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Conserved domains on  [gi|502350790|ref|WP_012769473|]
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putrescine export ABC transporter permease SapB [Dickeya chrysanthemi]

Protein Classification

peptide ABC transporter permease SapB( domain architecture ID 10794134)

peptide ABC transporter permease SapB is part of a putrescine export transport system; does not play a role in resistance to antimicrobial peptides

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK15110 PRK15110
peptide ABC transporter permease SapB;
22-321 0e+00

peptide ABC transporter permease SapB;


:

Pssm-ID: 185065 [Multi-domain]  Cd Length: 321  Bit Score: 550.06  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790  22 IGFSLLYYTPHAPLNGAALLDAYHFYFGSLLQGDFGVSSTNGQPISEQLREVLPATVELCLLAFSLSLLVGIPLGITTGV 101
Cdd:PRK15110  22 VGFSLSYFTPHAPLQGASLWDAWVFWFNGLLHWDFGVSSINGQPISEQLKEVFPATMELCILAFGFALLVGIPVGIIAGV 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790 102 LQHKAADRIISALALLGFSLPVFWLALLMTLFFSLHLGWLPVSGRFDLLYPVPPVTGFALIDAWLAHSPYREEMIASAIQ 181
Cdd:PRK15110 102 TRHKWQDNLISALALLGFSIPVFWLALLLTLFFSLTLGWLPVSGRFDLLYEVKPVTGFALIDAWLSDSPWRDEMIMSAIR 181

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790 182 HMILPVLVLSVGPTTEVVRLMRISTTDVGTQNYIKAAIIRGLPRATVIRRHLLHNALPPIIPQLGLQFSTMLTLEMITEV 261
Cdd:PRK15110 182 HMILPVITLAVAPTTEVIRLMRISTIEVYDQNYVKAAATRGLSRFTILRRHVLHNALPPVIPRLGLQFSTMLTLAMITEM 261

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790 262 VFNWPGIGRWLVNAIRQQDFAAISAGVMVVGALVITINVLSDIWGAMANPLKHKEWYALR 321
Cdd:PRK15110 262 VFSWPGLGRWLINAIRQQDYAAISAGVMVVGSLVIIVNVLSDILGAMANPLKHKEWYALR 321
 
Name Accession Description Interval E-value
PRK15110 PRK15110
peptide ABC transporter permease SapB;
22-321 0e+00

peptide ABC transporter permease SapB;


Pssm-ID: 185065 [Multi-domain]  Cd Length: 321  Bit Score: 550.06  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790  22 IGFSLLYYTPHAPLNGAALLDAYHFYFGSLLQGDFGVSSTNGQPISEQLREVLPATVELCLLAFSLSLLVGIPLGITTGV 101
Cdd:PRK15110  22 VGFSLSYFTPHAPLQGASLWDAWVFWFNGLLHWDFGVSSINGQPISEQLKEVFPATMELCILAFGFALLVGIPVGIIAGV 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790 102 LQHKAADRIISALALLGFSLPVFWLALLMTLFFSLHLGWLPVSGRFDLLYPVPPVTGFALIDAWLAHSPYREEMIASAIQ 181
Cdd:PRK15110 102 TRHKWQDNLISALALLGFSIPVFWLALLLTLFFSLTLGWLPVSGRFDLLYEVKPVTGFALIDAWLSDSPWRDEMIMSAIR 181

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790 182 HMILPVLVLSVGPTTEVVRLMRISTTDVGTQNYIKAAIIRGLPRATVIRRHLLHNALPPIIPQLGLQFSTMLTLEMITEV 261
Cdd:PRK15110 182 HMILPVITLAVAPTTEVIRLMRISTIEVYDQNYVKAAATRGLSRFTILRRHVLHNALPPVIPRLGLQFSTMLTLAMITEM 261

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790 262 VFNWPGIGRWLVNAIRQQDFAAISAGVMVVGALVITINVLSDIWGAMANPLKHKEWYALR 321
Cdd:PRK15110 262 VFSWPGLGRWLINAIRQQDYAAISAGVMVVGSLVIIVNVLSDILGAMANPLKHKEWYALR 321
SapB COG4168
ABC-type antimicrobial peptide export system, permease component SapB [Defense mechanisms];
22-321 0e+00

