|
Name |
Accession |
Description |
Interval |
E-value |
| SecA2_Lm |
NF012136 |
accessory Sec system translocase SecA2; Members of this family are SecA2, part of a Sec-like ... |
1-775 |
0e+00 |
|
accessory Sec system translocase SecA2; Members of this family are SecA2, part of a Sec-like preprotein translocase called accessory Sec. This SecA2 family is characteristic of Listeria species.
Pssm-ID: 333724 Cd Length: 776 Bit Score: 1485.91 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 1 MKQNFDDRKIVKQYREIARQIVKKEGLYKNMDQNELCEQTNYWREKFKTKPMTDRDKINIFALAREAASRIIGLDAVVVQ 80
Cdd:NF012136 1 MAQSYDDRKIVKAYREIARQIVKKEGLYRNMDQAELCEQTQIWREKFKTKEMTERDKINIFALVREAARRIIGLEAVMVQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 81 LIGALVLGDGKVAEMKTGEGKTLMSLFVMFIEVMRGNRVHLVTANEYLARRDREEIGQVLEYLGVSVALNESGLDKAQKK 160
Cdd:NF012136 81 LIGALVLGDGKIAEMKTGEGKTLVSLFVMYIEVLRGNRVHLVTANEYLAKRDREEIGQVLEYLGVSVALNESGLDKEQKK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 161 AIYTADVIYGTASEFGFDYLRDNMVRQKEDKVQSGLDFVLIDEADSILIDEARTPLLISDRKEEDLSLYQTANKLVKTMM 240
Cdd:NF012136 161 AIYTADVIYGTASEFGFDYLRDNMVRQTEDKVQTGLDFVLIDEADSILIDEARTPLLISDRKEEDLSLYQVANKLVKTML 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 241 KDDYEMEEHKRFVWLNDAGIEKAQKFWGVESLYSAEAQSELRITMLLMRAHFLMHKDKDYVVLDDEVLIIDPHTGRALPG 320
Cdd:NF012136 241 KDDYEVEEHKRFVWLNDAGIEKAQRFWGVDSLYSEEAQPLLRITMLLLRAHFLMHKDKDYVVLDDEVLIIDPHTGRALPG 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 321 RRFNDGLHQAIEAKEEVEVNEESRTLATITIQNYFRMYKKISGMTGTAKTEEEEFRQIYNMDVVVIPTNLRINREDVPDD 400
Cdd:NF012136 321 RRFNDGLHQAIEAKEGVEVREESRTLATITIQNYFRMYKKISGMTGTAKTEEEEFRQIYNMDVVVIPTNLRVNREDMPDD 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 401 IFYTKKEKGRAIVYEVSWRYEKGQPTLIGTSSIKSNEWISGLLDAAGIPHQVLNAKNHAQEAEIIAKAGKRGMVTLATNM 480
Cdd:NF012136 401 VFYTKKEKGRAIVYEVSWRYEKGQPTLIGTSSIKSNEWISELLTKAGIPHQVLNAKNHAQEAEIIARAGKRGMVTLATNM 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 481 AGRGTDIKLDLDVHKLGGLAVIGTERHESRRIDLQLMGRSGRRGDPGFSKFMISLEDDLLEQFESKSWEKLSVKLKRKAP 560
Cdd:NF012136 481 AGRGTDIKLDKDVHKLGGLAVIGTERHESRRIDLQLMGRSGRRGDPGFSKFMISLEDDLLEQFDSKRWEKYRRKLKRKAP 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 561 RDGKPVNSSKIHAVVVNAQKRLEGANYDIRKDLLSYDEVIDLQRKMVYKERDKLLERNKLGVSSEKILREVAEYAFIHTE 640
Cdd:NF012136 561 RDGKPVNSRKIHQLVVEAQKRLEGANYDIRKDLLSYDEVIDLQRKMVYKERDRLLGRDKLGVSSEKILREVAEDVFSERE 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 641 VDPE-KMDKYYARQKEFLGGTKFPISFDEVSLMEPTEVVEKIVAWHKQERDKFPLETITAIEKEVYLNLMDQMWVMHLDA 719
Cdd:NF012136 641 DDQDeRMEKYYKRQKELLGGTKFPYSFDQVTLMDPREVVEKLIFWHKKQRAKFPAETINAIEKEVYLNLMDQMWVMHLDQ 720
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*.
gi 502749986 720 MVQLREGIHLRAYGQQDPLVMYQKEGAQLFEKFQADYHFYFAHALLELDPDGLVQG 775
Cdd:NF012136 721 MVQLREGIHLRAYGQQDPLVMYQKEGAELFEKFQDDYHFYFAHALLELDPEGLVMG 776
|
|
| PRK09200 |
PRK09200 |
preprotein translocase subunit SecA; Reviewed |
1-775 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 236408 [Multi-domain] Cd Length: 790 Bit Score: 1098.83 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 1 MKQNFDDRKIVKQYREIARQIVKKEGLYKNMDQNELCEQTNYWREKFKTKPMTDRDKINIFALAREAASRIIGLDAVVVQ 80
Cdd:PRK09200 4 KLLGDIDKRRLKKYRKIVKQINKLEGKMSSLSDEELRQKTIEFKERLASGKTLDDILPEAFAVVREAAKRVLGMRPYDVQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 81 LIGALVLGDGKVAEMKTGEGKTLMSLFVMFIEVMRGNRVHLVTANEYLARRDREEIGQVLEYLGVSVALNESGLDKA-QK 159
Cdd:PRK09200 84 LIGALVLHEGNIAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDAsEK 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 160 KAIYTADVIYGTASEFGFDYLRDNMVRQKEDKVQSGLDFVLIDEADSILIDEARTPLLISDRKEEDLSLYQTANKLVKTM 239
Cdd:PRK09200 164 KAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRVQSNLYHIAAKFVKTL 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 240 MKD-DYEMEEHKRFVWLNDAGIEKAQKFWGVESLYSAEAQSELRITMLLMRAHFLMHKDKDYVVLDDEVLIIDPHTGRAL 318
Cdd:PRK09200 244 EEDvDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYIVYDGEIVLVDRFTGRVL 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 319 PGRRFNDGLHQAIEAKEEVEVNEESRTLATITIQNYFRMYKKISGMTGTAKTEEEEFRQIYNMDVVVIPTNLRINREDVP 398
Cdd:PRK09200 324 PGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYNMEVVQIPTNRPIIRIDYP 403
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 399 DDIFYTKKEKGRAIVYEVSWRYEKGQPTLIGTSSIKSNEWISGLLDAAGIPHQVLNAKNHAQEAEIIAKAGKRGMVTLAT 478
Cdd:PRK09200 404 DKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKGAVTVAT 483
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 479 NMAGRGTDIKLDLDVHKLGGLAVIGTERHESRRIDLQLMGRSGRRGDPGFSKFMISLEDDLLEQFESKSWEKLSVKLKRK 558
Cdd:PRK09200 484 NMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDDLLKRFAPEELEKLKKKLKTD 563
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 559 APRDGKPVNSSKIHAVVVNAQKRLEGANYDIRKDLLSYDEVIDLQRKMVYKERDKLLERNKLGVSS------EKILREVA 632
Cdd:PRK09200 564 AQRLTGLLFNRKVHKIVVKAQRISEGAGYSAREYALELDDVINIQRDVVYKERNRLLEEDDRDLIDivilmiDVYLEAVA 643
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 633 EYAFIHtEVDPEK--MDKYYARQKEFLGGTKFPisfdeVSLMEPTEVVEKIVAWHKQERDKFPLET-ITAIEKEVYLNLM 709
Cdd:PRK09200 644 EEYLLE-KSLLEEwiYENLSFQLNEILSNTNFP-----DKKEVVQFLLEEAEKQLKEKRNKLPSATlYNQFLRKVALKAI 717
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 710 DQMWVMHLDAMVQLREGIHLRAYGQQDPLVMYQKEGAQLFE----KFQADYHFYFAHALLELDPDGLVQG 775
Cdd:PRK09200 718 DQNWVEQVDALQQLKEGIGLRQYGQRNPIREYQKEALESFEymyeNIKKDMVRNLLLSLLVFDKEGEIVI 787
|
|
| SecA |
COG0653 |
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, ... |
9-750 |
0e+00 |
|
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440418 [Multi-domain] Cd Length: 876 Bit Score: 893.62 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 9 KIVKQYREIARQIVKKEGLYKNMDQNELCEQTNYWREKFKTKPMTDrdkiNI----FALAREAASRIIGLDAVVVQLIGA 84
Cdd:COG0653 15 RELKRLRKIVDKINALEPEMEALSDEELRAKTDEFKERLANGETLD----DLlpeaFAVVREASKRVLGMRHFDVQLIGG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 85 LVLGDGKVAEMKTGEGKTLMSLFVMFIEVMRGNRVHLVTANEYLARRDREEIGQVLEYLGVSVALNESGLDKAQKKAIYT 164
Cdd:COG0653 91 IVLHQGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGRLYRFLGLSVGVIVHGMDPEERRAAYA 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 165 ADVIYGTASEFGFDYLRDNMVRQKEDKVQSGLDFVLIDEADSILIDEARTPLLISDRKEEDLSLYQTANKLVKTMMKD-D 243
Cdd:COG0653 171 ADITYGTNNEFGFDYLRDNMVFSLEDMVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSTDLYYRINKLVPRLKRDgD 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 244 YEMEEHKRFVWLNDAGIEKAQKFWGVESLYSAEAqselriTMLL------MRAHFLMHKDKDYVVLDDEVLIIDPHTGRA 317
Cdd:COG0653 251 YTVDEKARTVTLTEEGIEKVEKLLGIDNLYDPEN------IELVhhlnqaLRAHALFKRDVDYIVKDGEVVIVDEFTGRL 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 318 LPGRRFNDGLHQAIEAKEEVEVNEESRTLATITIQNYFRMYKKISGMTGTAKTEEEEFRQIYNMDVVVIPTNLRINREDV 397
Cdd:COG0653 325 MPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYGLDVVVIPTNRPMIRKDE 404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 398 PDDIFYTKKEKGRAIVYEVSWRYEKGQPTLIGTSSIKSNEWISGLLDAAGIPHQVLNAKNHAQEAEIIAKAGKRGMVTLA 477
Cdd:COG0653 405 PDLVYKTEEEKFNAVVEDIKERHEKGQPVLVGTTSIEKSELLSKLLKKEGIPHNVLNAKQHEREAEIVAQAGRPGAVTIA 484
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 478 TNMAGRGTDIKLDLD---------------------------------VHKLGGLAVIGTERHESRRIDLQLMGRSGRRG 524
Cdd:COG0653 485 TNMAGRGTDIVLGGNpeflaaaeladrgleweeaiakikaewqaeheeVLEAGGLHVIGTERHESRRIDNQLRGRSGRQG 564
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 525 DPGFSKFMISLEDDLLEQFESkswEKLSVKLKRKAPRDGKPVNSSKIHAVVVNAQKRLEGANYDIRKDLLSYDEVIDLQR 604
Cdd:COG0653 565 DPGSSRFYLSLEDDLMRIFGS---DRIKGMMDKLGMEEGEPIEHKMVSKAIENAQKKVEGRNFDIRKNLLEYDDVMNDQR 641
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 605 KMVYKERDKLLERNKLGVSSEKILREVAE---YAFIHTEVDPEKMDkyYARQKEFLG---GTKFPIS-FDEVSLMEPTEV 677
Cdd:COG0653 642 KVIYEQRREILEGEDLSETILDMREDVIEdlvDEYIPEGSYPEQWD--LEGLEEALKelfGLDLPIEeWLDEEGLDEEEL 719
