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Conserved domains on  [gi|502780898|ref|WP_013015874|]
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DUF4229 domain-containing protein [Stackebrandtia nassauensis]

Protein Classification

DUF4229 domain-containing protein( domain architecture ID 10623745)

DUF4229 domain-containing protein is an integral membrane protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4229 pfam14012
Protein of unknown function (DUF4229); This family of integral membrane proteins is ...
 5-65 1.81e-08

Protein of unknown function (DUF4229); This family of integral membrane proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 95 and 122 amino acids in length.


:

Pssm-ID: 433642  Cd Length: 67  Bit Score: 46.00  E-value: 1.81e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 502780898   5 WKFTLGRVGLCVLIGALLWPTG------LHILVIAMAALLGSFLLSFVVLKKWRTEMLADVDEAVKR 65
Cdd:pfam14012  1 LLYTLARLALFAVLTAVIWGVGrligvpVPLLVAALLALVVAMPLSMVLLKKLRDRAAAQVAARDER 67
 
Name Accession Description Interval E-value
DUF4229 pfam14012
Protein of unknown function (DUF4229); This family of integral membrane proteins is ...
 5-65 1.81e-08

Protein of unknown function (DUF4229); This family of integral membrane proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 95 and 122 amino acids in length.


Pssm-ID: 433642  Cd Length: 67  Bit Score: 46.00  E-value: 1.81e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 502780898   5 WKFTLGRVGLCVLIGALLWPTG------LHILVIAMAALLGSFLLSFVVLKKWRTEMLADVDEAVKR 65
Cdd:pfam14012  1 LLYTLARLALFAVLTAVIWGVGrligvpVPLLVAALLALVVAMPLSMVLLKKLRDRAAAQVAARDER 67
PRK09040 PRK09040
hypothetical protein; Provisional
 34-79 2.26e-03

hypothetical protein; Provisional


Pssm-ID: 181620 [Multi-domain]  Cd Length: 214  Bit Score: 34.61  E-value: 2.26e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 502780898  34 MAALLGSFLLSFVVLKKWRTEMLADVDEAVKRRRA---QKEELRSALAG 79
Cdd:PRK09040  22 MSVLLGAFVLILVGVIGVQLELSSKLEAEVKQRQAeaqRRKTLEQALAG 70
 
Name Accession Description Interval E-value
DUF4229 pfam14012
Protein of unknown function (DUF4229); This family of integral membrane proteins is ...
 5-65 1.81e-08

Protein of unknown function (DUF4229); This family of integral membrane proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 95 and 122 amino acids in length.


Pssm-ID: 433642  Cd Length: 67  Bit Score: 46.00  E-value: 1.81e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 502780898   5 WKFTLGRVGLCVLIGALLWPTG------LHILVIAMAALLGSFLLSFVVLKKWRTEMLADVDEAVKR 65
Cdd:pfam14012  1 LLYTLARLALFAVLTAVIWGVGrligvpVPLLVAALLALVVAMPLSMVLLKKLRDRAAAQVAARDER 67
PRK09040 PRK09040
hypothetical protein; Provisional
 34-79 2.26e-03

hypothetical protein; Provisional


Pssm-ID: 181620 [Multi-domain]  Cd Length: 214  Bit Score: 34.61  E-value: 2.26e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 502780898  34 MAALLGSFLLSFVVLKKWRTEMLADVDEAVKRRRA---QKEELRSALAG 79
Cdd:PRK09040  22 MSVLLGAFVLILVGVIGVQLELSSKLEAEVKQRQAeaqRRKTLEQALAG 70
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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