ABC-type antimicrobial peptide export system, permease component SapB [Defense mechanisms];


Pssm-ID: 443329 [Multi-domain]  Cd Length: 321  Bit Score: 503.60  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790  22 IGFSLLYYTPHAPLNGAALLDAYHFYFGSLLQGDFGVSSTNGQPISEQLREVLPATVELCLLAFSLSLLVGIPLGITTGV 101
Cdd:COG4168   22 ISFSLLYRDPLNPLSDASLFSGYLFYLQNLLQGDFGISSINGEPILEQLLTVFPATLELCFLAFLLALLIGIPLGILAGI 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790 102 LQHKAADRIISALALLGFSLPVFWLALLMTLFFSLHLGWLPVSGRFDLLYPVPPVTGFALIDAWLAHSPYREEMIASAIQ 181
Cdd:COG4168  102 YRGKWLDKLISSLSLLGFSIPVFWLALLLILFFSLNLGWLPVSGRYNLLYEIPPVTGFALIDAWLSDSPYRLKAIQSALQ 181

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790 182 HMILPVLVLSVGPTTEVVRLMRISTTDVGTQNYIKAAIIRGLPRATVIRRHLLHNALPPIIPQLGLQFSTMLTLEMITEV 261
Cdd:COG4168  182 HLILPTLVLAVAPTTEVIRLTRQSTEEVMNQNYIKAAATRGLSRFTIIRRHVLRNALPPIIPQLGLQFSTMLTLAMITEV 261

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790 262 VFNWPGIGRWLVNAIRQQDFAAISAGVMVVGALVITINVLSDIWGAMANPLKHKEWYALR 321
Cdd:COG4168  262 VFSWPGIGRWLINAIRQQDYAAISAGVIVIGTFVIIVNILSDILGALLNPLKRKEWYALR 321
nickel_nikB TIGR02789
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of ...
 47-311 9.34e-48

nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 131836 [Multi-domain]  Cd Length: 314  Bit Score: 162.62  E-value: 9.34e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790   47 YFGSL---LQGDFGVSSTNGQPISEQLREVLPATVELCLLAFSLSLLVGIPLGITTGVLQHKAADRIISALALLGFSLPV 123
Cdd:TIGR02789  68 YFHWLwnaLHLDFGISYISDRPVLDEIARSLPATLELAGFALVIVVLVSVPLGILAARYRDRLPDHAVRFIIFLGVSIPN 147

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790  124 FWLALLMTLFFSLHLGWLPVSGrfdllypvppvtgfalidawlahspyreemiASAIQHMILPVLVLSVGPTTEVVRLMR 203
Cdd:TIGR02789 148 FWLAFLLVWGFSVYLNLLPTNG-------------------------------AGTWQHLVLPAVTLALMSVSIYARLLR 196

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790  204 ISTTDVGTQNYIKAAIIRGLPRATVIRRHLLHNALPPIIPQLGLQFSTMLTLEMITEVVFNWPGIGRWLVNAIRQQDFAA 283
Cdd:TIGR02789 197 ASMLDNMQERYVTYARVRGIKERWVIRRHILRNAILPMITALGMHIGELLGGTFVIENIFSWPGVGRYAISAIFNRDYPV 276

                         250       260
                  ....*....|....*....|....*...
gi 502350790  284 ISAGVMVVGALVITINVLSDIWGAMANP 311
Cdd:TIGR02789 277 IQCYTLLMGLLFVFCNLIVDLFQALLDP 304
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 92-311 1.31e-19

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 84.66  E-value: 1.31e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790   92 GIPLGITTGVLQHKAADRIISALALLGFSLPVFWLALLMTLFFslhlgwlpvsgrfdllypvppvtgfalidawlahspy 171
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIA------------------------------------- 43

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790  172 reemIASAIQHMILPVLVLSVGPTTEVVRLMRISTTDVGTQNYIKAAIIRGLPRATVIRRHLLHNALPPIIPQLGLQFST 251
Cdd:pfam00528  44 ----ILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGG 119

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790  252 MLTLEMITEVVFNWPGIGRWLVNAIRQQDFAAISAGVMVVGALVITINVLSDIWGAMANP 311
Cdd:pfam00528 120 ALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDP 179
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 74-296 5.14e-13