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 502749986 678 VEKIV-----AWHKQErDKFPLETITAIEKEVYLNLMDQMWVMHLDAMVQLREGIHLRAYGQQDPLVMYQKEGAQLFE 750
Cdd:COG0653 720 RERLLeaadeAYEEKE-EELGPEVMRELERVVLLQVLDRKWREHLDAMDHLRQGIGLRGYAQKDPLVEYKREAFELFE 796
|
|
| secA |
TIGR00963 |
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are ... |
25-750 |
0e+00 |
|
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. This model excludes SecA2 of the accessory secretory system. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273366 [Multi-domain] Cd Length: 742 Bit Score: 824.58 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 25 EGLYKNMDQNELCEQTNYWREKFKTKPMTdRDKI--NIFALAREAASRIIGLDAVVVQLIGALVLGDGKVAEMKTGEGKT 102
Cdd:TIGR00963 5 EEDYEKLSDEELRNKTNEFKDRLAKQGET-LDDLlpEAFAVVREASKRVLGMRPFDVQLIGGIALHKGKIAEMKTGEGKT 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 103 LMSLFVMFIEVMRGNRVHLVTANEYLARRDREEIGQVLEYLGVSVALNESGLDKAQKKAIYTADVIYGTASEFGFDYLRD 182
Cdd:TIGR00963 84 LTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYACDITYGTNNELGFDYLRD 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 183 NMVRQKEDKVQSGLDFVLIDEADSILIDEARTPLLISDRKEEDLSLYQTANKLVKTMMKD-DYEMEEHKRFVWLNDAGIE 261
Cdd:TIGR00963 164 NMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKSTELYVQANKFAKALEKEvDYEVDEKNRAVLLTEQGMK 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 262 KAQKFWGVESLYSAEAQSELRITMLLMRAHFLMHKDKDYVVLDDEVLIIDPHTGRALPGRRFNDGLHQAIEAKEEVEVNE 341
Cdd:TIGR00963 244 KAEDLLGVDNLYDLENSPLIHYINNALKAKELFQKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQN 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 342 ESRTLATITIQNYFRMYKKISGMTGTAKTEEEEFRQIYNMDVVVIPTNLRINREDVPDDIFYTKKEKGRAIVYEVSWRYE 421
Cdd:TIGR00963 324 ENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFRKIYNLEVVVVPTNRPVIRKDRPDLVYKTEEEKWKAVVEEIKERHA 403
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 422 KGQPTLIGTSSIKSNEWISGLLDAAGIPHQVLNAKNHAQEAEIIAKAGKRGMVTLATNMAGRGTDIKLDlDVHKLGGLAV 501
Cdd:TIGR00963 404 KGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAKNHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLE-EVKELGGLYV 482
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 502 IGTERHESRRIDLQLMGRSGRRGDPGFSKFMISLEDDLLEQFESkswEKLSVKLKRKAPRDGKPVNSSKIHAVVVNAQKR 581
Cdd:TIGR00963 483 IGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNLMRIFGG---DRLEGLMRRLGMDDDEPIESKMVSRALESAQKR 559
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 582 LEGANYDIRKDLLSYDEVIDLQRKMVYKERDKLLERNKLgvsSEKILrEVAEYaFIHTEVDpekmdkYYARQKEFLGGTK 661
Cdd:TIGR00963 560 VEGRNFDIRKQLLEYDDVLNKQREVIYAERRRVLESEDL---SELIL-QMLES-TLDRIVD------AYINEEKLSEEWD 628
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 662 FPISFDEVSLMEPTE-------------------VVEKIVAWHKQERDKFPLETITAIEKEVYLNLMDQMWVMHLDAMVQ 722
Cdd:TIGR00963 629 LEGLIEKLKTLFLLDgdltpedlenltsedlkelLLEKIRAAYDEKEEQLESERMREFERYVLLQSIDRKWKEHLDAMDL 708
|
730 740
....*....|....*....|....*...
gi 502749986 723 LREGIHLRAYGQQDPLVMYQKEGAQLFE 750
Cdd:TIGR00963 709 LREGIGLRSYGQKDPLIEYKNEGFNLFE 736
|
|
| SecA_DEAD |
pfam07517 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
1-376 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the pfam00270.
Pssm-ID: 462190 [Multi-domain] Cd Length: 379 Bit Score: 551.72 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 1 MKQNFDDR--KIVKQYREIARQIVKKEGLYKNMDQNELCEQTNYWREKFKTKPMTDRDKINIFALAREAASRIIGLDAVV 78
Cdd:pfam07517 1 LKKIFGSPneRDLKRLRKIVDQINALEEELKALSDEELRAKTDELRERLREGESLDDILPEAFALVREAAKRVLGMRHYD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 79 VQLIGALVLGDGKVAEMKTGEGKTLMSLFVMFIEVMRGNRVHLVTANEYLARRDREEIGQVLEYLGVSVALNESGLDKAQ 158
Cdd:pfam07517 81 VQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVITSDMDPEE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 159 KKAIYTADVIYGTASEFGFDYLRDNMVRQKEDKVQSGLDFVLIDEADSILIDEARTPLLISDRKEEDLSLYQTANKLVKT 238
Cdd:pfam07517 161 RRAAYNADITYGTNNELGFDYLRDNMATSKEDKVQRGLNFAIVDEVDSILIDEARTPLIISGPSEDDSELYREADRLVKS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 239 MMKD-DYEMEEHKRFVWLNDAGIEKAQKFWGVESLYSAEAQSELRITMLLMRAHFLMHKDKDYVVLDDEVLIIDPHTGRA 317
Cdd:pfam07517 241 LEEDgDYEIDEKSKNVELTEKGIEKIEKLLGIDNLYDPENVELLHHINQALKAHHLFKRDVDYIVRDGEVVIVDEFTGRV 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 502749986 318 LPGRRFNDGLHQAIEAKEEVEVNEESRTLATITIQNYFRMYKKISGMTGTAKTEEEEFR 376
Cdd:pfam07517 321 MPGRRWSDGLHQAIEAKEGVEITPESQTLASITYQNFFRLYPKLSGMTGTAKTEAEEFR 379
|
|
| SecA_DEAD |
smart00957 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
1-376 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the.
Pssm-ID: 214937 [Multi-domain] Cd Length: 380 Bit Score: 551.26 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 1 MKQNFDDR--KIVKQYREIARQIVKKEGLYKNMDQNELCEQTNYWREKFKTKPMTDRDKINIFALAREAASRIIGLDAVV 78
Cdd:smart00957 1 LKKLFGSKndRELKRLRKIVDQINALEPEMEALSDEELRAKTAEFKERLAEGESLDDLLPEAFAVVREAAKRVLGMRHFD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 79 VQLIGALVLGDGKVAEMKTGEGKTLMSLFVMFIEVMRGNRVHLVTANEYLARRDREEIGQVLEYLGVSVALNESGLDKAQ 158
Cdd:smart00957 81 VQLIGGIVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVIVSGMSPEE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 159 KKAIYTADVIYGTASEFGFDYLRDNMVRQKEDKVQSGLDFVLIDEADSILIDEARTPLLIS-DRKEEDLSLYQTANKLVK 237
Cdd:smart00957 161 RRAAYAADITYGTNNEFGFDYLRDNMAFSKEDKVQRGLNYAIVDEVDSILIDEARTPLIISgPAEDESSDLYHRADKFVP 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 238 TMMKD-DYEMEEHKRFVWLNDAGIEKAQKFWGVESLYSAEAQSELRITMLLMRAHFLMHKDKDYVVLDDEVLIIDPHTGR 316
Cdd:smart00957 241 RLKEDeDYTVDEKSRTVELTEEGIEKAEKLLGIDNLYDPENIELLHHVNQALRAHYLFKRDVDYIVRDGEVVIVDEFTGR 320
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 317 ALPGRRFNDGLHQAIEAKEEVEVNEESRTLATITIQNYFRMYKKISGMTGTAKTEEEEFR 376
Cdd:smart00957 321 VMEGRRYSDGLHQAIEAKEGVEIQEENQTLATITFQNYFRMYKKLSGMTGTAKTEAEEFR 380
|
|
| DEXDc_SecA |
cd17928 |
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the ... |
35-388 |
1.44e-108 |
|
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the vast majority of bacterial and ER-exported proteins. SecA binds both the signal sequence and the mature domain of the preprotein emerging from the ribosome. SecA belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350686 [Multi-domain] Cd Length: 230 Bit Score: 330.65 E-value: 1.44e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 35 ELCEQTNYWREKFKTKPMTDRDKINIFALAREAASRIIGLDAVVVQLIGALVLGDGKVAEMKTGEGKTLMSLFVMFIEVM 114
Cdd:cd17928 1 ELRAKTDELRERLAKGETLDDLLPEAFALVREAARRVLGMRPFDVQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 115 RGNRVHLVTANEYLARRDREEIGQVLEYLGVSVALNESGLDKAQKKAIYTADVIYGTASEFGFDYLRDNMVRQKEDKVQS 194
Cdd:cd17928 81 TGKGVHVVTVNDYLARRDAEWMGPLYEFLGLTVGVILSDMSPDERREAYAADITYGTNNELGFDYLRDNMVTSKEDLVQR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 195 GLDFVLIDEADSILIDEARTPLLIsdrkeedlslyqtanklvktmmkddyemeehkrfvwlndagiekaqkfwgveslys 274
Cdd:cd17928 161 GLNFAIVDEVDSILIDEARTPLII-------------------------------------------------------- 184
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 275 aeaqselritmllmrahflmhkdkdyvvlddevliidphtgralpgrrfndglhqaieakeevevneeSRTLATITIQNY 354
Cdd:cd17928 185 --------------------------------------------------------------------SGTLATITFQNY 196
|
330 340 350
....*....|....*....|....*....|....
gi 502749986 355 FRMYKKISGMTGTAKTEEEEFRQIYNMDVVVIPT 388
Cdd:cd17928 197 FRLYPKLAGMTGTAKTEAEEFREIYNLDVVVIPT 230
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| SecA2_Lm |
NF012136 |
accessory Sec system translocase SecA2; Members of this family are SecA2, part of a Sec-like ... |
1-775 |
0e+00 |
|
accessory Sec system translocase SecA2; Members of this family are SecA2, part of a Sec-like preprotein translocase called accessory Sec. This SecA2 family is characteristic of Listeria species.
