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Conserved domains on  [gi|502750561|ref|WP_012985545|]
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MULTISPECIES: RNase P modulator RnpM [Listeria]

Protein Classification

YlxR family protein( domain architecture ID 10084533)

YlxR family protein may be an RNA-binding protein, similar to Bacillus subtilis YlxR

CATH:  3.30.1230.10
Gene Ontology:  GO:0003723
PubMed:  11679764
SCOP:  4003626

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YlxR cd00279
Ylxr homologs; group of conserved hypothetical bacterial proteins of unknown function; ...
 7-85 2.02e-36

Ylxr homologs; group of conserved hypothetical bacterial proteins of unknown function; structure revealed putative RNA binding cleft; proteins are encoded by an operon that includes other proteins involved in transcription and/or translation


:

Pssm-ID: 238173  Cd Length: 79  Bit Score: 117.82  E-value: 2.02e-36
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 502750561  7 PLRKCIITGERLPKGELLRIAYSKDGALTIDPTGKAPGRGFYIVKNVEACEKAKKKNAIFHQLKMPEQESFYDELIAYV 85
Cdd:cd00279   1 PLRKCIVTGEMKPKKELIRFVAGPEGEVVPDPTGKLPGRGAYVCADRECIEKAKKKKLFNRAFKAKVSDSVYDELIEYV 79
 
Name Accession Description Interval E-value
YlxR cd00279
Ylxr homologs; group of conserved hypothetical bacterial proteins of unknown function; ...
 7-85 2.02e-36

Ylxr homologs; group of conserved hypothetical bacterial proteins of unknown function; structure revealed putative RNA binding cleft; proteins are encoded by an operon that includes other proteins involved in transcription and/or translation


Pssm-ID: 238173  Cd Length: 79  Bit Score: 117.82  E-value: 2.02e-36
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 502750561  7 PLRKCIITGERLPKGELLRIAYSKDGALTIDPTGKAPGRGFYIVKNVEACEKAKKKNAIFHQLKMPEQESFYDELIAYV 85
Cdd:cd00279   1 PLRKCIVTGEMKPKKELIRFVAGPEGEVVPDPTGKLPGRGAYVCADRECIEKAKKKKLFNRAFKAKVSDSVYDELIEYV 79
YlxR COG2740
Nucleoid-associated protein YlxR, Predicted RNA-binding, DUF448 family [General function ...
 1-92 7.27e-36

Nucleoid-associated protein YlxR, Predicted RNA-binding, DUF448 family [General function prediction only];


Pssm-ID: 442042  Cd Length: 93  Bit Score: 116.92  E-value: 7.27e-36
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502750561  1 MRNKKIPLRKCIITGERLPKGELLRIAYSKDGALTIDPTGKAPGRGFYIVKNVEACEKAKKKNAIFHQLKMPEQESFYDE 80
Cdd:COG2740   2 MKAKKIPLRTCIGCRERKPKKELIRIVRSPDGEVVPDPTGKLPGRGAYLCPDRECLEKAVKKRAFARALKAKVPEDLYDE 81

                        90
                ....*....|..
gi 502750561 81 LIAYVKSLEEPT 92
Cdd:COG2740  82 LEELLERRALRR 93
YlxR pfam04296
Protein of unknown function (DUF448); The YlxR family has been demonstrated to regulate ...
 9-83 1.63e-29

Protein of unknown function (DUF448); The YlxR family has been demonstrated to regulate metabolic gene expression.