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 66.53  E-value: 5.14e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790  74 LPATVELCLLAFSLSLLVGIPLGITTGVLQHKAaDRIISALALLGFSLPVFWLALLMTLFFSLHLGWlpvsgrfdllypv 153
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKL-DRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGW------------- 66

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790 154 ppvtgfalidawlahspyreemiaSAIQHMILPVLVLSVGPTTEVVRLMRISTTDVGTQNYIKAAIIRGLPRATVIRRHL 233
Cdd:cd06261   67 ------------------------GILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRII 122

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 502350790 234 LHNALPPIIPQLGLQFSTMLTLEMITEVVFN----WPGIGRWLVNAIRQQDFAAISAGVMVVGALVI 296
Cdd:cd06261  123 LPLALPPILTGLVLAFARALGEFALVSFLGGgeapGPGTGLLLIFAILFPGDLGVAAAVALILLLLS 189
 
Name Accession Description Interval E-value
PRK15110 PRK15110
peptide ABC transporter permease SapB;
22-321 0e+00

peptide ABC transporter permease SapB;


Pssm-ID: 185065 [Multi-domain]  Cd Length: 321  Bit Score: 550.06  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790  22 IGFSLLYYTPHAPLNGAALLDAYHFYFGSLLQGDFGVSSTNGQPISEQLREVLPATVELCLLAFSLSLLVGIPLGITTGV 101
Cdd:PRK15110  22 VGFSLSYFTPHAPLQGASLWDAWVFWFNGLLHWDFGVSSINGQPISEQLKEVFPATMELCILAFGFALLVGIPVGIIAGV 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790 102 LQHKAADRIISALALLGFSLPVFWLALLMTLFFSLHLGWLPVSGRFDLLYPVPPVTGFALIDAWLAHSPYREEMIASAIQ 181
Cdd:PRK15110 102 TRHKWQDNLISALALLGFSIPVFWLALLLTLFFSLTLGWLPVSGRFDLLYEVKPVTGFALIDAWLSDSPWRDEMIMSAIR 181

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790 182 HMILPVLVLSVGPTTEVVRLMRISTTDVGTQNYIKAAIIRGLPRATVIRRHLLHNALPPIIPQLGLQFSTMLTLEMITEV 261
Cdd:PRK15110 182 HMILPVITLAVAPTTEVIRLMRISTIEVYDQNYVKAAATRGLSRFTILRRHVLHNALPPVIPRLGLQFSTMLTLAMITEM 261

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790 262 VFNWPGIGRWLVNAIRQQDFAAISAGVMVVGALVITINVLSDIWGAMANPLKHKEWYALR 321
Cdd:PRK15110 262 VFSWPGLGRWLINAIRQQDYAAISAGVMVVGSLVIIVNVLSDILGAMANPLKHKEWYALR 321
SapB COG4168
ABC-type antimicrobial peptide export system, permease component SapB [Defense mechanisms];
22-321 0e+00

ABC-type antimicrobial peptide export system, permease component SapB [Defense mechanisms];


Pssm-ID: 443329 [Multi-domain]  Cd Length: 321  Bit Score: 503.60  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790  22 IGFSLLYYTPHAPLNGAALLDAYHFYFGSLLQGDFGVSSTNGQPISEQLREVLPATVELCLLAFSLSLLVGIPLGITTGV 101
Cdd:COG4168   22 ISFSLLYRDPLNPLSDASLFSGYLFYLQNLLQGDFGISSINGEPILEQLLTVFPATLELCFLAFLLALLIGIPLGILAGI 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790 102 LQHKAADRIISALALLGFSLPVFWLALLMTLFFSLHLGWLPVSGRFDLLYPVPPVTGFALIDAWLAHSPYREEMIASAIQ 181
Cdd:COG4168  102 YRGKWLDKLISSLSLLGFSIPVFWLALLLILFFSLNLGWLPVSGRYNLLYEIPPVTGFALIDAWLSDSPYRLKAIQSALQ 181