Pssm-ID: 333724 Cd Length: 776 Bit Score: 1485.91 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 1 MKQNFDDRKIVKQYREIARQIVKKEGLYKNMDQNELCEQTNYWREKFKTKPMTDRDKINIFALAREAASRIIGLDAVVVQ 80
Cdd:NF012136 1 MAQSYDDRKIVKAYREIARQIVKKEGLYRNMDQAELCEQTQIWREKFKTKEMTERDKINIFALVREAARRIIGLEAVMVQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 81 LIGALVLGDGKVAEMKTGEGKTLMSLFVMFIEVMRGNRVHLVTANEYLARRDREEIGQVLEYLGVSVALNESGLDKAQKK 160
Cdd:NF012136 81 LIGALVLGDGKIAEMKTGEGKTLVSLFVMYIEVLRGNRVHLVTANEYLAKRDREEIGQVLEYLGVSVALNESGLDKEQKK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 161 AIYTADVIYGTASEFGFDYLRDNMVRQKEDKVQSGLDFVLIDEADSILIDEARTPLLISDRKEEDLSLYQTANKLVKTMM 240
Cdd:NF012136 161 AIYTADVIYGTASEFGFDYLRDNMVRQTEDKVQTGLDFVLIDEADSILIDEARTPLLISDRKEEDLSLYQVANKLVKTML 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 241 KDDYEMEEHKRFVWLNDAGIEKAQKFWGVESLYSAEAQSELRITMLLMRAHFLMHKDKDYVVLDDEVLIIDPHTGRALPG 320
Cdd:NF012136 241 KDDYEVEEHKRFVWLNDAGIEKAQRFWGVDSLYSEEAQPLLRITMLLLRAHFLMHKDKDYVVLDDEVLIIDPHTGRALPG 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 321 RRFNDGLHQAIEAKEEVEVNEESRTLATITIQNYFRMYKKISGMTGTAKTEEEEFRQIYNMDVVVIPTNLRINREDVPDD 400
Cdd:NF012136 321 RRFNDGLHQAIEAKEGVEVREESRTLATITIQNYFRMYKKISGMTGTAKTEEEEFRQIYNMDVVVIPTNLRVNREDMPDD 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 401 IFYTKKEKGRAIVYEVSWRYEKGQPTLIGTSSIKSNEWISGLLDAAGIPHQVLNAKNHAQEAEIIAKAGKRGMVTLATNM 480
Cdd:NF012136 401 VFYTKKEKGRAIVYEVSWRYEKGQPTLIGTSSIKSNEWISELLTKAGIPHQVLNAKNHAQEAEIIARAGKRGMVTLATNM 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 481 AGRGTDIKLDLDVHKLGGLAVIGTERHESRRIDLQLMGRSGRRGDPGFSKFMISLEDDLLEQFESKSWEKLSVKLKRKAP 560
Cdd:NF012136 481 AGRGTDIKLDKDVHKLGGLAVIGTERHESRRIDLQLMGRSGRRGDPGFSKFMISLEDDLLEQFDSKRWEKYRRKLKRKAP 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 561 RDGKPVNSSKIHAVVVNAQKRLEGANYDIRKDLLSYDEVIDLQRKMVYKERDKLLERNKLGVSSEKILREVAEYAFIHTE 640
Cdd:NF012136 561 RDGKPVNSRKIHQLVVEAQKRLEGANYDIRKDLLSYDEVIDLQRKMVYKERDRLLGRDKLGVSSEKILREVAEDVFSERE 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 641 VDPE-KMDKYYARQKEFLGGTKFPISFDEVSLMEPTEVVEKIVAWHKQERDKFPLETITAIEKEVYLNLMDQMWVMHLDA 719
Cdd:NF012136 641 DDQDeRMEKYYKRQKELLGGTKFPYSFDQVTLMDPREVVEKLIFWHKKQRAKFPAETINAIEKEVYLNLMDQMWVMHLDQ 720
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*.
gi 502749986 720 MVQLREGIHLRAYGQQDPLVMYQKEGAQLFEKFQADYHFYFAHALLELDPDGLVQG 775
Cdd:NF012136 721 MVQLREGIHLRAYGQQDPLVMYQKEGAELFEKFQDDYHFYFAHALLELDPEGLVMG 776
|
|
| PRK09200 |
PRK09200 |
preprotein translocase subunit SecA; Reviewed |
1-775 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 236408 [Multi-domain] Cd Length: 790 Bit Score: 1098.83 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 1 MKQNFDDRKIVKQYREIARQIVKKEGLYKNMDQNELCEQTNYWREKFKTKPMTDRDKINIFALAREAASRIIGLDAVVVQ 80
Cdd:PRK09200 4 KLLGDIDKRRLKKYRKIVKQINKLEGKMSSLSDEELRQKTIEFKERLASGKTLDDILPEAFAVVREAAKRVLGMRPYDVQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 81 LIGALVLGDGKVAEMKTGEGKTLMSLFVMFIEVMRGNRVHLVTANEYLARRDREEIGQVLEYLGVSVALNESGLDKA-QK 159
Cdd:PRK09200 84 LIGALVLHEGNIAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDAsEK 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 160 KAIYTADVIYGTASEFGFDYLRDNMVRQKEDKVQSGLDFVLIDEADSILIDEARTPLLISDRKEEDLSLYQTANKLVKTM 239
Cdd:PRK09200 164 KAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRVQSNLYHIAAKFVKTL 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 240 MKD-DYEMEEHKRFVWLNDAGIEKAQKFWGVESLYSAEAQSELRITMLLMRAHFLMHKDKDYVVLDDEVLIIDPHTGRAL 318
Cdd:PRK09200 244 EEDvDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYIVYDGEIVLVDRFTGRVL 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 319 PGRRFNDGLHQAIEAKEEVEVNEESRTLATITIQNYFRMYKKISGMTGTAKTEEEEFRQIYNMDVVVIPTNLRINREDVP 398
Cdd:PRK09200 324 PGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYNMEVVQIPTNRPIIRIDYP 403
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 399 DDIFYTKKEKGRAIVYEVSWRYEKGQPTLIGTSSIKSNEWISGLLDAAGIPHQVLNAKNHAQEAEIIAKAGKRGMVTLAT 478
Cdd:PRK09200 404 DKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKGAVTVAT 483
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 479 NMAGRGTDIKLDLDVHKLGGLAVIGTERHESRRIDLQLMGRSGRRGDPGFSKFMISLEDDLLEQFESKSWEKLSVKLKRK 558
Cdd:PRK09200 484 NMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDDLLKRFAPEELEKLKKKLKTD 563
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 559 APRDGKPVNSSKIHAVVVNAQKRLEGANYDIRKDLLSYDEVIDLQRKMVYKERDKLLERNKLGVSS------EKILREVA 632
Cdd:PRK09200 564 AQRLTGLLFNRKVHKIVVKAQRISEGAGYSAREYALELDDVINIQRDVVYKERNRLLEEDDRDLIDivilmiDVYLEAVA 643
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 633 EYAFIHtEVDPEK--MDKYYARQKEFLGGTKFPisfdeVSLMEPTEVVEKIVAWHKQERDKFPLET-ITAIEKEVYLNLM 709
Cdd:PRK09200 644 EEYLLE-KSLLEEwiYENLSFQLNEILSNTNFP-----DKKEVVQFLLEEAEKQLKEKRNKLPSATlYNQFLRKVALKAI 717
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 710 DQMWVMHLDAMVQLREGIHLRAYGQQDPLVMYQKEGAQLFE----KFQADYHFYFAHALLELDPDGLVQG 775
Cdd:PRK09200 718 DQNWVEQVDALQQLKEGIGLRQYGQRNPIREYQKEALESFEymyeNIKKDMVRNLLLSLLVFDKEGEIVI 787
|
|
| PRK12904 |
PRK12904 |
preprotein translocase subunit SecA; Reviewed |
9-751 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237259 [Multi-domain] Cd Length: 830 Bit Score: 907.15 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 9 KIVKQYREIARQIVKKEGLYKNMDQNELCEQTNYWREKFKTKpmTDRDKI--NIFALAREAASRIIGLDAVVVQLIGALV 86
Cdd:PRK12904 15 RELKRLRKIVDKINALEPEMEKLSDEELKAKTAEFKERLAKG--ETLDDLlpEAFAVVREASKRVLGMRHFDVQLIGGMV 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 87 LGDGKVAEMKTGEGKTLMSLFVMFIEVMRGNRVHLVTANEYLARRDREEIGQVLEYLGVSVALNESGLDKAQKKAIYTAD 166
Cdd:PRK12904 93 LHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPEERREAYAAD 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 167 VIYGTASEFGFDYLRDNMVRQKEDKVQSGLDFVLIDEADSILIDEARTPLLISDRKEEDLSLYQTANKLVKTMMKD-DYE 245
Cdd:PRK12904 173 ITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSSELYKRANKIVPTLEKEgDYT 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 246 MEEHKRFVWLNDAGIEKAQKFWGVESLYSAEAqselriTMLL------MRAHFLMHKDKDYVVLDDEVLIIDPHTGRALP 319
Cdd:PRK12904 253 VDEKSRTVGLTEEGIEKAEKLLGIENLYDPEN------IALVhhlnqaLRAHELFKRDVDYIVKDGEVVIVDEFTGRLMP 326
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 320 GRRFNDGLHQAIEAKEEVEVNEESRTLATITIQNYFRMYKKISGMTGTAKTEEEEFRQIYNMDVVVIPTNLRINREDVPD 399
Cdd:PRK12904 327 GRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLDVVVIPTNRPMIRIDHPD 406
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 400 DIFYTKKEKGRAIVYEVSWRYEKGQPTLIGTSSIKSNEWISGLLDAAGIPHQVLNAKNHAQEAEIIAKAGKRGMVTLATN 479
Cdd:PRK12904 407 LIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAKNHEREAEIIAQAGRPGAVTIATN 486
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 480 MAGRGTDIKLDLD------------------------------VHKLGGLAVIGTERHESRRIDLQLMGRSGRRGDPGFS 529
Cdd:PRK12904 487 MAGRGTDIKLGGNpemlaaalleeeteeqiakikaewqeeheeVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSS 566
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 530 KFMISLEDDLLEQFESkswEKLSVKLKRKAPRDGKPVNSSKIHAVVVNAQKRLEGANYDIRKDLLSYDEVIDLQRKMVYK 609
Cdd:PRK12904 567 RFYLSLEDDLMRIFGS---DRVKGMMDRLGMKEGEAIEHKMVTRAIENAQKKVEGRNFDIRKQLLEYDDVMNDQRKVIYA 643
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 610 ERDKLLERNKLGVSSEKILREVAE---YAFIHTEVDPEKMDkyYARQKEFLgGTKFPISFDEVSLME----PTEVVEKIV 682
Cdd:PRK12904 644 QRNEILEGEDLSETILDMREDVIEdlvDAYIPPGSYEEDWD--LEGLEEAL-KTDFGLELPIEEWLEegldEEELRERIL 720
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 502749986 683 -----AWHKQErDKFPLETITAIEKEVYLNLMDQMWVMHLDAMVQLREGIHLRAYGQQDPLVMYQKEGAQLFEK 751
Cdd:PRK12904 721 eaaeeAYEEKE-EELGEEQMREFERVVMLQVLDTKWREHLAAMDHLRQGIGLRGYAQKDPLQEYKREGFELFEE 793
|
|
| SecA |
COG0653 |
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, ... |
9-750 |
0e+00 |
|
