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Conserved domains on  [gi|502374887|ref|WP_012775247|]
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helix-turn-helix domain-containing protein [Streptococcus suis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
XRE COG1476
DNA-binding transcriptional regulator, XRE-family HTH domain [Transcription];
1-62 5.63e-19

DNA-binding transcriptional regulator, XRE-family HTH domain [Transcription];


:

Pssm-ID: 441085 [Multi-domain]  Cd Length: 68  Bit Score: 75.65  E-value: 5.63e-19
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 502374887   1 MNFGQQIKDLRKKKGLTQEQFALKLNVTRQAVSNWENDKNLPDLELLILMSSVFSISLDQLI 62
Cdd:COG1476    3 KKLGNRLKELRKERGLTQEELAELLGVSRQTISAIENGKYNPSLELALKIARALGVSLEELF 64
DUF3955 pfam13127
Protein of unknown function (DUF3955); This family of proteins is functionally uncharacterized. ...
 92-149 1.80e-18

Protein of unknown function (DUF3955); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 68 and 87 amino acids in length. There are two completely conserved residues (G and E) that may be functionally important.


:

Pssm-ID: 432987  Cd Length: 59  Bit Score: 74.17  E-value: 1.80e-18
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 502374887   92 TIIGSFLMLLGFVCFVIKANSVEYIDAEGILHENFYLIPVGYLLVFTGALATLLSGLA 149
Cdd:pfam13127   2 YRIGLLLLLLGIICLFISNFSGSYVDSDGILHEPFFLIPIGYLFLFIGIISFVGVALK 59
 
Name Accession Description Interval E-value
XRE COG1476
DNA-binding transcriptional regulator, XRE-family HTH domain [Transcription];
1-62 5.63e-19

DNA-binding transcriptional regulator, XRE-family HTH domain [Transcription];


Pssm-ID: 441085 [Multi-domain]  Cd Length: 68  Bit Score: 75.65  E-value: 5.63e-19
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 502374887   1 MNFGQQIKDLRKKKGLTQEQFALKLNVTRQAVSNWENDKNLPDLELLILMSSVFSISLDQLI 62
Cdd:COG1476    3 KKLGNRLKELRKERGLTQEELAELLGVSRQTISAIENGKYNPSLELALKIARALGVSLEELF 64
DUF3955 pfam13127
Protein of unknown function (DUF3955); This family of proteins is functionally uncharacterized. ...
 92-149 1.80e-18

Protein of unknown function (DUF3955); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 68 and 87 amino acids in length. There are two completely conserved residues (G and E) that may be functionally important.


Pssm-ID: 432987  Cd Length: 59  Bit Score: 74.17  E-value: 1.80e-18
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 502374887   92 TIIGSFLMLLGFVCFVIKANSVEYIDAEGILHENFYLIPVGYLLVFTGALATLLSGLA 149
Cdd:pfam13127   2 YRIGLLLLLLGIICLFISNFSGSYVDSDGILHEPFFLIPIGYLFLFIGIISFVGVALK 59
HTH_XRE cd00093
Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the ...
 4-61 3.29e-16

Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.


Pssm-ID: 238045 [Multi-domain]  Cd Length: 58  Bit Score: 68.35  E-value: 3.29e-16
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 502374887   4 GQQIKDLRKKKGLTQEQFALKLNVTRQAVSNWENDKNLPDLELLILMSSVFSISLDQL 61
Cdd:cd00093    1 GERLKELRKEKGLTQEELAEKLGVSRSTISRIENGKRNPSLETLEKLAKALGVSLDEL 58
HTH_XRE smart00530
Helix-turn-helix XRE-family like proteins;
7-61 2.12e-15

Helix-turn-helix XRE-family like proteins;


