 183.27  E-value: 7.97e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502304728  17 VIALPLTALILSGCG---TAAKNDTYDLPAAVD-GSGPAAKSRQILIASPTALRSLDSEQIVIRVSPSEIQYLSKAQWGD 92
Cdd:COG3218    9 LLLLLLLALLLAGCSslpAPPPPTLYDLTPPLPaAAAAGPLPAQLLVAEPTAPGALDSDRIVVRPDPGQLQYYAGARWAD 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502304728  93 KLPRIVQSKLVEAFENSGKLGGVGMPGQGLAIDYQIVTDIRSFEIDA-SRGNQAVVEISAKILNDRNGSVRAQKVFRAMA 171
Cdd:COG3218   89 PPPRLLQDLLVEALEASGRFRAVGRPGSGLAADYRLEGELRDFEQDFdGGAPRAVVELRARLVDDRDGRVVASRRFEARV 168

                        170       180       190
                 ....*....|....*....|....*....|...
gi 502304728 172 PAGG-DNDGFVKGLDRAFSTVASEIVTWTLRSI 203
Cdd:COG3218  169 PAASaDAAGVVAALNQALDQLLAEIVAWLAAQL 201
ABC_trans_aux pfam03886
ABC-type transport auxiliary lipoprotein component; ABC_trans_aux is a family of bacterial ...
 42-195 7.06e-28

ABC-type transport auxiliary lipoprotein component; ABC_trans_aux is a family of bacterial proteins that act as auxiliarires to the ABC-transporter in the gamma-hexachlorocyclohexane uptake permease system in Sphingobium japonicum. Gamma-hexachlorocyclohexane, or Lindane, can be used as the sole source of carbon in S.japonicum in aerobic conditions. Lindane is an insecticide.


Pssm-ID: 427568  Cd Length: 155  Bit Score: 102.78  E-value: 7.06e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502304728   42 PAAVDGSGPAAKSRQILIASPTALRSLDSEQIVIRVSPSEIQYLSKAQWGDKLPRIVQSKLVEAFENSGKLGGVGMPG-- 119
Cdd:pfam03886   1 PAPAATPAASSPQPQLEVGPVSLPDYLDRPQIVVRTGDGQLQLAENARWAEPLDDQITRALAADLSRRLPSRRVAAFPwp 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 502304728  120 QGLAIDYQIVTDIRSFEIDAsrGNQAVVEISAKILNDRNGSVRAQKVFRAMAP-AGGDNDGFVKGLDRAFSTVASEI 195
Cdd:pfam03886  81 LGGTPDYRLQVDVRRFDGRP--GGNAVLEARWTLLDAGGGRVLTSRSFRISEPvAGDGYAALVAALSQALAQLAAQI 155
 
Name Accession Description Interval E-value
COG3218 COG3218
ABC-type uncharacterized transport system, auxiliary component [General function prediction ...
 17-203 7.97e-59

ABC-type uncharacterized transport system, auxiliary component [General function prediction only];


Pssm-ID: 442451  Cd Length: 202  Bit Score: 183.27  E-value: 7.97e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502304728  17 VIALPLTALILSGCG---TAAKNDTYDLPAAVD-GSGPAAKSRQILIASPTALRSLDSEQIVIRVSPSEIQYLSKAQWGD 92
Cdd:COG3218    9 LLLLLLLALLLAGCSslpAPPPPTLYDLTPPLPaAAAAGPLPAQLLVAEPTAPGALDSDRIVVRPDPGQLQYYAGARWAD 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502304728  93 KLPRIVQSKLVEAFENSGKLGGVGMPGQGLAIDYQIVTDIRSFEIDA-SRGNQAVVEISAKILNDRNGSVRAQKVFRAMA 171
Cdd:COG3218   89 PPPRLLQDLLVEALEASGRFRAVGRPGSGLAADYRLEGELRDFEQDFdGGAPRAVVELRARLVDDRDGRVVASRRFEARV 168

                        170       180       190
                 ....*....|....*....|....*....|...
gi 502304728 172 PAGG-DNDGFVKGLDRAFSTVASEIVTWTLRSI 203
Cdd:COG3218  169 PAASaDAAGVVAALNQALDQLLAEIVAWLAAQL 201
ABC_trans_aux pfam03886
ABC-type transport auxiliary lipoprotein component; ABC_trans_aux is a family of bacterial ...
 42-195 7.06e-28

ABC-type transport auxiliary lipoprotein component; ABC_trans_aux is a family of bacterial proteins that act as auxiliarires to the ABC-transporter in the gamma-hexachlorocyclohexane uptake permease system in Sphingobium japonicum. Gamma-hexachlorocyclohexane, or Lindane, can be used as the sole source of carbon in S.japonicum in aerobic conditions. Lindane is an insecticide.


Pssm-ID: 427568  Cd Length: 155  Bit Score: 102.78  E-value: 7.06e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502304728   42 PAAVDGSGPAAKSRQILIASPTALRSLDSEQIVIRVSPSEIQYLSKAQWGDKLPRIVQSKLVEAFENSGKLGGVGMPG-- 119
Cdd:pfam03886   1 PAPAATPAASSPQPQLEVGPVSLPDYLDRPQIVVRTGDGQLQLAENARWAEPLDDQITRALAADLSRRLPSRRVAAFPwp 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 502304728  120 QGLAIDYQIVTDIRSFEIDAsrGNQAVVEISAKILNDRNGSVRAQKVFRAMAP-AGGDNDGFVKGLDRAFSTVASEI 195
Cdd:pfam03886  81 LGGTPDYRLQVDVRRFDGRP--GGNAVLEARWTLLDAGGGRVLTSRSFRISEPvAGDGYAALVAALSQALAQLAAQI 155
PqiC COG3009
Intermembrane transporter PqiABC lipoprotein subunit PqiC [Cell wall/membrane/envelope ...
 13-198 4.13e-15

Intermembrane transporter PqiABC lipoprotein subunit PqiC [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442246 [Multi-domain]  Cd Length: 198  Bit Score: 70.40  E-value: 4.13e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502304728  13 IRGTVIALPLTALILSGCGTAAKNDTYDLPAAV--DGSGPAAKSRQILIASPTALRSLDSEQIVIRVSPSEIQYLSKAQW 90
Cdd:COG3009    3 RPLRLLLLLLLALLLAACASSPPTRYYTLPPPAapAAAAAAAAAPVIEVGPVSLPDYLDRPQIVYRTGDGRLVIAENHRW 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502304728  91 GDKLPRIVQSKLVEAFenSGKLGGVGMPGQGLAI----DYQIVTDIRSFeiDASRGNQAVVEISAKILNDRNGSVRAQKV 166
Cdd:COG3009   83 AEPLSDQLTRALAANL--AARLPGARVAAQPWPLagrpDYRLRVDVTRF--DGRPDGQAVLSAQWSLRRGGGGGPLLSRR 158

                        170       180       190
                 ....*....|....*....|....*....|...
gi 502304728 167 FRAMAP-AGGDNDGFVKGLDRAFSTVASEIVTW 198
Cdd:COG3009  159 FSIEEPlAGDGYDALVAALSQALAQLADQIAAA 191
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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