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440418 [Multi-domain] Cd Length: 876 Bit Score: 893.62 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 9 KIVKQYREIARQIVKKEGLYKNMDQNELCEQTNYWREKFKTKPMTDrdkiNI----FALAREAASRIIGLDAVVVQLIGA 84
Cdd:COG0653 15 RELKRLRKIVDKINALEPEMEALSDEELRAKTDEFKERLANGETLD----DLlpeaFAVVREASKRVLGMRHFDVQLIGG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 85 LVLGDGKVAEMKTGEGKTLMSLFVMFIEVMRGNRVHLVTANEYLARRDREEIGQVLEYLGVSVALNESGLDKAQKKAIYT 164
Cdd:COG0653 91 IVLHQGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGRLYRFLGLSVGVIVHGMDPEERRAAYA 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 165 ADVIYGTASEFGFDYLRDNMVRQKEDKVQSGLDFVLIDEADSILIDEARTPLLISDRKEEDLSLYQTANKLVKTMMKD-D 243
Cdd:COG0653 171 ADITYGTNNEFGFDYLRDNMVFSLEDMVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSTDLYYRINKLVPRLKRDgD 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 244 YEMEEHKRFVWLNDAGIEKAQKFWGVESLYSAEAqselriTMLL------MRAHFLMHKDKDYVVLDDEVLIIDPHTGRA 317
Cdd:COG0653 251 YTVDEKARTVTLTEEGIEKVEKLLGIDNLYDPEN------IELVhhlnqaLRAHALFKRDVDYIVKDGEVVIVDEFTGRL 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 318 LPGRRFNDGLHQAIEAKEEVEVNEESRTLATITIQNYFRMYKKISGMTGTAKTEEEEFRQIYNMDVVVIPTNLRINREDV 397
Cdd:COG0653 325 MPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYGLDVVVIPTNRPMIRKDE 404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 398 PDDIFYTKKEKGRAIVYEVSWRYEKGQPTLIGTSSIKSNEWISGLLDAAGIPHQVLNAKNHAQEAEIIAKAGKRGMVTLA 477
Cdd:COG0653 405 PDLVYKTEEEKFNAVVEDIKERHEKGQPVLVGTTSIEKSELLSKLLKKEGIPHNVLNAKQHEREAEIVAQAGRPGAVTIA 484
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 478 TNMAGRGTDIKLDLD---------------------------------VHKLGGLAVIGTERHESRRIDLQLMGRSGRRG 524
Cdd:COG0653 485 TNMAGRGTDIVLGGNpeflaaaeladrgleweeaiakikaewqaeheeVLEAGGLHVIGTERHESRRIDNQLRGRSGRQG 564
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 525 DPGFSKFMISLEDDLLEQFESkswEKLSVKLKRKAPRDGKPVNSSKIHAVVVNAQKRLEGANYDIRKDLLSYDEVIDLQR 604
Cdd:COG0653 565 DPGSSRFYLSLEDDLMRIFGS---DRIKGMMDKLGMEEGEPIEHKMVSKAIENAQKKVEGRNFDIRKNLLEYDDVMNDQR 641
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 605 KMVYKERDKLLERNKLGVSSEKILREVAE---YAFIHTEVDPEKMDkyYARQKEFLG---GTKFPIS-FDEVSLMEPTEV 677
Cdd:COG0653 642 KVIYEQRREILEGEDLSETILDMREDVIEdlvDEYIPEGSYPEQWD--LEGLEEALKelfGLDLPIEeWLDEEGLDEEEL 719
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 502749986 678 VEKIV-----AWHKQErDKFPLETITAIEKEVYLNLMDQMWVMHLDAMVQLREGIHLRAYGQQDPLVMYQKEGAQLFE 750
Cdd:COG0653 720 RERLLeaadeAYEEKE-EELGPEVMRELERVVLLQVLDRKWREHLDAMDHLRQGIGLRGYAQKDPLVEYKREAFELFE 796
|
|
| secA |
TIGR00963 |
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are ... |
25-750 |
0e+00 |
|
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. This model excludes SecA2 of the accessory secretory system. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273366 [Multi-domain] Cd Length: 742 Bit Score: 824.58 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 25 EGLYKNMDQNELCEQTNYWREKFKTKPMTdRDKI--NIFALAREAASRIIGLDAVVVQLIGALVLGDGKVAEMKTGEGKT 102
Cdd:TIGR00963 5 EEDYEKLSDEELRNKTNEFKDRLAKQGET-LDDLlpEAFAVVREASKRVLGMRPFDVQLIGGIALHKGKIAEMKTGEGKT 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 103 LMSLFVMFIEVMRGNRVHLVTANEYLARRDREEIGQVLEYLGVSVALNESGLDKAQKKAIYTADVIYGTASEFGFDYLRD 182
Cdd:TIGR00963 84 LTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYACDITYGTNNELGFDYLRD 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 183 NMVRQKEDKVQSGLDFVLIDEADSILIDEARTPLLISDRKEEDLSLYQTANKLVKTMMKD-DYEMEEHKRFVWLNDAGIE 261
Cdd:TIGR00963 164 NMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKSTELYVQANKFAKALEKEvDYEVDEKNRAVLLTEQGMK 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 262 KAQKFWGVESLYSAEAQSELRITMLLMRAHFLMHKDKDYVVLDDEVLIIDPHTGRALPGRRFNDGLHQAIEAKEEVEVNE 341
Cdd:TIGR00963 244 KAEDLLGVDNLYDLENSPLIHYINNALKAKELFQKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQN 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 342 ESRTLATITIQNYFRMYKKISGMTGTAKTEEEEFRQIYNMDVVVIPTNLRINREDVPDDIFYTKKEKGRAIVYEVSWRYE 421
Cdd:TIGR00963 324 ENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFRKIYNLEVVVVPTNRPVIRKDRPDLVYKTEEEKWKAVVEEIKERHA 403
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 422 KGQPTLIGTSSIKSNEWISGLLDAAGIPHQVLNAKNHAQEAEIIAKAGKRGMVTLATNMAGRGTDIKLDlDVHKLGGLAV 501
Cdd:TIGR00963 404 KGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAKNHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLE-EVKELGGLYV 482
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 502 IGTERHESRRIDLQLMGRSGRRGDPGFSKFMISLEDDLLEQFESkswEKLSVKLKRKAPRDGKPVNSSKIHAVVVNAQKR 581
Cdd:TIGR00963 483 IGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNLMRIFGG---DRLEGLMRRLGMDDDEPIESKMVSRALESAQKR 559
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 582 LEGANYDIRKDLLSYDEVIDLQRKMVYKERDKLLERNKLgvsSEKILrEVAEYaFIHTEVDpekmdkYYARQKEFLGGTK 661
Cdd:TIGR00963 560 VEGRNFDIRKQLLEYDDVLNKQREVIYAERRRVLESEDL---SELIL-QMLES-TLDRIVD------AYINEEKLSEEWD 628
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 662 FPISFDEVSLMEPTE-------------------VVEKIVAWHKQERDKFPLETITAIEKEVYLNLMDQMWVMHLDAMVQ 722
Cdd:TIGR00963 629 LEGLIEKLKTLFLLDgdltpedlenltsedlkelLLEKIRAAYDEKEEQLESERMREFERYVLLQSIDRKWKEHLDAMDL 708
|
730 740
....*....|....*....|....*...
gi 502749986 723 LREGIHLRAYGQQDPLVMYQKEGAQLFE 750
Cdd:TIGR00963 709 LREGIGLRSYGQKDPLIEYKNEGFNLFE 736
|
|
| secA |
PRK12903 |
preprotein translocase subunit SecA; Reviewed |
1-751 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237258 [Multi-domain] Cd Length: 925 Bit Score: 808.13 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 1 MKQNFDDRKIVKQYREIARQIVKKEGLYKNMDQNELCEQTNYWREKFKTKPMTDRDKINIFALAREAASRIIGLDAVVVQ 80
Cdd:PRK12903 4 LKLFFFKSTEMRIAEKILKQINDLEPYYRNLTDEELANKTNEFKDRLKNGETLEDIRVEAFAVAREATKRVLGKRPYDVQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 81 LIGALVLGDGKVAEMKTGEGKTLMSLFVMFIEVMRGNRVHLVTANEYLARRDREEIGQVLEYLGVSVALNESGLDKAQKK 160
Cdd:PRK12903 84 IIGGIILDLGSVAEMKTGEGKTITSIAPVYLNALTGKGVIVSTVNEYLAERDAEEMGKVFNFLGLSVGINKANMDPNLKR 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 161 AIYTADVIYGTASEFGFDYLRDNMVRQKEDKVQSGLDFVLIDEADSILIDEARTPLLISDRKEEDLSLYQTANKLVKTMM 240
Cdd:PRK12903 164 EAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQSNDSNLYLAADQFVRTLK 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 241 KDDYEMEEHKRFVWLNDAGIEKAQKFWGVESLYSAEaQSEL--RITMLLmRAHFLMHKDKDYVVLDDEVLIIDPHTGRAL 318
Cdd:PRK12903 244 EDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIE-NSELvhRIQNAL-RAHKVMKEDVEYIVRDGKIELVDQFTGRIM 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 319 PGRRFNDGLHQAIEAKEEVEVNEESRTLATITIQNYFRMYKKISGMTGTAKTEEEEFRQIYNMDVVVIPTNLRINREDVP 398
Cdd:PRK12903 322 EGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMRVNVVPTNKPVIRKDEP 401
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 399 DDIFYTKKEKGRAIVYEVSWRYEKGQPTLIGTSSIKSNEWISGLLDAAGIPHQVLNAKNHAQEAEIIAKAGKRGMVTLAT 478
Cdd:PRK12903 402 DSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQNAREAEIIAKAGQKGAITIAT 481
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 479 NMAGRGTDIKLDLDVHKLGGLAVIGTERHESRRIDLQLMGRSGRRGDPGFSKFMISLEDDLLEQFESK-SWEKLSVKLKr 557
Cdd:PRK12903 482 NMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDDQLFRRFSNFdKIKEAFKKLG- 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 558 kaprdGKPVNSSKIHAVVVNAQKRLEGANYDIRKDLLSYDEVIDLQRKMVYKERDKLLERNKLGVSSEKILREVAE---- 633
Cdd:PRK12903 561 -----DDEIKSKFFSKALLNAQKKIEGFNFDTRKNVLDYDDVIRQQRDLIYAQRDLILIADDLSHVIEKMISRAVEqilk 635
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 634 -YAFIH--TEVDPEKMDKYYarQKEFLGGTKFPISFDEVSLMEPTEVVEKIV--------AWHKQERDKFPLETITAIEK 702
Cdd:PRK12903 636 nSFIILknNTINYKELVEFL--NDNLLRITHFKFSEKDFENYHKEELAQYLIealneiyfKKRQVILDKIALNTFFESER 713
|
730 740 750 760
....*....|....*....|....*....|....*....|....*....