Pssm-ID: 197775 [Multi-domain]  Cd Length: 56  Bit Score: 66.00  E-value: 2.12e-15
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 502374887     7 IKDLRKKKGLTQEQFALKLNVTRQAVSNWENDKNLPDLELLILMSSVFSISLDQL 61
Cdd:smart00530   2 LKELREEKGLTQEELAEKLGVSRSTLSRIENGKRKPSLETLKKLAKALGVSLDEL 56
HTH_3 pfam01381
Helix-turn-helix; This large family of DNA binding helix-turn helix proteins includes Cro and ...
 7-61 3.30e-15

Helix-turn-helix; This large family of DNA binding helix-turn helix proteins includes Cro and CI. Within the protein Swiss:Q5F9C2, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be that of a DNA-binding regulator, the function of most other members, so is not necessarily characteriztic of the whole family.


Pssm-ID: 460181 [Multi-domain]  Cd Length: 55  Bit Score: 65.64  E-value: 3.30e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 502374887    7 IKDLRKKKGLTQEQFALKLNVTRQAVSNWENDKNLPDLELLILMSSVFSISLDQL 61
Cdd:pfam01381   1 LKELREELGLSQEELAEKLGVSRSTISKIENGKREPSLETLKKLAEALGVSLDEL 55
CxxCG_CxxCG_HTH TIGR03830
putative zinc finger/helix-turn-helix protein, YgiT family; This model describes a family of ...
 4-62 1.02e-08

putative zinc finger/helix-turn-helix protein, YgiT family; This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.


Pssm-ID: 274805 [Multi-domain]  Cd Length: 127  Bit Score: 50.71  E-value: 1.02e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 502374887    4 GQQIKDLRKKKGLTQEQFALKLNVTRQAVSNWENDKNLPdlellilmssvfSISLDQLI 62
Cdd:TIGR03830  67 GPEIRRIRKKLGLSQREAAELLGGGVNAFSRYERGEVRP------------SKALDKLL 113
PHA01976 PHA01976
helix-turn-helix protein
 1-64 3.74e-07

helix-turn-helix protein


Pssm-ID: 177330 [Multi-domain]  Cd Length: 67  Bit Score: 44.95  E-value: 3.74e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 502374887   1 MNFGQQIKDLRKKKGLTQEQFALKLNVTRQAVSNWENDKNLPDLELLILMSSVFSISLDQLILG 64
Cdd:PHA01976   1 MSFAIQLIKARNARAWSAPELSRRAGVRHSLIYDFEADKRLPNLKTLLRLADALGVTLDWLCGR 64
VC1465_fam NF040522
VC1465 family Xer recombination activation factor;
7-40 1.62e-04

VC1465 family Xer recombination activation factor;


Pssm-ID: 439737 [Multi-domain]  Cd Length: 111  Bit Score: 38.97  E-value: 1.62e-04
                         10        20        30
                 ....*....|....*....|....*....|....
gi 502374887   7 IKDLRKKKGLTQEQFALKLNVTRQAVSNWENDKN 40
Cdd:NF040522   1 IKETREKAGLTRQQAAEMLRVSLRTVQNWETGKV 34
 
Name Accession Description Interval E-value
XRE COG1476
DNA-binding transcriptional regulator, XRE-family HTH domain [Transcription];
1-62 5.63e-19

DNA-binding transcriptional regulator, XRE-family HTH domain [Transcription];


Pssm-ID: 441085 [Multi-domain]  Cd Length: 68  Bit Score: 75.65  E-value: 5.63e-19
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 502374887   1 MNFGQQIKDLRKKKGLTQEQFALKLNVTRQAVSNWENDKNLPDLELLILMSSVFSISLDQLI 62
Cdd:COG1476    3 KKLGNRLKELRKERGLTQEELAELLGVSRQTISAIENGKYNPSLELALKIARALGVSLEELF 64
HipB COG1396
Transcriptional regulator, contains XRE-family HTH domain [Transcription];
1-67 7.69e-19

Transcriptional regulator, contains XRE-family HTH domain [Transcription];


