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Conserved domains on  [gi|502307955|ref|WP_012758747|]
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membrane protein [Rhizobium leguminosarum]

Protein Classification

carboxymuconolactone decarboxylase family protein( domain architecture ID 1562442)

carboxymuconolactone decarboxylase family protein similar to Marinomonas mediterranea debrominase Bmp8 that catalyzes the reductive debromination of the coral settlement cue and the potential human toxin 2,3,4,5-tetrabromopyrrole as part of the biosynthesis of the antibiotic pentabromopseudilin

CATH:  1.20.1290.10
Gene Ontology:  GO:0051920
SCOP:  3001907

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YciW super family cl39132
Alkylhydroperoxidase family enzyme, contains CxxC motif [Inorganic ion transport and ...
 111-171 3.48e-05

Alkylhydroperoxidase family enzyme, contains CxxC motif [Inorganic ion transport and metabolism];


The actual alignment was detected with superfamily member COG2128:

Pssm-ID: 441731 [Multi-domain]  Cd Length: 142  Bit Score: 41.79  E-value: 3.48e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 502307955 111 AFGKAIVTDSNAVPAEIWAKLKQRYETKVLVDLVAFAGIMLATAVFNNVVEVDFDPELEAF 171
Cdd:COG2128   82 AFAEALTRTPGGVSDADVAALRAGFSDAEIVELVLAIALFNMSNRLNNALGTPPDPPFAAL 142
 
Name Accession Description Interval E-value
YciW COG2128
Alkylhydroperoxidase family enzyme, contains CxxC motif [Inorganic ion transport and ...
 111-171 3.48e-05

Alkylhydroperoxidase family enzyme, contains CxxC motif [Inorganic ion transport and metabolism];


Pssm-ID: 441731 [Multi-domain]  Cd Length: 142  Bit Score: 41.79  E-value: 3.48e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 502307955 111 AFGKAIVTDSNAVPAEIWAKLKQRYETKVLVDLVAFAGIMLATAVFNNVVEVDFDPELEAF 171
Cdd:COG2128   82 AFAEALTRTPGGVSDADVAALRAGFSDAEIVELVLAIALFNMSNRLNNALGTPPDPPFAAL 142
 
Name Accession Description Interval E-value
YciW COG2128
Alkylhydroperoxidase family enzyme, contains CxxC motif [Inorganic ion transport and ...
 111-171 3.48e-05

Alkylhydroperoxidase family enzyme, contains CxxC motif [Inorganic ion transport and metabolism];


Pssm-ID: 441731 [Multi-domain]  Cd Length: 142  Bit Score: 41.79  E-value: 3.48e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 502307955 111 AFGKAIVTDSNAVPAEIWAKLKQRYETKVLVDLVAFAGIMLATAVFNNVVEVDFDPELEAF 171
Cdd:COG2128   82 AFAEALTRTPGGVSDADVAALRAGFSDAEIVELVLAIALFNMSNRLNNALGTPPDPPFAAL 142
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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