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Conserved domains on  [gi|502365365|ref|WP_012772869|]
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MULTISPECIES: sn-glycerol-3-phosphate ABC transporter permease UgpA [Pectobacterium]

Protein Classification

sn-glycerol-3-phosphate ABC transporter permease UgpA( domain architecture ID 10793417)

sn-glycerol-3-phosphate ABC transporter permease UgpA is part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate, and is probably responsible for the translocation of the substrate across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
16-295 3.06e-165

sn-glycerol-3-phosphate ABC transporter permease UgpA;


:

Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 459.68  E-value: 3.06e-165
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365  16 VLVLPQLLITVIFFIWPAGQALWYSVQNLDPFGLSSEFVGMENFKQLFNNPYYLDSFYTTLIFSFLVAGFGMLISLFLAA 95
Cdd:PRK10561   1 LLVAPQLIITVIFFIWPAGEALWYSLQSVDPFGFSSQFVGLDNFVALFHDSYYLDSFWTTIKFSTLVTVSGLLVSLFFAA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365  96 LVDYVIRASRLYQTLIILPYAVAPAVAAVLWMFLFNPGLGLITHFLGLMGYTWNHAQHSGQAMFLVVLASVWKQISYNFL 175
Cdd:PRK10561  81 LVDYVVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHFLAEFGYDWNHAQNSGQAMFLVVFASVWKQISYNFL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365 176 FFLAALQSIPRSLVEAGAIDGAGPVRRFFNLVLPMISPVSFFLLVVNLVYAFFDTFPIIDAATAGGPVQSTTTLIYKIYR 255
Cdd:PRK10561 161 FFFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAPVSFFLLVVNLVYAFFDTFPVIDAATSGGPVQATTTLIYKIYR 240

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 502365365 256 EGFAGLDLSSSAAQSVVLMMLVIGLTIIQFRFVERKVNYQ 295
Cdd:PRK10561 241 EGFTGLDLSSSAAQSVVLMFLVIVLTVVQFRYVESKVRYQ 280
 
Name Accession Description Interval E-value
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
16-295 3.06e-165

sn-glycerol-3-phosphate ABC transporter permease UgpA;


Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 459.68  E-value: 3.06e-165
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365  16 VLVLPQLLITVIFFIWPAGQALWYSVQNLDPFGLSSEFVGMENFKQLFNNPYYLDSFYTTLIFSFLVAGFGMLISLFLAA 95
Cdd:PRK10561   1 LLVAPQLIITVIFFIWPAGEALWYSLQSVDPFGFSSQFVGLDNFVALFHDSYYLDSFWTTIKFSTLVTVSGLLVSLFFAA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365  96 LVDYVIRASRLYQTLIILPYAVAPAVAAVLWMFLFNPGLGLITHFLGLMGYTWNHAQHSGQAMFLVVLASVWKQISYNFL 175
Cdd:PRK10561  81 LVDYVVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHFLAEFGYDWNHAQNSGQAMFLVVFASVWKQISYNFL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365 176 FFLAALQSIPRSLVEAGAIDGAGPVRRFFNLVLPMISPVSFFLLVVNLVYAFFDTFPIIDAATAGGPVQSTTTLIYKIYR 255
Cdd:PRK10561 161 FFFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAPVSFFLLVVNLVYAFFDTFPVIDAATSGGPVQATTTLIYKIYR 240

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 502365365 256 EGFAGLDLSSSAAQSVVLMMLVIGLTIIQFRFVERKVNYQ 295
Cdd:PRK10561 241 EGFTGLDLSSSAAQSVVLMFLVIVLTVVQFRYVESKVRYQ 280
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
2-292 4.24e-82