gi 502749986 703 EVYLNLMDQMWVMHLDAMVQLREGIHLRAYGQQDPLVMYQKEGAQLFEK 751
Cdd:PRK12903 714 YIILSALDKYWQNHIDTMDKLRSGVNLVQYSQKNPYQVYTEEGTKKFNI 762
|
|
| secA |
PRK12906 |
preprotein translocase subunit SecA; Reviewed |
7-755 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237260 [Multi-domain] Cd Length: 796 Bit Score: 798.92 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 7 DRKIVKQYREIARQIVKKEGLYKNMDQNELCEQTNYWREKFKTKPMTDRDKINIFALAREAASRIIGLDAVVVQLIGALV 86
Cdd:PRK12906 12 DKRELKRLEKIADKVNALEDEYEKLSDEQLQAKTPEFRDRIKDGESLDDLLPEAFAVAREGAKRVLGLRPFDVQIIGGIV 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 87 LGDGKVAEMKTGEGKTLMSLFVMFIEVMRGNRVHLVTANEYLARRDREEIGQVLEYLGVSVALNESGLDKAQKKAIYTAD 166
Cdd:PRK12906 92 LHEGNIAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGELYRWLGLTVGLNLNSMSPDEKRAAYNCD 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 167 VIYGTASEFGFDYLRDNMVRQKEDKVQSGLDFVLIDEADSILIDEARTPLLISDRKEEDLSLYQTANKLVKTMMKD---- 242
Cdd:PRK12906 172 ITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKATDLYIRADRFVKTLIKDeaed 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 243 --------DYEMEEHKRFVWLNDAGIEKAQKFWGVESLYSAEAQSELRITMLLMRAHFLMHKDKDYVVLDDEVLIIDPHT 314
Cdd:PRK12906 252 gdddedtgDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRANYIMLKDIDYVVQDGEVLIVDEFT 331
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 315 GRALPGRRFNDGLHQAIEAKEEVEVNEESRTLATITIQNYFRMYKKISGMTGTAKTEEEEFRQIYNMDVVVIPTNLRINR 394
Cdd:PRK12906 332 GRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTEEEEFREIYNMEVITIPTNRPVIR 411
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 395 EDVPDDIFYTKKEKGRAIVYEVSWRYEKGQPTLIGTSSIKSNEWISGLLDAAGIPHQVLNAKNHAQEAEIIAKAGKRGMV 474
Cdd:PRK12906 412 KDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGAV 491
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 475 TLATNMAGRGTDIKLDLDVHKLGGLAVIGTERHESRRIDLQLMGRSGRRGDPGFSKFMISLEDDLLEQFESkswEKLSVK 554
Cdd:PRK12906 492 TIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRRFGS---DRVKAF 568
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 555 LKR-KAPRDGKPVNSSKIHAVVVNAQKRLEGANYDIRKDLLSYDEVIDLQRKMVYKERDK-LLERNKLGVSSEKILREVA 632
Cdd:PRK12906 569 LDRlGMNDDDQVIESRMITRQVESAQKRVEGNNYDTRKQLLQYDDVMREQREVIYKQRMQvINEDKDLKEVLMPMIKRTV 648
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 633 EYAF-IHTEVDPEKMDkYYARQKEFLGGTKFPISFDEVSL--MEPTEVVEKIV-----AWHKQERDKFPLETITAIEKEV 704
Cdd:PRK12906 649 DRQVqMYTQGDKKDWD-LDALRDFIVSAMPDEETFDFEDLkgKSPEELKKRLLdivedNYAEKEKQLGDPTQMLEFEKVV 727
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|.
gi 502749986 705 YLNLMDQMWVMHLDAMVQLREGIHLRAYGQQDPLVMYQKEGAQLFEKFQAD 755
Cdd:PRK12906 728 ILRVVDSHWTDHIDAMDQLRQSIGLRGYGQLNPLVEYQEEGYRMFEEMISN 778
|
|
| SecA2_Bac_anthr |
TIGR04397 |
accessory Sec system translocase SecA2, Bacillus type; Members of this family always occur in ... |
1-755 |
0e+00 |
|
accessory Sec system translocase SecA2, Bacillus type; Members of this family always occur in genomes with the preprotein translocase SecA (TIGR00963) and closely resemble it, hence the designation SecA2. However, this appears to mark a different type of accessory Sec system SecA2 (TIGR03714) from the serine-rich glycoprotein type found in Staphylococcus and Streptococcus, and the actinobacterial SecA2 (TIGR04221). This type occurs in species including Bacillus anthracis, Geobacillus thermoglucosidasius, Solibacillus silvestris, etc. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 275190 [Multi-domain] Cd Length: 774 Bit Score: 753.87 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 1 MKQNFDDRKiVKQYREIARQIVKKEGLYKNMDQNELCEQTNYWREKFKTKPMTDRDKINIFALAREAASRIIGLDAVVVQ 80
Cdd:TIGR04397 4 LKGDSSARE-LKRYEKLVAQINELEPKMEKLSDEELRQKTITFKERLEDGKTVDDIKVEAFAVVREASKRVLGMRHYDVQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 81 LIGALVLGDGKVAEMKTGEGKTLMSLFVMFIEVMRGNRVHLVTANEYLARRDREEIGQVLEYLGVSVALNESGLDKAQKK 160
Cdd:TIGR04397 83 LIGGLVLLEGNIAEMPTGEGKTLVASLPSYLRALEGKGVHVITVNDYLARRDRELIGQIHEFLGLTVGLNVPMMEASEKK 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 161 AIYTADVIYGTASEFGFDYLRDNMVRQKEDKVQSGLDFVLIDEADSILIDEARTPLLISDRKEEDLSLYQTANKLVKTMM 240
Cdd:TIGR04397 163 EAYQADITYGVGTEFGFDYLRDNMVYSLSDKVQRPYHFAIIDEIDSVLIDEAKTPLIIAGKTGSSSELHYICARIIKSFE 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 241 KD-DYEMEEHKRFVWLNDAGIEKAQKFWGVESLYSAEAQSELRITMLLMRAHFLMHKDKDYVVLDDEVLIIDPHTGRALP 319
Cdd:TIGR04397 243 ETeDYEYDPETKAASLTEEGITKIERAFGIDNLYDLEHQTLYHYLIQALRAHVLFKRDVDYIVKDGKIELVDMFTGRIME 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 320 GRRFNDGLHQAIEAKEEVEVNEESRTLATITIQNYFRMYKKISGMTGTAKTEEEEFRQIYNMDVVVIPTNLRINREDVPD 399
Cdd:TIGR04397 323 GRSLSDGLHQAIEAKEGLEITEENKTQASITIQNYFRMYPKLSGMTGTAKTEEKEFRETYGMDVVQIPTNRPRIRVDWPD 402
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 400 DIFYTKKEKGRAIVYEVSWRYEKGQPTLIGTSSIKSNEWISGLLDAAGIPHQVLNAKNHAQEAEIIAKAGKRGMVTLATN 479
Cdd:TIGR04397 403 RVFMTYEAKYKAVAKEVKKRHETGQPILIGTTSILQSETVAKYLDKEKIPYQLLNAKTVEQEADLIALAGQKGQVTIATN 482
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 480 MAGRGTDIKLDLDVHKLGGLAVIGTERHESRRIDLQLMGRSGRRGDPGFSKFMISLEDDLLEQFESKSWEKLSVKLKrka 559
Cdd:TIGR04397 483 MAGRGTDILLGEGVHELGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSQFIISLEDDMFRRYAAEELEKWKKKLK--- 559
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 560 PRDGKPVNSSKIHAVVVNAQKRLEGANYDIRKDLLSYDEVIDLQRKMVYKERDKLLERNKLGVSSEKILREVAEYA---F 636
Cdd:TIGR04397 560 TDETGEILNKDVHEFVDKVQRIIEGSHYSAREYNLKLDDVINEQRNVIYQLRDKLLEEEDAISEVLKMIRSAVEQIidqY 639
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 637 IHTEVDPEKMDkyYARQKEFLGG-TKFPISFDEVSLMEPTEVVEKIVAWHKQ---ERDKFPL-ETITAIEKEVYLNLMDQ 711
Cdd:TIGR04397 640 CPEEVLPEEWD--LERLTEELNRiFPVTFVTFDKRIADKEELKDLVKDTYEQyiaALEKLPEnEEIQMRLKHVMLSVIDA 717
|
730 740 750 760
....*....|....*....|....*....|....*....|....