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790 182 HMILPVLVLSVGPTTEVVRLMRISTTDVGTQNYIKAAIIRGLPRATVIRRHLLHNALPPIIPQLGLQFSTMLTLEMITEV 261
Cdd:COG4168  182 HLILPTLVLAVAPTTEVIRLTRQSTEEVMNQNYIKAAATRGLSRFTIIRRHVLRNALPPIIPQLGLQFSTMLTLAMITEV 261

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790 262 VFNWPGIGRWLVNAIRQQDFAAISAGVMVVGALVITINVLSDIWGAMANPLKHKEWYALR 321
Cdd:COG4168  262 VFSWPGIGRWLINAIRQQDYAAISAGVIVIGTFVIIVNILSDILGALLNPLKRKEWYALR 321
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 47-311 1.71e-79

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 244.21  E-value: 1.71e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790  47 YFGSLLQGDFGVSSTNGQPISEQLREVLPATVELCLLAFSLSLLVGIPLGITTGVLQHKAADRIISALALLGFSLPVFWL 126
Cdd:COG0601   68 WLGGLLRGDLGTSFVYGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWL 147

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790 127 ALLMTLFFSLHLGWLPVSGRFDLLypvppvtgfalidawlahspyreEMIASAIQHMILPVLVLSVGPTTEVVRLMRIST 206
Cdd:COG0601  148 GLLLILLFAVKLGWLPVSGRVSPW-----------------------EDFLDALRHLILPALTLALGSLAGIARLTRSSM 204

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790 207 TDVGTQNYIKAAIIRGLPRATVIRRHLLHNALPPIIPQLGLQFSTMLTLEMITEVVFNWPGIGRWLVNAIRQQDFAAISA 286
Cdd:COG0601  205 LEVLGQDYVRTARAKGLSERRVLLRHALRNALIPVVTVLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQG 284

                        250       260
                 ....*....|....*....|....*
gi 502350790 287 GVMVVGALVITINVLSDIWGAMANP 311
Cdd:COG0601  285 IVLLIAVLVVLVNLLVDLLYALLDP 309
PRK10914 PRK10914
dipeptide ABC transporter permease DppB;
40-316 2.60e-51

dipeptide ABC transporter permease DppB;


Pssm-ID: 182834 [Multi-domain]  Cd Length: 339  Bit Score: 172.69  E-value: 2.60e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790  40 LLDAYHFYFGSLLQGDFGVSSTNGQPISEQLREVLPATVELCLLAFSLSLLVGIPLGITTGVLQHKAADRIISALALLGF 119
Cdd:PRK10914  62 MWQQYLHYIWGVMHGDLGISLKSRIPVWDEFVPRFKATLELGVCAMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGY 141

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790 120 SLPVFWLALLMTLFFSLHLGWLPVSGRFD---LLYPVPPVTGFALIDAWLAHSPYReemIASAIQHMILPVLVLSVGPTT 196
Cdd:PRK10914 142 SMPIFWWGMMLIMLVSVHWNLTPVSGRVSdmvFLDDSNPLTGFMLIDTAIWGEDGN---FIDAVAHMILPAIVLGTIPLA 218

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790 197 EVVRLMRISTTDVGTQNYIKAAIIRGLPRATVIRRHLLHNALPPIIPQLGLQFSTMLTLEMITEVVFNWPGIGRWLVNAI 276
Cdd:PRK10914 219 VIVRMTRSSMLEVLGEDYIRTARAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDAL 298

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 502350790 277 RQQDFAAISAGVMVVGALVITINVLSDIWGAMANP-LKHKE 316
Cdd:PRK10914 299 QRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPrIRHKK 339
nickel_nikB TIGR02789
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of ...
 47-311 9.34e-48

nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 131836 [Multi-domain]  Cd Length: 314  Bit Score: 162.62  E-value: 9.34e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790   47 YFGSL---LQGDFGVSSTNGQPISEQLREVLPATVELCLLAFSLSLLVGIPLGITTGVLQHKAADRIISALALLGFSLPV 123
Cdd:TIGR02789  68 YFHWLwnaLHLDFGISYISDRPVLDEIARSLPATLELAGFALVIVVLVSVPLGILAARYRDRLPDHAVRFIIFLGVSIPN 147