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 249.67  E-value: 4.24e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365   2 TSSRPVFRSSWLPYVLVLPQLLITVIFFIWPAGQALWYSVQNLDPFGLSSEFVGMENFKQLFNNPYYLDSFYTTLIFSFL 81
Cdd:COG1175    8 AARRRRRRRRLAAYLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGPPPEFVGLDNYARLFTDPRFWNALGNTLLFTVV 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365  82 VAGFGMLISLFLAALVDYVIRASRLYQTLIILPYAVAPAVAAVLWMFLFNPGLGLITHFLGLMGYT-WNHAQHSGQAMFL 160
Cdd:COG1175   88 SVPLQLVLGLLLALLLNRKLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPDYGLLNALLGALGLEpINWLGDPSLALPA 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365 161 VVLASVWKQISYNFLFFLAALQSIPRSLVEAGAIDGAGPVRRFFNLVLPMISPVSFFLLVVNLVYAfFDTFPIIDAATAG 240
Cdd:COG1175  168 VIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGA-LQVFDLVYVLTGG 246

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 502365365 241 GPVQSTTTLIYKIYREGFAGLDLSSSAAQSVVLMMLVIGLTIIQFRFVERKV 292
Cdd:COG1175  247 GPGNSTTTLVLYIYQTAFQQFDFGYASAIAVVLFLIILVLTLLQLRLLRRRE 298
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 125-292 2.97e-09

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 55.38  E-value: 2.97e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365  125 LWMFLFNPGLGLITHFLGLMGYTWNHAQHSGQAMFLVVLASVWKQISYNFLFFLAALQSIPRSLVEAGAIDGAGPVRRFF 204
Cdd:pfam00528  19 LLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFR 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365  205 NLVLPMISPVSFFLLVVNLVYAFFDTFpIIDAATAGGPVQSTTTLIYKIYREGFAgldlSSSAAQSVVLMMLVIGLTIIQ 284
Cdd:pfam00528  99 KIILPNALPPILTGLALAFGGALGGAV-LLEFLGSWPGLGLLLIEAILGYDYPEI----QGPVLAAALILLLLNLLVDIL 173


                  ....*...
gi 502365365  285 FRFVERKV 292
Cdd:pfam00528 174 QRLLDPRV 181
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 76-278 3.03e-07

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 49.58  E-value: 3.03e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365  76 LIFSFLVAGFGMLISLFLAALVDYVIRASRLYQTLIILPYAVAPAVAAVLWMFLFnpglglithFLGLMGYTWNHAQHSG 155
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLL---------LVLLFGVLLGWGILPG 71

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365 156 QAMFLVVLASVWkQISYNFLFFLAALQSIPRSLVEAGAIDGAGPVRRFFNLVLPMISPVSFFLLVVNLVYAFFDTFPIid 235
Cdd:cd06261   72 LGLPALILALLL-IAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALV-- 148

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 502365365 236 aATAGGPVQSTTTLIYKIYREGFAGLDLSSSAAQSVVLMMLVI 278
Cdd:cd06261  149 -SFLGGGEAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 12-209 1.53e-06

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 49.29  E-value: 1.53e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365   12 WLPYVLVLPQLLITVIFFIWPAGQALWYSVQNLDpfglsSEFVGMENFKQLFNNPYYLDSFYTTLIFSFLVAGfgmlISL 91
Cdd:TIGR03262   1 LIARLLLAGMILALLLFLLLPLLALLTKSVYDSD-----GDFIGLANFAEYFATPGLLQSLGNSLTVSAIVTA----IVV 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365   92 FLAALVDYVIRASR-----LYQTLIILPYAVAPAVAAVLWMFLFNpGLGLITHFLGLmgytwnhaqHSGQAMFLVVLASV 166
Cdd:TIGR03262  72 PLAFAFAYALTRSRipgkgAFRLVALLPLLAPSLLPAISLIYLFG-NQGLLKGLLGG---------FSIYGFWGIVIGEV 141

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 502365365  167 WKQISYNFLFFLAALQSIPRSLVEAGAIDGAGPVRRFFNLVLP 209
Cdd:TIGR03262 142 FYTFPHALMILVTALSLADGRLYEAARAMGASPWRTFFTVTLP 184
 
Name Accession Description Interval E-value
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
16-295 3.06e-165

sn-glycerol-3-phosphate ABC transporter permease UgpA;


Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 459.68  E-value: 3.06e-165
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365  16 VLVLPQLLITVIFFIWPAGQALWYSVQNLDPFGLSSEFVGMENFKQLFNNPYYLDSFYTTLIFSFLVAGFGMLISLFLAA 95
Cdd:PRK10561   1 LLVAPQLIITVIFFIWPAGEALWYSLQSVDPFGFSSQFVGLDNFVALFHDSYYLDSFWTTIKFSTLVTVSGLLVSLFFAA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365  96 LVDYVIRASRLYQTLIILPYAVAPAVAAVLWMFLFNPGLGLITHFLGLMGYTWNHAQHSGQAMFLVVLASVWKQISYNFL 175
Cdd:PRK10561  81 LVDYVVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHFLAEFGYDWNHAQNSGQAMFLVVFASVWKQISYNFL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365 176 FFLAALQSIPRSLVEAGAIDGAGPVRRFFNLVLPMISPVSFFLLVVNLVYAFFDTFPIIDAATAGGPVQSTTTLIYKIYR 255
Cdd:PRK10561 161 FFFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAPVSFFLLVVNLVYAFFDTFPVIDAATSGGPVQATTTLIYKIYR 240

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 502365365 256 EGFAGLDLSSSAAQSVVLMMLVIGLTIIQFRFVERKVNYQ 295
Cdd:PRK10561 241 EGFTGLDLSSSAAQSVVLMFLVIVLTVVQFRYVESKVRYQ 280
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
2-292 4.24e-82

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 249.67  E-value: 4.24e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365   2 TSSRPVFRSSWLPYVLVLPQLLITVIFFIWPAGQALWYSVQNLDPFGLSSEFVGMENFKQLFNNPYYLDSFYTTLIFSFL 81
Cdd:COG1175    8 AARRRRRRRRLAAYLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGPPPEFVGLDNYARLFTDPRFWNALGNTLLFTVV 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365  82 VAGFGMLISLFLAALVDYVIRASRLYQTLIILPYAVAPAVAAVLWMFLFNPGLGLITHFLGLMGYT-WNHAQHSGQAMFL 160
Cdd:COG1175   88 SVPLQLVLGLLLALLLNRKLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPDYGLLNALLGALGLEpINWLGDPSLALPA 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365 161 VVLASVWKQISYNFLFFLAALQSIPRSLVEAGAIDGAGPVRRFFNLVLPMISPVSFFLLVVNLVYAfFDTFPIIDAATAG 240
Cdd:COG1175  168 VIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGA-LQVFDLVYVLTGG 246

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 502365365 241 GPVQSTTTLIYKIYREGFAGLDLSSSAAQSVVLMMLVIGLTIIQFRFVERKV 292
Cdd:COG1175  247 GPGNSTTTLVLYIYQTAFQQFDFGYASAIAVVLFLIILVLTLLQLRLLRRRE 298
LplB COG4209
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and ...
 8-279 1.97e-30

ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 443357 [Multi-domain]  Cd Length: 316  Bit Score: 116.34  E-value: 1.97e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365   8 FRSSWLPYVLVLPQLLITVIFFIWP-AGqaLWYSVQNLDPFG--LSSEFVGMENFKQLFNNPYYLDSFYTTLIFSFLVAG 84
Cdd:COG4209   23 LKRDWQLYLMLLPGLIYLLIFSYLPmYG--IVIAFKDYNPFKgiFGSPWVGLKNFKFLFSSPDFWRVLRNTLLISLLKLV 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365  85 FGMLISLFLAALVDYVI--RASRLYQTLIILPYAVAPAVAAVLWMFLFNPGLGLITHFLGLMGY-TWNHAQHSGQAMFLV 161
Cdd:COG4209  101 FGFPLPIILALLLNELRskRFKKTVQTISYLPHFLSWVVVAGIVYQFLSPDTGLVNQLLRALGGePINFLTEPKYFRPIY 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365 162 VLASVWKQISYNFLFFLAALQSIPRSLVEAGAIDGAGPVRRFFNLVLPMISPVSFFLLVVNL---VYAFFDTFPIIDAat 238
Cdd:COG4209  181 VFSGIWKEAGWGSIIYLAAITGIDPELYEAAAIDGAGRWQQIWHITLPGIRPTIVILLILNIgniLNVGFEQIYLLYN-- 258