Pssm-ID: 441006 [Multi-domain]  Cd Length: 83  Bit Score: 75.80  E-value: 7.69e-19
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 502374887   1 MNFGQQIKDLRKKKGLTQEQFALKLNVTRQAVSNWENDKNLPDLELLILMSSVFSISLDQLiLGGTD 67
Cdd:COG1396    6 KALGERLRELRKARGLTQEELAERLGVSRSTISRIERGRRNPSLETLLKLAKALGVSLDEL-LGGAD 71
DUF3955 pfam13127
Protein of unknown function (DUF3955); This family of proteins is functionally uncharacterized. ...
 92-149 1.80e-18

Protein of unknown function (DUF3955); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 68 and 87 amino acids in length. There are two completely conserved residues (G and E) that may be functionally important.


Pssm-ID: 432987  Cd Length: 59  Bit Score: 74.17  E-value: 1.80e-18
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 502374887   92 TIIGSFLMLLGFVCFVIKANSVEYIDAEGILHENFYLIPVGYLLVFTGALATLLSGLA 149
Cdd:pfam13127   2 YRIGLLLLLLGIICLFISNFSGSYVDSDGILHEPFFLIPIGYLFLFIGIISFVGVALK 59
HTH_XRE cd00093
Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the ...
 4-61 3.29e-16

Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.


Pssm-ID: 238045 [Multi-domain]  Cd Length: 58  Bit Score: 68.35  E-value: 3.29e-16
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 502374887   4 GQQIKDLRKKKGLTQEQFALKLNVTRQAVSNWENDKNLPDLELLILMSSVFSISLDQL 61
Cdd:cd00093    1 GERLKELRKEKGLTQEELAEKLGVSRSTISRIENGKRNPSLETLEKLAKALGVSLDEL 58
HTH_XRE smart00530
Helix-turn-helix XRE-family like proteins;
7-61 2.12e-15

Helix-turn-helix XRE-family like proteins;


Pssm-ID: 197775 [Multi-domain]  Cd Length: 56  Bit Score: 66.00  E-value: 2.12e-15
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 502374887     7 IKDLRKKKGLTQEQFALKLNVTRQAVSNWENDKNLPDLELLILMSSVFSISLDQL 61
Cdd:smart00530   2 LKELREEKGLTQEELAEKLGVSRSTLSRIENGKRKPSLETLKKLAKALGVSLDEL 56
HTH_3 pfam01381
Helix-turn-helix; This large family of DNA binding helix-turn helix proteins includes Cro and ...
 7-61 3.30e-15

Helix-turn-helix; This large family of DNA binding helix-turn helix proteins includes Cro and CI. Within the protein Swiss:Q5F9C2, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be that of a DNA-binding regulator, the function of most other members, so is not necessarily characteriztic of the whole family.


Pssm-ID: 460181 [Multi-domain]  Cd Length: 55  Bit Score: 65.64  E-value: 3.30e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 502374887    7 IKDLRKKKGLTQEQFALKLNVTRQAVSNWENDKNLPDLELLILMSSVFSISLDQL 61
Cdd:pfam01381   1 LKELREELGLSQEELAEKLGVSRSTISKIENGKREPSLETLKKLAEALGVSLDEL 55
aMBF1 COG1813
Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and ...
 2-60 7.12e-15

Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains [Translation, ribosomal structure and biogenesis];


Pssm-ID: 441418 [Multi-domain]  Cd Length: 70  Bit Score: 65.34  E-value: 7.12e-15
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 502374887   2 NFGQQIKDLRKKKGLTQEQFALKLNVTRQAVSNWENDKNLPDLELLILMSSVFSISLDQ 60
Cdd:COG1813   12 DYGERIREAREARGLSQEELAEKLGVSESTIRRIERGEATPSLDTLRKLEKALGISLAE 70
YiaG COG2944
DNA-binding transcriptional regulator YiaG, XRE-type HTH domain [Transcription];
4-50 1.24e-11

DNA-binding transcriptional regulator YiaG, XRE-type HTH domain [Transcription];


Pssm-ID: 442187 [Multi-domain]  Cd Length: 64  Bit Score: 56.48  E-value: 1.24e-11
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 502374887   4 GQQIKDLRKKKGLTQEQFALKLNVTRQAVSNWENDKNLPD---LELLILM 50
Cdd:COG2944    8 PEEIRALRERLGLSQAEFAALLGVSVSTVRRWEQGRRKPSgaaLKLLRLL 57
CxxCG_CxxCG_HTH TIGR03830
putative zinc finger/helix-turn-helix protein, YgiT family; This model describes a family of ...
 4-62 1.02e-08

putative zinc finger/helix-turn-helix protein, YgiT family; This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.