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790  124 FWLALLMTLFFSLHLGWLPVSGrfdllypvppvtgfalidawlahspyreemiASAIQHMILPVLVLSVGPTTEVVRLMR 203
Cdd:TIGR02789 148 FWLAFLLVWGFSVYLNLLPTNG-------------------------------AGTWQHLVLPAVTLALMSVSIYARLLR 196

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790  204 ISTTDVGTQNYIKAAIIRGLPRATVIRRHLLHNALPPIIPQLGLQFSTMLTLEMITEVVFNWPGIGRWLVNAIRQQDFAA 283
Cdd:TIGR02789 197 ASMLDNMQERYVTYARVRGIKERWVIRRHILRNAILPMITALGMHIGELLGGTFVIENIFSWPGVGRYAISAIFNRDYPV 276

                         250       260
                  ....*....|....*....|....*...
gi 502350790  284 ISAGVMVVGALVITINVLSDIWGAMANP 311
Cdd:TIGR02789 277 IQCYTLLMGLLFVFCNLIVDLFQALLDP 304
PRK10352 PRK10352
nickel transporter permease NikB; Provisional
 44-311 1.09e-43

nickel transporter permease NikB; Provisional


Pssm-ID: 182400 [Multi-domain]  Cd Length: 314  Bit Score: 152.16  E-value: 1.09e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790  44 YHFYFGSLLQGDFGVSSTNGQPISEQLREVLPATVELCLLAFSLSLLVGIPLGITTGVLQHKAADRIISALALLGFSLPV 123
Cdd:PRK10352  68 YGTWLWKALHLDFGISFATQRPVLDDLLNFLPATLELAGAALVLILLTSVPLGIWAARHRDRLPDFAVRFIAFLGVSMPN 147

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790 124 FWLALLMTLFFSLHLGWLPVSGRFDLlypvppvtgfalidawlahspyreemiasaiQHMILPVLVLSVGPTTEVVRLMR 203
Cdd:PRK10352 148 FWLAFLLVMAFSVYLQWLPAMGYGGW-------------------------------QHIILPAVSIAFMSLAINARLLR 196

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790 204 ISTTDVGTQNYIKAAIIRGLPRATVIRRHLLHNALPPIIPQLGLQFSTMLTLEMITEVVFNWPGIGRWLVNAIRQQDFAA 283
Cdd:PRK10352 197 ASMLEVAGQRHVTWARLRGLSERQVERRHILRNASLPMITAVGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPV 276

                        250       260
                 ....*....|....*....|....*...
gi 502350790 284 ISAGVMVVGALVITINVLSDIWGAMANP 311
Cdd:PRK10352 277 IQCFTLMMVVVFVVCNLIVDLLNAALDP 304
PRK15081 PRK15081
glutathione ABC transporter permease GsiC; Provisional
 47-311 2.14e-41

glutathione ABC transporter permease GsiC; Provisional


Pssm-ID: 185039 [Multi-domain]  Cd Length: 306  Bit Score: 146.01  E-value: 2.14e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790  47 YFGSLLQGDFGVSSTNGQPISEQLREVLPATVELCLLAFSLSLLVGIPLGITTGVLQHKAADRIISALALLGFSLPVFWL 126
Cdd:PRK15081  68 YISNALQGDFGTSMVSRRPVSEEIASRFMPTLWLTITSMVWAVIFGMAIGIASAVWRNRWPDRLGMTLAVSGISFPAFAL 147

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790 127 ALLMTLFFSLHLGWLPVSGRfdllypvppvtgfaliDAWlahspyreemiasaiQHMILPVLVLSVGPTTEVVRLMRIST 206
Cdd:PRK15081 148 GMLLMQVFSVELGWLPTVGA----------------DSW---------------QHYILPSLTLGAAVAAVMARFTRASF 196

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790 207 TDVGTQNYIKAAIIRGLPRATVIRRHLLHNALPPIIPQLGLQFSTMLTLEMITEVVFNWPGIGRWLVNAIRQQDFAAISA 286
Cdd:PRK15081 197 VEVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQA 276

                        250       260
                 ....*....|....*....|....*
gi 502350790 287 GVMVVGALVITINVLSDIWGAMANP 311
Cdd:PRK15081 277 EVLLFSLEFILINLVVDVLYAAINP 301
oppB PRK09471
oligopeptide ABC transporter permease OppB;
44-311 4.61e-32

oligopeptide ABC transporter permease OppB;