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 502365365 239 agGPVQSTTTLI--YkIYREGFAGLDLSSSAA----QSVVLMMLVIG 279
Cdd:COG4209  259 --PLNYSTSDVIdtY-VYRIGLQNGDYSYATAvglfKSVVGLILVLI 302
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 5-291 7.59e-27

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 106.00  E-value: 7.59e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365   5 RPVFRSSWLPYVLVLPQLLITVIFFIWPAGQALWYSVQNLDPFGLSSEFVGMENFKQLFNNPYYLDSFYTTLIFSFLVAG 84
Cdd:COG1176    2 SAALRRRLRPLLLLLPALLWLLLFFVLPLLLLLVYSFTTRDPYGGVVPGFTLENYARLFTDPLYLKVLLRTLWIALLTTL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365  85 FGMLISLFLA-ALVDYVIRASRLYQTLIILPYAVAPAVAAVLWMFLFNPGlGLITHFLGLMG---------YTWnhaqhs 154
Cdd:COG1176   82 ICLLLGYPIAyFLARAPPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRN-GLLNSLLLALGlideplrllYTE------ 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365 155 gqamFLVVLASVWKQISYNFLFFLAALQSIPRSLVEAGAIDGAGPVRRFFNLVLPMISP--VSFFLLVVNLVYAFFDTFP 232
Cdd:COG1176  155 ----FAVVIGLVYVYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPgiIAGSLLVFIPALGAFVTPA 230

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 502365365 233 IIdaataGGPvqSTTTLIYKIYREGFAGLDLSSSAAQSVVLMMLVIGLTIIQFRFVERK 291
Cdd:COG1176  231 LL-----GGG--KVLMIGNLIYQQFLSALNWPLAAALAVVLLLIVLLVLLLYLRLLRRR 282
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
9-291 1.36e-20

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 91.38  E-value: 1.36e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365   9 RSSWLPYVLVLPQLLITVIFFIWPAGQALWYSVQnldpfglssefVGMENFKQLFNNPYYLDSFYTTLIFSFLVAGFGML 88
Cdd:COG1178    4 RPRRRPRLLLLLLALLLALLVLLPLLALLLRAFT-----------DGLANFWALLSDPYLWRALGNTLLLALLVTLLSLL 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365  89 ISLFLAALVD-YVIRASRLYQTLIILPYAVAPAVAAVLWMFLFNPGlGLITHFLGLMGYTWNHAQHSgqaMFLVVLASVW 167
Cdd:COG1178   73 LGVPLAWLLArTDFPGRRLLRWLLLLPLALPPYVVALAWIALFGPN-GLLNTLLRALFGLEPPDIYG---LGGIILVLVL 148

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365 168 KQISYNFLFFLAALQSIPRSLVEAGAIDGAGPVRRFFNLVLPMISPVSFFLLVVNLVYAFFDtFPIidAATAGGPVQSTT 247
Cdd:COG1178  149 FNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLAD-FGT--PLVLGGGYTTLT 225

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 502365365 248 TLIYKIYREGFaglDLSSSAAQSVVLMMLVIGLTIIQFRFVERK 291
Cdd:COG1178  226 TAIYQAWLGDF---DLGAAAALALVLLLLVLLLLLLERRLRRRR 266
malF PRK10999
maltose ABC transporter permease MalF;
53-293 5.69e-19

maltose ABC transporter permease MalF;


Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 86.55  E-value: 5.69e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365  53 FVGMENFKQLFNNPY----YLDSFYTTLIFSFLVAGFGMLISLFLAALVDY-VIRASRLYQTLIILPYAVAPAVAAVLWM 127
Cdd:PRK10999 264 TIGWKNFTRVFTDEGiqkpFIAIFIWTVVFSLLTVVLTVAVGMVLACLVQWeALKGKAVYRVLLILPYAVPSFISILIFK 343