gi 502749986 712 MWVMHLDAMVQLREGIHLRAYGQQDPLVMYQKEGAQLFEKFQAD 755
Cdd:TIGR04397 718 HWTRHLDAMNLLKEGIGLRSYQQEDPMRLYQKEGLELFEAMYQN 761
|
|
| secA |
CHL00122 |
preprotein translocase subunit SecA; Validated |
1-765 |
0e+00 |
|
preprotein translocase subunit SecA; Validated
Pssm-ID: 214371 [Multi-domain] Cd Length: 870 Bit Score: 662.46 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 1 MKQN-FDDRKIVKQYREIARQIVKKEGLYKNMDQNELCEQTNYWREKFKTKPMTDRDKINIFALAREAASRIIGLDAVVV 79
Cdd:CHL00122 1 MFNNlFNNKSKLNKYQTLVNQINLLEEELKNLTDTELRSKTNKLKKRLSNGQNLNKIIPESFALTREASFRTLGLRHFDV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 80 QLIGALVLGDGKVAEMKTGEGKTLMSLFVMFIEVMRGNRVHLVTANEYLARRDREEIGQVLEYLGVSVALNESGLDKAQK 159
Cdd:CHL00122 81 QLIGGLVLNDGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGLIQEGMSSEER 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 160 KAIYTADVIYGTASEFGFDYLRDNMVRQKEDKVQSGLDFVLIDEADSILIDEARTPLLISDRKEEDLSLYQTANKLVKTM 239
Cdd:CHL00122 161 KKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISGQSKTNIDKYIVADELAKYL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 240 MKD-DYEMEEHKRFVWLNDAGIEKAQKFWGVESLYSAEAQSELRITMLLmRAHFLMHKDKDYVVLDDEVLIIDPHTGRAL 318
Cdd:CHL00122 241 EKNvHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNAL-KAKELFFKNVHYIVRNNEIIIVDEFTGRIM 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 319 PGRRFNDGLHQAIEAKEEVEVNEESRTLATITIQNYFRMYKKISGMTGTAKTEEEEFRQIYNMDVVVIPTNLRINREDVP 398
Cdd:CHL00122 320 PGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKIYNLEVVCIPTHRPMLRKDLP 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 399 DDIFYTKKEKGRAIVYEVSWRYEKGQPTLIGTSSIKSNEWISGLLDAAGIPHQVLNAK--NHAQEAEIIAKAGKRGMVTL 476
Cdd:CHL00122 400 DLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKpeNVRRESEIVAQAGRKGSITI 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 477 ATNMAGRGTDI----------------------------------------------KLDLD------------------ 492
Cdd:CHL00122 480 ATNMAGRGTDIilggnpefklkkelydlllsyksnekistisqnflnilnslkndlkFLSLSdfenlkilneaseisipk 559
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 493 ----------------------------VHKLGGLAVIGTERHESRRIDLQLMGRSGRRGDPGFSKFMISLEDDLLEQFE 544
Cdd:CHL00122 560 nsyqlslrflynellekykklqekekkiVKKLGGLYVIGTERHESRRIDNQLRGRAGRQGDPGSSRFFLSLEDNLLRIFG 639
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 545 SkswEKLSVKLKRKAPRDgKPVNSSKIHAVVVNAQKRLEGANYDIRKDLLSYDEVIDLQRKMVYKERDKLLERNKLGvss 624
Cdd:CHL00122 640 G---DKIQNLMQTLNLDD-EPLESKLLSKSLDSAQKKVEEYYYDQRKQLFEYDQVLNKQRKAIYSERRKILESQSLR--- 712
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 625 EKILrEVAEY------AFIHTEVDPEKMDKYYARQKEFLGGTKFPISFDEVSLMEPTEVVEKIVA--W-----HKQERDK 691
Cdd:CHL00122 713 DWIL-AYGEQviddiiTFLKSRKNPNNKFINLINKFKELLKLPLCFNKSDLNTLNSGELKKFLYQqfWisydlKELYLEQ 791
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 502749986 692 FPLETITAIEKEVYLNLMDQMWVMHLDAMVQLREGIHLRAYGQQDPLVMYQKEGAQLFEKFQADYHFYFAHALL 765
Cdd:CHL00122 792 IGTGLMRELERSLLLQQIDKSWKEHLQKMSLLREAIGWRSYGQKDPLIEYKNEAFNLFINMINHIRHLVIYDLF 865
|
|
| secA2 |
TIGR03714 |
accessory Sec system translocase SecA2; Members of this protein family are homologous to SecA ... |
7-752 |
0e+00 |
|
accessory Sec system translocase SecA2; Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 163426 [Multi-domain] Cd Length: 762 Bit Score: 646.71 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 7 DRKIVKQYREIARQIVKKEGLYKNMDQNELCEQTNYWREKFKTKPMTDRDKINIFALAREAASRIIGLDAVVVQLIGALV 86
Cdd:TIGR03714 2 NNLRLKKLRKILNKINALKGKMATLSDEELQAKTAEFKNRLVEGESLDDILPEAYAVVREADKRVLGMFPYDVQVLGAIV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 87 LGDGKVAEMKTGEGKTLMSLFVMFIEVMRGNRVHLVTANEYLARRDREEIGQVLEYLGVSVALN-----ESGLDKAQKKA 161
Cdd:TIGR03714 82 LHQGNIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGvvddpDEEYDANEKRK 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 162 IYTADVIYGTASEFGFDYLRDNMVRQKEDKVQSGLDFVLIDEADSILIDEARTPLLISDRKEEDLSLYQTANKLVKTMMK 241
Cdd:TIGR03714 162 IYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPRVQSNLYHIADTFVRTLKE 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 242 D-DYEMEEHKRFVWLNDAGIEKAQKFWGVESLYSAEAQSELRITMLLMRAHFLMHKDKDYVVLDDEVLIIDPHTGRALPG 320
Cdd:TIGR03714 242 DvDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDYVVTNGEVVLLDRITGRLLEG 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 321 RRFNDGLHQAIEAKEEVEVNEESRTLATITIQNYFRMYKKISGMTGTAKTEEEEFRQIYNMDVVVIPTNLRINREDVPDD 400
Cdd:TIGR03714 322 TKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETYSLSVVKIPTNKPIIRIDYPDK 401
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 401 IFYTKKEKGRAIVYEVSWRYEKGQPTLIGTSSIKSNEWISGLLDAAGIPHQVLNAKNHAQEAEIIAKAGKRGMVTLATNM 480
Cdd:TIGR03714 402 IYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKGAVTVATSM 481
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 481 AGRGTDIKLDLDVHKLGGLAVIGTERHESRRIDLQLMGRSGRRGDPGFSKFMISLEDDLLEQFeSKSWEKLSVKLKRKAP 560
Cdd:TIGR03714 482 AGRGTDIKLGKGVAELGGLAVIGTERMENSRVDLQLRGRSGRQGDPGSSQFFVSLEDDLIKRW-SPSWLKKYYKKYSVKD 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 561 RDGKPVN--SSKIHAVVVNAQKRLEGANYDIRKDLLSYDEVIDLQRKMVYKERDKLLE-RNKLGVSSEKILREVAEYAFI 637
Cdd:TIGR03714 561 SKLKPSAlfKRRFRKIVEKAQRASEDKGESAREQTNEFEESLSIQRENIYAERNRLIEgSDFLDDDVDQIIDDVFNMYAE 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 638 HTEVDPEKMDKYYARQKEFLGGTKFPISFDevsLMEPTEVVEKIV--------AWHKQERDKFPLETitaIEKEVYLNLM 709
Cdd:TIGR03714 641 EQDLSNKSLLKRFILENLSYQFKNDPDEFD---LKNKEAIKDFLKeiadkelsEKKKVLNNDYLFND---FERLSILKAI 714
|
730 740 750 760
....*....|....*....|....*....|....*....|...
gi 502749986 710 DQMWVMHLDAMVQLREGIHLRAYGQQDPLVMYQKEGAQLFEKF 752
Cdd:TIGR03714 715 DENWIEQVDYLQQLKTVVTNRQNGQRNPIFEYHKEALESYEYM 757
|
|
| secA |
PRK12901 |
preprotein translocase subunit SecA; Reviewed |
79-752 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237256 [Multi-domain] Cd Length: 1112 Bit Score: 604.32 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 79 VQLIGALVLGDGKVAEMKTGEGKTLMSLFVMFIEVMRGNRVHLVTANEYLARRDREEIGQVLEYLGVSVALnesgLDK-- 156
Cdd:PRK12901 173 VQLIGGVVLHQGKIAEMATGEGKTLVATLPVYLNALTGNGVHVVTVNDYLAKRDSEWMGPLYEFHGLSVDC----IDKhq 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 157 ----AQKKAiYTADVIYGTASEFGFDYLRDNMVRQKEDKVQSGLDFVLIDEADSILIDEARTPLLIS------------- 219
Cdd:PRK12901 249 pnseARRKA-YNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVLIDDARTPLIISgpvpkgddqefee 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 220 ------------------------------DRKEEDLSLYQTA-----NK--------------LVKT----MMKDDYEM 246
Cdd:PRK12901 328 lkprverlveaqrklatqflaeakkliaegDKKEGGLALLRAYrglpkNKalikflseegikalLQKTenfyMQDNNREM 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 247 -----------EEHKRFVWLNDAGIEK----------------AQKFWGVESLYS------AEAQSEL---------RIT 284
Cdd:PRK12901 408 pevdeelyfviDEKNNSVELTDKGIDYitgndedpdffvlpdiGTELAEIENEGGldeeeeAEKKEELfqdysvkseRVH 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 285 ML--LMRAHFLMHKDKDYVVLDDEVLIIDPHTGRALPGRRFNDGLHQAIEAKEEVEVNEESRTLATITIQNYFRMYKKIS 362
Cdd:PRK12901 488 TLnqLLKAYTLFEKDDEYVVMDGKVKIVDEQTGRIMEGRRYSDGLHQAIEAKENVKIEAATQTFATITLQNYFRMYHKLA 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 363 GMTGTAKTEEEEFRQIYNMDVVVIPTNLRINREDVPDDIFYTKKEKGRAIVYEVSWRYEKGQPTLIGTSSIKSNEWISGL 442
Cdd:PRK12901 568 GMTGTAETEAGEFWDIYKLDVVVIPTNRPIARKDKEDLVYKTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRM 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 443 LDAAGIPHQVLNAKNHAQEAEIIAKAGKRGMVTLATNMAGRGTDIKLDLDVHKLGGLAVIGTERHESRRIDLQLMGRSGR 522
Cdd:PRK12901 648 LKMRKIPHNVLNAKLHQKEAEIVAEAGQPGTVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGR 727
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 523 RGDPGFSKFMISLEDDLLEQFESKSWEKLSVKLKRKaprDGKPVNSSKIHAVVVNAQKRLEGANYDIRKDLLSYDEVIDL 602
Cdd:PRK12901 728 QGDPGSSQFYVSLEDNLMRLFGSERIAKVMDRMGLK---EGEVIQHSMISKSIERAQKKVEENNFGIRKRLLEYDDVMNS 804
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 603 QRKMVYKERDKLLERNKLGVSSEKILREVAEYAfihteVDPEKMDKYYARQKEFLG---GTKFPISFDEVSLMEPTEVVE 679
Cdd:PRK12901 805 QREVIYKRRRHALMGERLGMDIANMIYDVCEAI-----VENNKVANDYKGFKFELIrtlAMESPITEEEFNKLKKDELTD 879
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 680 KI-----------------VAW-----------HKQERDKFPL----------------------ETITAIEKEVYLNLM 709
Cdd:PRK12901 880 KLydaalenyqrkmeriaeIAFpvikqvyeeqgNMYERIVVPFtdgkrtlnvvtnlkeayetegkEIVKDFEKNITLHII 959
|
810 820 830 840
....*....|....*....|....*....|....*....|...
gi 502749986 710 DQMWVMHLDAMVQLREGIHLRAYGQQDPLVMYQKEGAQLFEKF 752
Cdd:PRK12901 960 DEAWKEHLREMDELKQSVQNASYEQKDPLLIYKFESFELFKNM 1002
|
|
| SecA_DEAD |
pfam07517 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
1-376 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the pfam00270.