Pssm-ID: 181886 [Multi-domain]  Cd Length: 306  Bit Score: 121.33  E-value: 4.61e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790  44 YHFYFGSLLQGDFGVS-STNGQPISEQLREVLPATVELCLLAFSLSLLVGIPLGITTGVLQHKAADRIISALALLGFSLP 122
Cdd:PRK09471  63 YFSYLKQLAHGDFGPSfKYKDYSVNDLVASSFPVSAKLGAAAFFLAVILGVSAGVIAALKQNTKWDYTVMGFAMTGVVIP 142

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790 123 VFWLALLMTLFFSLHLGWLPVSGrfdllypvppvtgfalidaWLAHSPyreemiasaiQHMILPVLVLSVGPTTEVVRLM 202
Cdd:PRK09471 143 SFVVAPLLVLIFAITLHWLPGGG-------------------WNGGAL----------KFMILPMVALSLAYIASIARIT 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790 203 RISTTDVGTQNYIKAAIIRGLPRATVIRRHLLHNALPPIIPQLGLQFSTMLTLEMITEVVFNWPGIGRWLVNAIRQQDFA 282
Cdd:PRK09471 194 RGSMIEVLHSNFIRTARAKGLPMRRIILRHALKPALLPVLSYMGPAFVGIITGSMVIETIFGLPGIGQLFVNGALNRDYS 273

                        250       260
                 ....*....|....*....|....*....
gi 502350790 283 AISAGVMVVGALVITINVLSDIWGAMANP 311
Cdd:PRK09471 274 LVLSLTILVGALTILFNAIVDVLYAVIDP 302
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 92-311 1.31e-19

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 84.66  E-value: 1.31e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790   92 GIPLGITTGVLQHKAADRIISALALLGFSLPVFWLALLMTLFFslhlgwlpvsgrfdllypvppvtgfalidawlahspy 171
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIA------------------------------------- 43

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790  172 reemIASAIQHMILPVLVLSVGPTTEVVRLMRISTTDVGTQNYIKAAIIRGLPRATVIRRHLLHNALPPIIPQLGLQFST 251
Cdd:pfam00528  44 ----ILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGG 119

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790  252 MLTLEMITEVVFNWPGIGRWLVNAIRQQDFAAISAGVMVVGALVITINVLSDIWGAMANP 311
Cdd:pfam00528 120 ALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDP 179
PRK15133 PRK15133
microcin C ABC transporter permease YejB; Provisional
 55-311 5.83e-16

microcin C ABC transporter permease YejB; Provisional


Pssm-ID: 185087 [Multi-domain]  Cd Length: 364  Bit Score: 77.48  E-value: 5.83e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790  55 DFGVSSTNGQPISEQLREVLPATVELCLLAFSLSLLVGIPLGITTGVLQHKAADRIISALALLGFSLPVFWLALLMTLFF 134
Cdd:PRK15133 114 DFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAVRNGSRFDVWSSAFIIIGYAIPAFLFAILLIVFF 193

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790 135 S--LHLGWLP----VSGRFDLLypvppvtgfalidAWLAHspyreemIASAIQHMILPVLVLSVGPTTEVVRLMRISTTD 208
Cdd:PRK15133 194 AggSYFDLFPlrglVSANFDSL-------------PWYQK-------ITDYLWHITLPVLATVIGGFAALTMLTKNSFLD 253

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790 209 VGTQNYIKAAIIRGLPRATVIRRHLLHNALPPIIPQLGLQFSTM-LTLEMITEVVFNWPGIGRWLVNAIRQQDFAAISAG 287
Cdd:PRK15133 254 EIRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIAGFPATFISMfFTGSLLIEVMFSLNGLGLLGYEATVSRDYPVMFGT 333

                        250       260
                 ....*....|....*....|....
gi 502350790 288 VMVVGALVITINVLSDIWGAMANP 311
Cdd:PRK15133 334 LYIFTLIGLLLNIVSDISYTLVDP 357
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 74-296 5.14e-13