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365 128 FLFNPGLGLITHFL-GLMGYT--WNHAQHSGQAMFLVVlaSVWKQISYNFLFFLAALQSIPRSLVEAGAIDGAGPVRRFF 204
Cdd:PRK10999 344 GLFNQSFGEINMMLsALFGIKpaWFSDPTLAKTMILIV--NTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFF 421

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365 205 NLVLPMISPVSFFLLVVNlvYAF-FDTFPIIDAATAGGP--VQSTT---------TLIYKIYREGFAGLDLSSSAAQSVV 272
Cdd:PRK10999 422 KITLPLLIKPLTPLMIAS--FAFnFNNFVLIQLLTNGGPdmIGTTTpagytdllvSYTYRIAFEGGGGQDFGLAAAIATL 499

                        250       260
                 ....*....|....*....|.
gi 502365365 273 LMMLVIGLTIIQFRFVERKVN 293
Cdd:PRK10999 500 IFLLVGALAILNLKATKMKFD 520
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
3-291 1.14e-12

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 67.88  E-value: 1.14e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365   3 SSRPVFRSSWLPYVLVLPQLLITVIFFIWPAGQALWYSVQNLDPFGLSsefvgMENFKQLFNNPYYLDSFYTTLIFSFLV 82
Cdd:COG1178  276 RRPRRVKLGRWRWLALALCLLLVLLGLLLPLLALLLWSLTKALDDNLT-----LDNYRFVLLDPSLLRALLNSLLLALLA 350

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365  83 AGFGMLISLFLA-ALVDYVIRASRLYQTLIILPYAVapavaavlwmflfnPG----LGLITHFLGLMGYTWnhaqhsGQA 157
Cdd:COG1178  351 ALLAVLLALLLAyLVRRRRGRLARLLDRLAMLPYAV--------------PGivlgLGLLLLFNRPLPLLL------YGT 410

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365 158 MFLVVLASVWKQISYNFLFFLAALQSIPRSLVEAGAIDGAGPVRRFFNLVLPMISPVsfflLVVNLVYAFFDTFPIIDAA 237
Cdd:COG1178  411 LAILVLAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPG----LLAAALLVFVTSMKELSAT 486

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 502365365 238 TAGGPvQSTTTLIYKIYREgFAGLDLSSSAAQSVVLMMLVIGLTIIQFRFVERK 291
Cdd:COG1178  487 LLLRP-PGFETLAVLIYQL-ASSGRYGEAAALALLLVLVSLLPVLLLERLLGRR 538
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 22-291 4.19e-12

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 64.75  E-value: 4.19e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365  22 LLITVIFFIWPAGQALWYSVQNLDPFGLSSEFVGMENFKQLFNNPYYLDSFYTTLIFSFLVAGFGMLISLFLA-ALVDYV 100
Cdd:COG1177   13 LALVLLFLYLPILVLVLYSFNDSWFLTFPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAAlALARYR 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365 101 IRASRLYQTLIILPyavapavaavlwmfLFNP----GLGLITHFLGLmgytwnhaqHSGQAMFLVVLASVWKQISYNFLF 176
Cdd:COG1177   93 FRGRRLLLALLLLP--------------LVVPgivlGVALLLLFSAL---------GLSGGLWGLILAHVVFTLPFVVLV 149

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365 177 FLAALQSIPRSLVEAGAIDGAGPVRRFFNLVLPMISP--VSFFLLVVNLVyafFDTFPIidAATAGGPvqSTTTLIYKIY 254
Cdd:COG1177  150 VLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPgiLAGALLAFTLS---FDEFVI--TLFLAGP--GVTTLPVYIY 222

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 502365365 255 REGFAGLDLSSSAAqSVVLMMLVIGLTIIQFRFVERK 291
Cdd:COG1177  223 SMIRRGISPEINAL-STLLILLSLLLLLLAERLRRRG 258
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 125-292 2.97e-09