Pssm-ID: 462190 [Multi-domain] Cd Length: 379 Bit Score: 551.72 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 1 MKQNFDDR--KIVKQYREIARQIVKKEGLYKNMDQNELCEQTNYWREKFKTKPMTDRDKINIFALAREAASRIIGLDAVV 78
Cdd:pfam07517 1 LKKIFGSPneRDLKRLRKIVDQINALEEELKALSDEELRAKTDELRERLREGESLDDILPEAFALVREAAKRVLGMRHYD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 79 VQLIGALVLGDGKVAEMKTGEGKTLMSLFVMFIEVMRGNRVHLVTANEYLARRDREEIGQVLEYLGVSVALNESGLDKAQ 158
Cdd:pfam07517 81 VQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVITSDMDPEE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 159 KKAIYTADVIYGTASEFGFDYLRDNMVRQKEDKVQSGLDFVLIDEADSILIDEARTPLLISDRKEEDLSLYQTANKLVKT 238
Cdd:pfam07517 161 RRAAYNADITYGTNNELGFDYLRDNMATSKEDKVQRGLNFAIVDEVDSILIDEARTPLIISGPSEDDSELYREADRLVKS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 239 MMKD-DYEMEEHKRFVWLNDAGIEKAQKFWGVESLYSAEAQSELRITMLLMRAHFLMHKDKDYVVLDDEVLIIDPHTGRA 317
Cdd:pfam07517 241 LEEDgDYEIDEKSKNVELTEKGIEKIEKLLGIDNLYDPENVELLHHINQALKAHHLFKRDVDYIVRDGEVVIVDEFTGRV 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 502749986 318 LPGRRFNDGLHQAIEAKEEVEVNEESRTLATITIQNYFRMYKKISGMTGTAKTEEEEFR 376
Cdd:pfam07517 321 MPGRRWSDGLHQAIEAKEGVEITPESQTLASITYQNFFRLYPKLSGMTGTAKTEAEEFR 379
|
|
| SecA_DEAD |
smart00957 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
1-376 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the.
Pssm-ID: 214937 [Multi-domain] Cd Length: 380 Bit Score: 551.26 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 1 MKQNFDDR--KIVKQYREIARQIVKKEGLYKNMDQNELCEQTNYWREKFKTKPMTDRDKINIFALAREAASRIIGLDAVV 78
Cdd:smart00957 1 LKKLFGSKndRELKRLRKIVDQINALEPEMEALSDEELRAKTAEFKERLAEGESLDDLLPEAFAVVREAAKRVLGMRHFD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 79 VQLIGALVLGDGKVAEMKTGEGKTLMSLFVMFIEVMRGNRVHLVTANEYLARRDREEIGQVLEYLGVSVALNESGLDKAQ 158
Cdd:smart00957 81 VQLIGGIVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVIVSGMSPEE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 159 KKAIYTADVIYGTASEFGFDYLRDNMVRQKEDKVQSGLDFVLIDEADSILIDEARTPLLIS-DRKEEDLSLYQTANKLVK 237
Cdd:smart00957 161 RRAAYAADITYGTNNEFGFDYLRDNMAFSKEDKVQRGLNYAIVDEVDSILIDEARTPLIISgPAEDESSDLYHRADKFVP 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 238 TMMKD-DYEMEEHKRFVWLNDAGIEKAQKFWGVESLYSAEAQSELRITMLLMRAHFLMHKDKDYVVLDDEVLIIDPHTGR 316
Cdd:smart00957 241 RLKEDeDYTVDEKSRTVELTEEGIEKAEKLLGIDNLYDPENIELLHHVNQALRAHYLFKRDVDYIVRDGEVVIVDEFTGR 320
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 317 ALPGRRFNDGLHQAIEAKEEVEVNEESRTLATITIQNYFRMYKKISGMTGTAKTEEEEFR 376
Cdd:smart00957 321 VMEGRRYSDGLHQAIEAKEGVEIQEENQTLATITFQNYFRMYKKLSGMTGTAKTEAEEFR 380
|
|
| secA |
PRK12898 |
preprotein translocase subunit SecA; Reviewed |
8-598 |
1.15e-179 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237253 [Multi-domain] Cd Length: 656 Bit Score: 529.58 E-value: 1.15e-179
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 8 RKIVKQYREIARQIVKKEGLYKNMDQNELCEQTNYWREKFK-TKPMTDRDKINIFALAREAASRIIGLDAVVVQLIGALV 86
Cdd:PRK12898 35 GRAARRQRLLADRVLAAAEALAGLSEEALRARSLALRARLRaRDGFRDALLAEAFALVREASGRVLGQRHFDVQLMGGLA 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 87 LGDGKVAEMKTGEGKTLMSLFVMFIEVMRGNRVHLVTANEYLARRDREEIGQVLEYLGVSVALNESGLDKAQKKAIYTAD 166
Cdd:PRK12898 115 LLSGRLAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPDERRAAYGAD 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 167 VIYGTASEFGFDYLRD--------NMVRQK-----------EDKVQSGLDFVLIDEADSILIDEARTPLLIS--DRKEED 225
Cdd:PRK12898 195 ITYCTNKELVFDYLRDrlalgqraSDARLAleslhgrssrsTQLLLRGLHFAIVDEADSVLIDEARTPLIISapAKEADE 274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 226 LSLYQTANKLVKTMMKD-DYEMEEHKRFVWLNDAGIEKAQKFwgVESLYSAeAQSELRITMLLMRA---HFLMHKDKDYV 301
Cdd:PRK12898 275 AEVYRQALELAAQLKEGeDYTIDAAEKRIELTEAGRARIAEL--AESLPPA-WRGAVRREELVRQAlsaLHLFRRDEHYI 351
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 302 VLDDEVLIIDPHTGRALPGRRFNDGLHQAIEAKEEVEVNEESRTLATITIQNYFRMYKKISGMTGTAKTEEEEFRQIYNM 381
Cdd:PRK12898 352 VRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRLAGMTGTAREVAGELWSVYGL 431
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 382 DVVVIPTNLRINREDVPDDIFYTKKEKGRAIVYEVSWRYEKGQPTLIGTSSIKSNEWISGLLDAAGIPHQVLNAKNHAQE 461
Cdd:PRK12898 432 PVVRIPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQDAEE 511
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 462 AEIIAKAGKRGMVTLATNMAGRGTDIKLDLDVHKLGGLAVIGTERHESRRIDLQLMGRSGRRGDPGFSKFMISLEDDLLE 541
Cdd:PRK12898 512 AAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDDLLQ 591
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*...
gi 502749986 542 QFesKSWEKLSVKLKRKA-PRDGKPVNSSKIHavvvNAQKRLEGANYDIRKDLLSYDE 598
Cdd:PRK12898 592 SF--LGSRGLAIRRMELLgPRGGRALGALLLR----RAQRRAERLHARARRALLHADE 643
|
|
| DEXDc_SecA |
cd17928 |
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the ... |
35-388 |
1.44e-108 |
|
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the vast majority of bacterial and ER-exported proteins. SecA binds both the signal sequence and the mature domain of the preprotein emerging from the ribosome. SecA belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350686 [Multi-domain] Cd Length: 230 Bit Score: 330.65 E-value: 1.44e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 35 ELCEQTNYWREKFKTKPMTDRDKINIFALAREAASRIIGLDAVVVQLIGALVLGDGKVAEMKTGEGKTLMSLFVMFIEVM 114
Cdd:cd17928 1 ELRAKTDELRERLAKGETLDDLLPEAFALVREAARRVLGMRPFDVQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 115 RGNRVHLVTANEYLARRDREEIGQVLEYLGVSVALNESGLDKAQKKAIYTADVIYGTASEFGFDYLRDNMVRQKEDKVQS 194
Cdd:cd17928 81 TGKGVHVVTVNDYLARRDAEWMGPLYEFLGLTVGVILSDMSPDERREAYAADITYGTNNELGFDYLRDNMVTSKEDLVQR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 195 GLDFVLIDEADSILIDEARTPLLIsdrkeedlslyqtanklvktmmkddyemeehkrfvwlndagiekaqkfwgveslys 274
Cdd:cd17928 161 GLNFAIVDEVDSILIDEARTPLII-------------------------------------------------------- 184
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 275 aeaqselritmllmrahflmhkdkdyvvlddevliidphtgralpgrrfndglhqaieakeevevneeSRTLATITIQNY 354
Cdd:cd17928 185 --------------------------------------------------------------------SGTLATITFQNY 196
|
330 340 350
....*....|....*....|....*....|....
gi 502749986 355 FRMYKKISGMTGTAKTEEEEFRQIYNMDVVVIPT 388
Cdd:cd17928 197 FRLYPKLAGMTGTAKTEAEEFREIYNLDVVVIPT 230
|
|
| SF2_C_secA |
cd18803 |
C-terminal helicase domain of the protein translocase subunit secA; SecA is a component of the ... |
394-534 |
1.52e-72 |
|
C-terminal helicase domain of the protein translocase subunit secA; SecA is a component of the Sec translocase that transports the vast majority of bacterial and ER-exported proteins. SecA binds both the signal sequence and the mature domain of the preprotein emerging from the ribosome. SecA is a DEAD-like helicase belonging to superfamily (SF)2, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF1 helicases, SF2 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Pssm-ID: 350190 [Multi-domain] Cd Length: 141 Bit Score: 232.83 E-value: 1.52e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 394 REDVPDDIFYTKKEKGRAIVYEVSWRYEKGQPTLIGTSSIKSNEWISGLLDAAGIPHQVLNAKNHAQEAEIIAKAGKRGM 473
Cdd:cd18803 1 RKDLPDLVYKTEEEKWKAIVEEVKELHAKGQPVLVGTRSVEKSELLSALLKEEGIPHNVLNAKNHAREAEIIAEAGQKGA 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 502749986 474 VTLATNMAGRGTDIKLDLDVHKLGGLAVIGTERHESRRIDLQLMGRSGRRGDPGFSKFMIS 534
Cdd:cd18803 81 VTIATNMAGRGTDIKLGGNVEELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLS 141
|
|
| SecA_PP_bind |
smart00958 |
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and ... |
223-332 |
4.09e-44 |
|
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane. This domain has been found to cross-link to preproteins, thought to indicate a role in preprotein binding. The pre-protein cross-linking domain is comprised of two sub domains that are inserted within the ATPase domain.
Pssm-ID: 214938 [Multi-domain] Cd Length: 114 Bit Score: 154.53 E-value: 4.09e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 223 EEDLSLYQTANKLVKTMMKD--DYEMEEHKRFVWLNDAGIEKAQKFWGVESLYSAEAQSELRITMLLMRAHFLMHKDKDY 300
Cdd:smart00958 3 EDSSELYKRADELVPTLKKDeeDYEVDEKSRQVALTEEGIEKAEKLLGIDNLYDPENIELVHHVNQALRAHKLFKRDVDY 82
|
90 100 110
....*....|....*....|....*....|..
gi 502749986 301 VVLDDEVLIIDPHTGRALPGRRFNDGLHQAIE 332
Cdd:smart00958 83 IVRDGEVVIVDEFTGRVMPGRRWSDGLHQAIE 114
|
|
| SecA_SW |
pfam07516 |
SecA Wing and Scaffold domain; SecA protein binds to the plasma membrane where it interacts ... |
565-755 |
4.34e-44 |
|
SecA Wing and Scaffold domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This family is composed of two C-terminal alpha helical subdomains: the wing and scaffold subdomains.