Pssm-ID: 274805 [Multi-domain]  Cd Length: 127  Bit Score: 50.71  E-value: 1.02e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 502374887    4 GQQIKDLRKKKGLTQEQFALKLNVTRQAVSNWENDKNLPdlellilmssvfSISLDQLI 62
Cdd:TIGR03830  67 GPEIRRIRKKLGLSQREAAELLGGGVNAFSRYERGEVRP------------SKALDKLL 113
PHA01976 PHA01976
helix-turn-helix protein
 1-64 3.74e-07

helix-turn-helix protein


Pssm-ID: 177330 [Multi-domain]  Cd Length: 67  Bit Score: 44.95  E-value: 3.74e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 502374887   1 MNFGQQIKDLRKKKGLTQEQFALKLNVTRQAVSNWENDKNLPDLELLILMSSVFSISLDQLILG 64
Cdd:PHA01976   1 MSFAIQLIKARNARAWSAPELSRRAGVRHSLIYDFEADKRLPNLKTLLRLADALGVTLDWLCGR 64
couple_hipB TIGR03070
transcriptional regulator, y4mF family; Members of this family belong to a clade of ...
 3-58 5.20e-07

transcriptional regulator, y4mF family; Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems. [Regulatory functions, DNA interactions]


Pssm-ID: 213767 [Multi-domain]  Cd Length: 58  Bit Score: 44.57  E-value: 5.20e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 502374887    3 FGQQIKDLRKKKGLTQEQFALKLNVTRQAVSNWENDKNLPDLELLILMSSVFSISL 58
Cdd:TIGR03070   3 IGILVRARRKALGLTQADLADLAGVGLRFIRDLENGKPTVRLDKVLRVLDALGLEL 58
HTH_19 pfam12844
Helix-turn-helix domain; Members of this family contains a DNA-binding helix-turn-helix domain. ...
 4-64 8.95e-07

Helix-turn-helix domain; Members of this family contains a DNA-binding helix-turn-helix domain. This family contains many example antitoxins from bacterial toxin-antitoxin systems. These antitoxins are likely to be DNA-binding domains.


Pssm-ID: 463728 [Multi-domain]  Cd Length: 64  Bit Score: 43.82  E-value: 8.95e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 502374887    4 GQQIKDLRKKKGLTQEQFALKLNVTRQAVSNWENDKNLPDLELLILMSSVFSISLDQLILG 64
Cdd:pfam12844   1 GERLRKAREERGLTQEELAERLGISRSQLSAIENGKSVPPAETLYKIAELLGVPANWLLQG 61
AF2118 COG3620
Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain ...
 1-63 1.34e-06

Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair) [Transcription];


Pssm-ID: 442838 [Multi-domain]  Cd Length: 95  Bit Score: 44.24  E-value: 1.34e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 502374887   1 MNFGQQIKDLRKKKGLTQEQFALKLNVTRQAVSNWENDKNLPDLELLILMSSVFSISLDQLIL 63
Cdd:COG3620   16 DTLGEALRLMRKELGLSQLPVAELVGVSQSDILRIESGKRDPTVSTLEKIAEALGKELSAVLV 78
RodZ COG1426
Cytoskeletal protein RodZ, contains Xre-like HTH and DUF4115 domains [Cell cycle control, cell ...
 1-39 6.69e-06