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 55.38  E-value: 2.97e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365  125 LWMFLFNPGLGLITHFLGLMGYTWNHAQHSGQAMFLVVLASVWKQISYNFLFFLAALQSIPRSLVEAGAIDGAGPVRRFF 204
Cdd:pfam00528  19 LLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFR 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365  205 NLVLPMISPVSFFLLVVNLVYAFFDTFpIIDAATAGGPVQSTTTLIYKIYREGFAgldlSSSAAQSVVLMMLVIGLTIIQ 284
Cdd:pfam00528  99 KIILPNALPPILTGLALAFGGALGGAV-LLEFLGSWPGLGLLLIEAILGYDYPEI----QGPVLAAALILLLLNLLVDIL 173


                  ....*...
gi 502365365  285 FRFVERKV 292
Cdd:pfam00528 174 QRLLDPRV 181
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 1-214 9.44e-09

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 55.10  E-value: 9.44e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365   1 MTSSRPVFR---SSWLPYVLVLPQLLITVIFFIWPAGQALWYS--VQNLDPFGLSSEFvGMENFKQLFNNPyyldSFYTT 75
Cdd:COG0395    1 MSATARRRRrrlGRILLYLLLILLALLFLFPLYWMVVTSFKPPaeIFSGPPSLLPSEF-TLENYRAAFTDG----PFGRY 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365  76 LIFSFLVAGFGMLISLFLAALVDYVI-----RASRLYQTLIILPYAVAPAVAAVLWMFLFNpGLGLITHFLGLmgytwnh 150
Cdd:COG0395   76 LLNSLIVAVVSTVLSLLLSSLAAYALarfrfRGRKLLFLLILATLMIPGQVLLIPLYLLFR-QLGLLNTYWGL------- 147

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 502365365 151 aqhsgqamflvVLASVWKQISYNFLFFLAALQSIPRSLVEAGAIDGAGPVRRFFNLVLPMISPV 214
Cdd:COG0395  148 -----------ILPYLAFGLPFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPA 200
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 76-278 3.03e-07

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 49.58  E-value: 3.03e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365  76 LIFSFLVAGFGMLISLFLAALVDYVIRASRLYQTLIILPYAVAPAVAAVLWMFLFnpglglithFLGLMGYTWNHAQHSG 155
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLL---------LVLLFGVLLGWGILPG 71

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365 156 QAMFLVVLASVWkQISYNFLFFLAALQSIPRSLVEAGAIDGAGPVRRFFNLVLPMISPVSFFLLVVNLVYAFFDTFPIid 235
Cdd:cd06261   72 LGLPALILALLL-IAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALV-- 148

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 502365365 236 aATAGGPVQSTTTLIYKIYREGFAGLDLSSSAAQSVVLMMLVI 278
Cdd:cd06261  149 -SFLGGGEAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 1-227 8.52e-07

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 49.38  E-value: 8.52e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365   1 MTSSRPVFRSSWLPYVLVLPQLLITVIFFIWP----------AGQALwySVQNLDPFGLSsefvgMENFKQLFNNPYYLD 70
Cdd:COG3833    1 MSRRKSRKRRRRLKLGLRHLVLIILAIIALFPilwvvsasfnPGGSL--YSSSLIPENFT-----LENYKKLFTETPFLR 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365  71 SFYTTLIfsflVAGFGMLISLFLAALVDYVI-------RASRLYQTLIILPYAVAPAVAAVLWMFLfnpGLGLITHFLGL 143
Cdd:COG3833   74 WFLNSLI----VAVVTAIISVFLAALAAYAFsrfrfkgRKAGLLALLLLQMFPAFLALVALYLLLS---ALGLLNTLLGL 146

