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Conserved domains on  [gi|502602220|ref|WP_012839546|]
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DUF3325 domain-containing protein [Comamonas thiooxydans]

Protein Classification

DUF3325 domain-containing protein( domain architecture ID 10570466)

uncharacterized DUF3325 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3325 pfam11804
Protein of unknown function (DUF3325); This family of short proteins are functionally ...
 8-109 3.47e-10

Protein of unknown function (DUF3325); This family of short proteins are functionally uncharacterized. This family is restricted to Alpha-, Beta- and Gamma-proteobacteria.


:

Pssm-ID: 432087  Cd Length: 101  Bit Score: 52.63  E-value: 3.47e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502602220    8 LQAFAFSMGGMTALAFAMDRHYAQLTSlDEVPTAHRMALRVLGALLLLAVCLPAMRGWSAAVGSVLVLGFWSLGALATVA 87
Cdd:pfam11804   1 LAALLLAYAGFAALALAMDRHHEQLFG-RPPPPARRRLLRLAGWLLLALSLALAVAAWGWAVGLVLWLGLLSLAALLLVL 79

                          90       100
                  ....*....|....*....|..
gi 502602220   88 GLSWSARHLAVAAAVTALLGGV 109
Cdd:pfam11804  80 LLAYRPRWLLRLAAAAALLGGL 101
 
Name Accession Description Interval E-value
DUF3325 pfam11804
Protein of unknown function (DUF3325); This family of short proteins are functionally ...
 8-109 3.47e-10

Protein of unknown function (DUF3325); This family of short proteins are functionally uncharacterized. This family is restricted to Alpha-, Beta- and Gamma-proteobacteria.


Pssm-ID: 432087  Cd Length: 101  Bit Score: 52.63  E-value: 3.47e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502602220    8 LQAFAFSMGGMTALAFAMDRHYAQLTSlDEVPTAHRMALRVLGALLLLAVCLPAMRGWSAAVGSVLVLGFWSLGALATVA 87
Cdd:pfam11804   1 LAALLLAYAGFAALALAMDRHHEQLFG-RPPPPARRRLLRLAGWLLLALSLALAVAAWGWAVGLVLWLGLLSLAALLLVL 79

                          90       100
                  ....*....|....*....|..
gi 502602220   88 GLSWSARHLAVAAAVTALLGGV 109
Cdd:pfam11804  80 LLAYRPRWLLRLAAAAALLGGL 101
 
Name Accession Description Interval E-value
DUF3325 pfam11804
Protein of unknown function (DUF3325); This family of short proteins are functionally ...
 8-109 3.47e-10

Protein of unknown function (DUF3325); This family of short proteins are functionally uncharacterized. This family is restricted to Alpha-, Beta- and Gamma-proteobacteria.


Pssm-ID: 432087  Cd Length: 101  Bit Score: 52.63  E-value: 3.47e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502602220    8 LQAFAFSMGGMTALAFAMDRHYAQLTSlDEVPTAHRMALRVLGALLLLAVCLPAMRGWSAAVGSVLVLGFWSLGALATVA 87
Cdd:pfam11804   1 LAALLLAYAGFAALALAMDRHHEQLFG-RPPPPARRRLLRLAGWLLLALSLALAVAAWGWAVGLVLWLGLLSLAALLLVL 79

                          90       100
                  ....*....|....*....|..
gi 502602220   88 GLSWSARHLAVAAAVTALLGGV 109
Cdd:pfam11804  80 LLAYRPRWLLRLAAAAALLGGL 101
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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