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 66.53  E-value: 5.14e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790  74 LPATVELCLLAFSLSLLVGIPLGITTGVLQHKAaDRIISALALLGFSLPVFWLALLMTLFFSLHLGWlpvsgrfdllypv 153
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKL-DRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGW------------- 66

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790 154 ppvtgfalidawlahspyreemiaSAIQHMILPVLVLSVGPTTEVVRLMRISTTDVGTQNYIKAAIIRGLPRATVIRRHL 233
Cdd:cd06261   67 ------------------------GILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRII 122

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 502350790 234 LHNALPPIIPQLGLQFSTMLTLEMITEVVFN----WPGIGRWLVNAIRQQDFAAISAGVMVVGALVI 296
Cdd:cd06261  123 LPLALPPILTGLVLAFARALGEFALVSFLGGgeapGPGTGLLLIFAILFPGDLGVAAAVALILLLLS 189
YejB COG4174
ABC-type microcin C transport system, permease component YejB [Secondary metabolites ...
 49-304 5.61e-10

ABC-type microcin C transport system, permease component YejB [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 443333 [Multi-domain]  Cd Length: 363  Bit Score: 59.81  E-value: 5.61e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790  49 GSLLQGDFGVSSTNGQPISEQLREVLPATVELCLLAFSLSLLVGIPLGITTGVLQHKAADRIISALALLGFSLPVFWLAL 128
Cdd:COG4174  105 KNYLRFDFGESYFRDISVIDLILEKLPVSISLGLWSTLLTYLISIPLGIRKAVRDGSRFDVWTSTVIIVGYAIPGFLFAI 184

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790 129 LMTLFFSlhlgwlpvSGRFDLLYPVPPVTGfaliDAWLAHSPYreEMIASAIQHMILPVLVLSVGPTTEVVRLMRISTTD 208
Cdd:COG4174  185 LLIVLFA--------GGSYFDWFPLRGLTS----DNWDQLSWW--GKILDYLWHLTLPVTAMVIGGFATLTLLTKNSFLD 250

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790 209 VGTQNYIKAAIIRGLPRATVIRRHLLHNALPPIIPQLGLQFSTML-TLEMITEVVFNWPGIGRWLVNAIRQQDFAAISAG 287
Cdd:COG4174  251 EIRKQYVLTARAKGLSERRVLYGHVFRNAMLIVIAGFPAAFIGAFfTGSLLIETIFSLDGLGLLGFEAVVNRDYPVVFGT 330

                        250
                 ....*....|....*..
gi 502350790 288 VMVVGALVITINVLSDI 304
Cdd:COG4174  331 LYIFTLIGLVLKLISDL 347
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 82-256 2.30e-08

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 54.35  E-value: 2.30e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790  82 LLAFSLSLLVGIPLGITTGVLqHKAADRIISALALLGFSLPVFWLALLMTLFFSlhlgwlpvsgrfdllypvppvTGFAL 161
Cdd:COG1173   86 LLAVLIALVIGVLLGLLAGYF-GGWVDAVLMRLVDVLLAFPSLLLAIALVAVLG---------------------PGLLN 143

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502350790 162 IdawlahspyreemiasaiqhmilpVLVLSVGPTTEVVRLMRISTTDVGTQNYIKAAIIRGLPRATVIRRHLLHNALPPI 241
Cdd:COG1173  144 V------------------------ILALGLTGWPGYARLVRAQVLSLREREYVEAARALGASPLRIIFRHILPNVLPPL 199

                        170
                 ....*....|....*
gi 502350790 242 IPQLGLQFSTMLTLE 256
Cdd:COG1173  200 IVQATLGIASAILAE 214
PRK09881 PRK09881
D,D-dipeptide ABC transporter permease;
199-247 2.33e-03

D,D-dipeptide ABC transporter permease;


Pssm-ID: 182131 [Multi-domain]  Cd Length: 296  Bit Score: 39.03  E-value: 2.33e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 502350790 199 VRLMRISTTDVGTQNYIKAAIIRGLPRATVIRRHLLHNALPPIIPQLGL 247
Cdd:PRK09881 172 VRLARGQALVVRQYTYVQAAKTFGASRWHLISWHILRNSLPPLIVQASL 220
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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