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365 144 MgytwnhaqhsgqamfLVVLASvwkQISYNFLFFLAALQSIPRSLVEAGAIDGAGPVRRFFNLVLPMISPVsfflLVVNL 223
Cdd:COG3833  147 I---------------LVYLGG---AIPFNTWLMKGYFDTIPKELDEAAKIDGASHFQIFFRIILPLAKPI----LAVVA 204


                 ....
gi 502365365 224 VYAF 227
Cdd:COG3833  205 LLSF 208
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 12-209 1.53e-06

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 49.29  E-value: 1.53e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365   12 WLPYVLVLPQLLITVIFFIWPAGQALWYSVQNLDpfglsSEFVGMENFKQLFNNPYYLDSFYTTLIFSFLVAGfgmlISL 91
Cdd:TIGR03262   1 LIARLLLAGMILALLLFLLLPLLALLTKSVYDSD-----GDFIGLANFAEYFATPGLLQSLGNSLTVSAIVTA----IVV 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365   92 FLAALVDYVIRASR-----LYQTLIILPYAVAPAVAAVLWMFLFNpGLGLITHFLGLmgytwnhaqHSGQAMFLVVLASV 166
Cdd:TIGR03262  72 PLAFAFAYALTRSRipgkgAFRLVALLPLLAPSLLPAISLIYLFG-NQGLLKGLLGG---------FSIYGFWGIVIGEV 141

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 502365365  167 WKQISYNFLFFLAALQSIPRSLVEAGAIDGAGPVRRFFNLVLP 209
Cdd:TIGR03262 142 FYTFPHALMILVTALSLADGRLYEAARAMGASPWRTFFTVTLP 184
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 9-280 3.65e-06

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 47.69  E-value: 3.65e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365   9 RSSWLPYVLVLPQLLITVIFFIWPAGQALWYSVQNLDPFGLssefvgmENFKQLFNNPYYLDSFYTTLIFSFLVAGFGML 88
Cdd:PRK15050  19 RRRLRPLLWLLLPLLVLAPLVVYPLVRVVLQSLTGEHGLGL-------ATYRAVLGSPDFRGALLTTLQIAFASTAGCLV 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365  89 ISLFLAALVDYV-----IRASRLYQTLIILPyavapavaavlwMFLFNPGLGLITHFLGLMGYTWNHAQHsGQAMFLVVL 163
Cdd:PRK15050  92 LGVLLALVLAFVpfpgaSLVGRFIDTFVAFP------------SFLITLAFTFLYGSAGSVNIALQRLFG-LEAPPLDFL 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365 164 ASVWKQISYNFLFF--------LAALQSIPRSLVEAGAIDGAGPVRRFFNLVLPMISPVSF------FLLVVNlvyaffd 229
Cdd:PRK15050 159 YSPGGVILAEITFYtpfvvrplLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAaggslcLLLTLN------- 231

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 502365365 230 TFPIIDAATAGGPVqsttTLIYKIYREGFAGLDLSSSAAQSVVLMMLVIGL 280
Cdd:PRK15050 232 EFGIVLFTGAKDVV----TLPVLIYSKAIVDFDYPTACAIAVVNLALSLGL 278
PRK10683 PRK10683
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 58-210 3.60e-03

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182646  Cd Length: 317  Bit Score: 38.54  E-value: 3.60e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502365365  58 NFKQLFNNPYYLDSFYTTLIFSFLVAGFGMLISLFLAALVDYVIRASR-LYQTLIILPYAVAPAVAAVLWMFLFNPGlGL 136
Cdd:PRK10683  85 NFLQLTDDPLYFDAYLQSLQVAAISTLCCLLIGYPLAWAVAHSKPSTRnILLLLVILPSWTSFLIRVYAWMGILKNN-GV 163

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 502365365 137 ITHFLGLMGYTwNHAQHSGQAMFLVVLASVWKQISYNFLFFLAALQSIPRSLVEAGAIDGAGPVRRFFNLVLPM 210
Cdd:PRK10683 164 LNNFLLWLGVI-DQPLTILHTNLAVYIGIVYAYLPFMVLPIYTALTRIDYSLVEAALDLGARPLKTFFSVIVPL 236
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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