Cytoskeletal protein RodZ, contains Xre-like HTH and DUF4115 domains [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441035 [Multi-domain]  Cd Length: 71  Bit Score: 41.71  E-value: 6.69e-06
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 502374887   1 MNFGQQIKDLRKKKGLTQEQFALKLNVTRQAVSNWENDK 39
Cdd:COG1426    4 ETIGELLRQAREAKGLSLEDVAERTKISVSYLEAIEEGD 42
HTH_31 pfam13560
Helix-turn-helix domain; This domain is a helix-turn-helix domain that probably binds to DNA.
 3-37 1.78e-05

Helix-turn-helix domain; This domain is a helix-turn-helix domain that probably binds to DNA.


Pssm-ID: 433309 [Multi-domain]  Cd Length: 64  Bit Score: 40.59  E-value: 1.78e-05
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 502374887    3 FGQQIKDLRKKKGLTQEQFALKLNVTRQAVSNWEN 37
Cdd:pfam13560   2 LGARLRRLRERAGLSQEALARRLGVSRSTLSRLET 36
PRK09706 PRK09706
transcriptional repressor DicA; Reviewed
 3-67 4.06e-05

transcriptional repressor DicA; Reviewed


Pssm-ID: 182039 [Multi-domain]  Cd Length: 135  Bit Score: 40.99  E-value: 4.06e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 502374887   3 FGQQIKDLRKKKGLTQEQFALKLNVTRQAVSNWENDKNLPDLELLILMSSVFSISLDQLILGGTD 67
Cdd:PRK09706   6 LGQRIRYRRKQLKLSQRSLAKAVKVSHVSISQWERDETEPTGKNLFALAKALQCSPTWLLFGDED 70
PRK13355 PRK13355
bifunctional HTH-domain containing protein/aminotransferase; Provisional
 2-73 5.95e-05

bifunctional HTH-domain containing protein/aminotransferase; Provisional


Pssm-ID: 237361 [Multi-domain]  Cd Length: 517  Bit Score: 42.03  E-value: 5.95e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 502374887   2 NFGQQIKDLRKKKGLTQEQFA-----LKLNVTRQAVSNWENDKNLPDLELLILMSSVFSISLDQLILGGTDMNNMTE 73
Cdd:PRK13355   3 TFAERLKQAMKARGLKQEDLVhaaeaRGVKLGKSHISQYVSGKTGPRRDVLPFLAAILGVSEDWLLGGESPADQESD 79
VC1465_fam NF040522
VC1465 family Xer recombination activation factor;
7-40 1.62e-04

VC1465 family Xer recombination activation factor;


Pssm-ID: 439737 [Multi-domain]  Cd Length: 111  Bit Score: 38.97  E-value: 1.62e-04
                         10        20        30
                 ....*....|....*....|....*....|....
gi 502374887   7 IKDLRKKKGLTQEQFALKLNVTRQAVSNWENDKN 40
Cdd:NF040522   1 IKETREKAGLTRQQAAEMLRVSLRTVQNWETGKV 34
VapI COG3093
Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain [Defense ...
 12-59 1.41e-03

Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain [Defense mechanisms];


Pssm-ID: 442327 [Multi-domain]  Cd Length: 87  Bit Score: 35.94  E-value: 1.41e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 502374887  12 KKKGLTQEQFALKLNVTRQAVSNWENDKNLPDLELLILMSSVFSISLD 59
Cdd:COG3093   19 EPLGLSQTELAKALGVSRQRISEILNGKRAITADTALRLARAFGTSAE 66
PRK09943 PRK09943
HTH-type transcriptional regulator PuuR;
4-58 1.69e-03

HTH-type transcriptional regulator PuuR;


Pssm-ID: 182158 [Multi-domain]  Cd Length: 185  Bit Score: 37.08  E-value: 1.69e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 502374887   4 GQQIKDLRKKKGLTQEQFALKLNVTRQAVSNWENDKNLPDLELLILMSSVFSISL 58
Cdd:PRK09943   9 GKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSL 63
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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