Pssm-ID: 427847  Cd Length: 75  Bit Score: 100.21  E-value: 1.63e-29
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 502750561   9 RKCIITGERLPKGELLRIAYSKDGALTIDPTGKAPGRGFYIVKNVEACEKAKKKNAIFHQLKMPEQESFYDELIA 83
Cdd:pfam04296  1 RKCIGCREMKPKKELIRIVRTPDGEVVLDPTGKLPGRGAYICPDRECLEKAKKKKALERALKTKVPDEVYEELEA 75
PRK09190 PRK09190
RNA-binding protein;
2-64 2.03e-12

RNA-binding protein;


Pssm-ID: 236401 [Multi-domain]  Cd Length: 220  Bit Score: 59.97  E-value: 2.03e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 502750561   2 RNKKIPLRKCIITGERLPKGELLRIAYSKDGALTIDPTGKAPGRGFYIVKNVEACEKAKKKNA 64
Cdd:PRK09190  10 RDRRGNERRCIVTREVGPPDELIRFVVGPDGQVVPDLKRKLPGRGCWVSADRAAVEKAVAKKL 72
 
Name Accession Description Interval E-value
YlxR cd00279
Ylxr homologs; group of conserved hypothetical bacterial proteins of unknown function; ...
 7-85 2.02e-36

Ylxr homologs; group of conserved hypothetical bacterial proteins of unknown function; structure revealed putative RNA binding cleft; proteins are encoded by an operon that includes other proteins involved in transcription and/or translation


Pssm-ID: 238173  Cd Length: 79  Bit Score: 117.82  E-value: 2.02e-36
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 502750561  7 PLRKCIITGERLPKGELLRIAYSKDGALTIDPTGKAPGRGFYIVKNVEACEKAKKKNAIFHQLKMPEQESFYDELIAYV 85
Cdd:cd00279   1 PLRKCIVTGEMKPKKELIRFVAGPEGEVVPDPTGKLPGRGAYVCADRECIEKAKKKKLFNRAFKAKVSDSVYDELIEYV 79
YlxR COG2740
Nucleoid-associated protein YlxR, Predicted RNA-binding, DUF448 family [General function ...
 1-92 7.27e-36

Nucleoid-associated protein YlxR, Predicted RNA-binding, DUF448 family [General function prediction only];


Pssm-ID: 442042  Cd Length: 93  Bit Score: 116.92  E-value: 7.27e-36
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502750561  1 MRNKKIPLRKCIITGERLPKGELLRIAYSKDGALTIDPTGKAPGRGFYIVKNVEACEKAKKKNAIFHQLKMPEQESFYDE 80
Cdd:COG2740   2 MKAKKIPLRTCIGCRERKPKKELIRIVRSPDGEVVPDPTGKLPGRGAYLCPDRECLEKAVKKRAFARALKAKVPEDLYDE 81

                        90
                ....*....|..
gi 502750561 81 LIAYVKSLEEPT 92
Cdd:COG2740  82 LEELLERRALRR 93
YlxR pfam04296
Protein of unknown function (DUF448); The YlxR family has been demonstrated to regulate ...
 9-83 1.63e-29

Protein of unknown function (DUF448); The YlxR family has been demonstrated to regulate metabolic gene expression.


Pssm-ID: 427847  Cd Length: 75  Bit Score: 100.21  E-value: 1.63e-29
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 502750561   9 RKCIITGERLPKGELLRIAYSKDGALTIDPTGKAPGRGFYIVKNVEACEKAKKKNAIFHQLKMPEQESFYDELIA 83
Cdd:pfam04296  1 RKCIGCREMKPKKELIRIVRTPDGEVVLDPTGKLPGRGAYICPDRECLEKAKKKKALERALKTKVPDEVYEELEA 75
PRK09190 PRK09190
RNA-binding protein;
2-64 2.03e-12

RNA-binding protein;


Pssm-ID: 236401 [Multi-domain]  Cd Length: 220  Bit Score: 59.97  E-value: 2.03e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 502750561   2 RNKKIPLRKCIITGERLPKGELLRIAYSKDGALTIDPTGKAPGRGFYIVKNVEACEKAKKKNA 64
Cdd:PRK09190  10 RDRRGNERRCIVTREVGPPDELIRFVVGPDGQVVPDLKRKLPGRGCWVSADRAAVEKAVAKKL 72
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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