Pssm-ID: 462189 [Multi-domain] Cd Length: 213 Bit Score: 158.04 E-value: 4.34e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 565 PVNSSKIHAVVVNAQKRLEGANYDIRKDLLSYDEVIDLQRKMVYKERDKLLERNKLGVSSEKILREVAEyAFIHTEVDPE 644
Cdd:pfam07516 1 PIEHKMVSKAIENAQKKVEGRNFDIRKNLLEYDDVMNQQREVIYAQRREILEGEDLKEDILEMIEDVVD-DIVDEYIPPE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 645 K------MDKYYARQKEFLGGTKFPISFDEVSLMEPTEVVEKIV----AWHKQERDKFPLETITAIEKEVYLNLMDQMWV 714
Cdd:pfam07516 80 EspeewdLEGLKEALNEIFGLELPISEWEEEEDLDKEELKERLLeaaeEAYEEKEEEIGPELMRELERVVLLQVIDSKWK 159
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 502749986 715 MHLDAMVQLREGIHLRAYGQQDPLVMYQKEGAQLFEKFQAD 755
Cdd:pfam07516 160 EHLDAMDQLRQGIGLRAYGQKDPLVEYKREGFELFEEMLDA 200
|
|
| SecA_PP_bind |
pfam01043 |
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and ... |
224-332 |
1.30e-40 |
|
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane. This domain has been found to cross-link to preproteins, thought to indicate a role in preprotein binding. The pre-protein cross-linking domain is comprised of two sub domains that are inserted within the ATPase domain.
Pssm-ID: 460039 [Multi-domain] Cd Length: 110 Bit Score: 144.48 E-value: 1.30e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 224 EDLSLYQTANKLVKTMMKD-DYEMEEHKRFVWLNDAGIEKAQKFWGVESLYSAEAQSELRITMLLMRAHFLMHKDKDYVV 302
Cdd:pfam01043 1 KSTELYRQADKFVKQLKEDeDYEVDEKAKTVELTEEGIEKAEKLLGIDNLYDPENIELVHHINQALKAHHLFKRDVDYIV 80
|
90 100 110
....*....|....*....|....*....|
gi 502749986 303 LDDEVLIIDPHTGRALPGRRFNDGLHQAIE 332
Cdd:pfam01043 81 KDGEVVIVDEFTGRLMPGRRYSDGLHQAIE 110
|
|
| SF2-N |
cd00046 |
N-terminal DEAD/H-box helicase domain of superfamily 2 helicases; The DEAD/H-like superfamily ... |
88-217 |
7.29e-13 |
|
N-terminal DEAD/H-box helicase domain of superfamily 2 helicases; The DEAD/H-like superfamily 2 helicases comprise a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This N-terminal domain contains the ATP-binding region.
Pssm-ID: 350668 [Multi-domain] Cd Length: 146 Bit Score: 66.66 E-value: 7.29e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 88 GDGKVAEMKTGEGKTLMSLFVMFIE-VMRGNRVHLVTANEYLARRDREEIGQVLEyLGVSVALNESGLDKAQK--KAIYT 164
Cdd:cd00046 1 GENVLITAPTGSGKTLAALLAALLLlLKKGKKVLVLVPTKALALQTAERLRELFG-PGIRVAVLVGGSSAEERekNKLGD 79
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 502749986 165 ADVIYGTASEFGFDYLRDNMVRQKEdkvqsgLDFVLIDEADSILIDEARTPLL 217
Cdd:cd00046 80 ADIIIATPDMLLNLLLREDRLFLKD------LKLIIVDEAHALLIDSRGALIL 126
|
|
| DEAD-like_helicase_C |
cd09300 |
C-terminal helicase domain of the DEAD-like helicases; This hierarchy of DEAD-like helicases ... |
474-527 |
9.76e-07 |
|
C-terminal helicase domain of the DEAD-like helicases; This hierarchy of DEAD-like helicases is composed of two superfamilies, SF1 and SF2, that share almost identical folds and extensive structural similarity in their catalytic core. Helicases are involved in ATP-dependent RNA or DNA unwinding. Two distinct types of helicases exist, those forming toroidal, predominantly hexameric structures, and those that do not. SF1 and SF2 helicases do not form toroidal structures, while SF3-6 helicases do. Their conserved helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Pssm-ID: 350171 [Multi-domain] Cd Length: 59 Bit Score: 46.39 E-value: 9.76e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 502749986 474 VTLATNMAGRGTDIkldldvhkLGGLAVIGTERHESRRIDLQLMGRSGRRGDPG 527
Cdd:cd09300 8 VLIAVN*ALTGFDA--------PELNTIIVDKNLRSYRGLNQAFGRANRIYTFG 53
|
|
| DEXHc_archSki2 |
cd18028 |
DEXH-box helicase domain of archaeal Ski2-type helicase; Archaeal Ski2-type RNA helicases play ... |
88-217 |
6.57e-05 |
|
DEXH-box helicase domain of archaeal Ski2-type helicase; Archaeal Ski2-type RNA helicases play an important role in RNA degradation, processing and splicing pathways. They belong to the type II DEAD box helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350786 [Multi-domain] Cd Length: 177 Bit Score: 44.25 E-value: 6.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 88 GDGKVAEMKTGEGKTLMSLFVMFIEVMRGNRVHLVTANEYLARRDREEIgQVLEYLGVSVALNeSGLDKAQKKAIYTADV 167
Cdd:cd18028 17 GENLLISIPTASGKTLIAEMAMVNTLLEGGKALYLVPLRALASEKYEEF-KKLEEIGLKVGIS-TGDYDEDDEWLGDYDI 94
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 502749986 168 IYGTASEFgfdylrDNMVRQKEDKVQSgLDFVLIDEADSIlIDEARTPLL 217
Cdd:cd18028 95 IVATYEKF------DSLLRHSPSWLRD-VGVVVVDEIHLI-SDEERGPTL 136
|
|
| DEAD-like_helicase_N |
cd17912 |
N-terminal helicase domain of the DEAD-box helicase superfamily; The DEAD-like helicase ... |
90-132 |
1.82e-03 |
|
N-terminal helicase domain of the DEAD-box helicase superfamily; The DEAD-like helicase superfamily is a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. The N-terminal domain contains the ATP-binding region.
Pssm-ID: 350670 [Multi-domain] Cd Length: 81 Bit Score: 37.88 E-value: 1.82e-03
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 502749986 90 GKVAEMKTGEGKTLMSLFVMFIEVMRGNRVHLVTANEYLARRD 132
Cdd:cd17912 1 NILHLGPTGSGKTLVAIQKIASAMSSGKSVLVVTPTKLLAHEI 43
|
|
| HELICc |
smart00490 |
helicase superfamily c-terminal domain; |
437-524 |
1.94e-03 |
|
helicase superfamily c-terminal domain;
Pssm-ID: 197757 [Multi-domain] Cd Length: 82 Bit Score: 37.96 E-value: 1.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 437 EWISGLLDAAGIPHQVLNAKNHAQEAEIIAKAGKRGMVT--LATNMAGRGTDIKlDLDVhklgglaVIGTERHESRRIDL 514
Cdd:smart00490 1 EELAELLKELGIKVARLHGGLSQEEREEILDKFNNGKIKvlVATDVAERGLDLP-GVDL-------VIIYDLPWSPASYI 72
|
90
....*....|
gi 502749986 515 QLMGRSGRRG 524
Cdd:smart00490 73 QRIGRAGRAG 82
|
|
| DEXDc |
smart00487 |
DEAD-like helicases superfamily; |
92-218 |
2.98e-03 |
|
DEAD-like helicases superfamily;
Pssm-ID: 214692 [Multi-domain] Cd Length: 201 Bit Score: 39.78 E-value: 2.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 92 VAEMKTGEGKTLMSLFVMFIEVMRGN--RVHLVTANEYLARRDREEIGQVLEYLGVSVALNESGLDKAQKKAIYT---AD 166
Cdd:smart00487 28 ILAAPTGSGKTLAALLPALEALKRGKggRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLEsgkTD 107
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 502749986 167 VIYGTasefgFDYLRDNMVRQKEDKvqSGLDFVLIDEADSILiDEARTPLLI 218
Cdd:smart00487 108 ILVTT-----PGRLLDLLENDKLSL--SNVDLVILDEAHRLL-DGGFGDQLE 151
|
|
| SF2_C |
cd18785 |
C-terminal helicase domain of superfamily 2 DEAD/H-box helicases; Superfamily (SF)2 helicases ... |
474-528 |
5.07e-03 |
|
C-terminal helicase domain of superfamily 2 DEAD/H-box helicases; Superfamily (SF)2 helicases include DEAD-box helicases, UvrB, RecG, Ski2, Sucrose Non-Fermenting (SNF) family helicases, and dicer proteins, among others. Similar to SF1 helicases, they do not form toroidal structures like SF3-6 helicases. SF2 helicases are a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Their helicase core is surrounded by C- and N-terminal domains with specific functions such as nucleases, RNA or DNA binding domains, or domains engaged in protein-protein interactions. The core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Pssm-ID: 350172 [Multi-domain] Cd Length: 77 Bit Score: 36.53 E-value: 5.07e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 502749986 474 VTLATNMAGRGTDIkldldvhkLGGLAVIGTERHESRRIDLQLMGRSGRRGDPGF 528
Cdd:cd18785 25 ILVATNVLGEGIDV--------PSLDTVIFFDPPSSAASYIQRVGRAGRGGKDEG 71
|
|
| DEXHc_RecG |
cd17992 |
DEXH/Q-box helicase domain of RecG; ATP-dependent DNA helicase RecG plays a critical role in ... |
98-203 |
7.07e-03 |
|
DEXH/Q-box helicase domain of RecG; ATP-dependent DNA helicase RecG plays a critical role in recombination and DNA repair. It is a member of the DEAD-like helicases superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350750 [Multi-domain] Cd Length: 225 Bit Score: 38.67 E-value: 7.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749986 98 GEGKTLMSLFVMFIEVMRGNRVHLVTANEYLARRDREEIGQVLEYLGVSVALNESGLDKAQKKAIY------TADVIYGT 171
Cdd:cd17992 76 GSGKTVVAALAMLAAVENGYQVALMAPTEILAEQHYDSLKKLLEPLGIRVALLTGSTKAKEKREILekiasgEIDIVIGT 155
|
90 100 110
....*....|....*....|....*....|...
gi 502749986 172 ASEFgfdylrdnmvrqkEDKVQ-SGLDFVLIDE 203
Cdd:cd17992 156 HALI-------------QEDVEfHNLGLVIIDE 175
|
|
| |
