NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|502784775|ref|WP_013019751|]
View 

LytR C-terminal domain-containing protein [Stackebrandtia nassauensis]

Protein Classification

LytR C-terminal domain-containing protein( domain architecture ID 15441974)

LytR C-terminal domain-containing protein

CATH:  3.30.70.2390
PubMed:  21964069

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
LytR_C pfam13399
LytR cell envelope-related transcriptional attenuator; This family appears at the C-terminus ...
 57-139 2.11e-08

LytR cell envelope-related transcriptional attenuator; This family appears at the C-terminus of members of the LytR_cpsA_psr, pfam03816, family


:

Pssm-ID: 463868  Cd Length: 87  Bit Score: 49.32  E-value: 2.11e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502784775   57 VSVKVLNATNTSDLAGSAAGSLKEYGFKIEDTGESKKDEGKSSveIHYGPKALGGGHLLRSYFADDTAVFDLKNENDFVE 136
Cdd:pfam13399   1 VRVAVLNGTGVPGLAARVADALRAAGFNVGEVGNAGNALEKTT--IIYGAAAAAAARALAAALGGGEIVVDDVLVASTGD 78


                  ...
gi 502784775  137 IIL 139
Cdd:pfam13399  79 VTV 81
LytR_C super family cl16268
LytR cell envelope-related transcriptional attenuator; This family appears at the C-terminus ...
 8-83 2.97e-05

LytR cell envelope-related transcriptional attenuator; This family appears at the C-terminus of members of the LytR_cpsA_psr, pfam03816, family


The actual alignment was detected with superfamily member NF035953:

Pssm-ID: 472888  Cd Length: 211  Bit Score: 42.59  E-value: 2.97e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502784775   8 ALIVVGVLILIAVsTSWYAIANDSQTAAGRENC--------EPGDIPV----------DVTLPEPHQVSVKVLNATNTSD 69
Cdd:NF035953  15 ALILVAVLAVVAV-VVWVVALTSPDDVAEAVACnppppaapEAPPPPLgtqvsrdamlDVAPAPLSDTKVRVLNASGQRG 93

                         90
                 ....*....|....
gi 502784775  70 LAGSAAGSLKEYGF 83
Cdd:NF035953  94 QAGEVADDLRDLGF 107
 
Name Accession Description Interval E-value
LytR_C pfam13399
LytR cell envelope-related transcriptional attenuator; This family appears at the C-terminus ...
 57-139 2.11e-08

LytR cell envelope-related transcriptional attenuator; This family appears at the C-terminus of members of the LytR_cpsA_psr, pfam03816, family


Pssm-ID: 463868  Cd Length: 87  Bit Score: 49.32  E-value: 2.11e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502784775   57 VSVKVLNATNTSDLAGSAAGSLKEYGFKIEDTGESKKDEGKSSveIHYGPKALGGGHLLRSYFADDTAVFDLKNENDFVE 136
Cdd:pfam13399   1 VRVAVLNGTGVPGLAARVADALRAAGFNVGEVGNAGNALEKTT--IIYGAAAAAAARALAAALGGGEIVVDDVLVASTGD 78


                  ...
gi 502784775  137 IIL 139
Cdd:pfam13399  79 VTV 81
integrity_Cei NF035953
envelope integrity protein Cei; Cei (cell envelope integrity), as described for the founding ...
 8-83 2.97e-05

envelope integrity protein Cei; Cei (cell envelope integrity), as described for the founding member Rv2700 from Mycobacterium tuberculosis, is a transmembrane protein with an extracellular LytR_C domain. It lacks any DNA-binding domain and is not a transcriptional regulator. It shares homology to C-terminal regions present in some members of the LytR-CpsA-Psr family, a family in which some characterized members transfer teichoic acids to from carriers to mature peptidoglycan.


Pssm-ID: 468277  Cd Length: 211  Bit Score: 42.59  E-value: 2.97e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502784775   8 ALIVVGVLILIAVsTSWYAIANDSQTAAGRENC--------EPGDIPV----------DVTLPEPHQVSVKVLNATNTSD 69
Cdd:NF035953  15 ALILVAVLAVVAV-VVWVVALTSPDDVAEAVACnppppaapEAPPPPLgtqvsrdamlDVAPAPLSDTKVRVLNASGQRG 93

                         90
                 ....*....|....
gi 502784775  70 LAGSAAGSLKEYGF 83
Cdd:NF035953  94 QAGEVADDLRDLGF 107
 
Name Accession Description Interval E-value
LytR_C pfam13399
LytR cell envelope-related transcriptional attenuator; This family appears at the C-terminus ...
 57-139 2.11e-08

LytR cell envelope-related transcriptional attenuator; This family appears at the C-terminus of members of the LytR_cpsA_psr, pfam03816, family


Pssm-ID: 463868  Cd Length: 87  Bit Score: 49.32  E-value: 2.11e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502784775   57 VSVKVLNATNTSDLAGSAAGSLKEYGFKIEDTGESKKDEGKSSveIHYGPKALGGGHLLRSYFADDTAVFDLKNENDFVE 136
Cdd:pfam13399   1 VRVAVLNGTGVPGLAARVADALRAAGFNVGEVGNAGNALEKTT--IIYGAAAAAAARALAAALGGGEIVVDDVLVASTGD 78


                  ...
gi 502784775  137 IIL 139
Cdd:pfam13399  79 VTV 81
integrity_Cei NF035953
envelope integrity protein Cei; Cei (cell envelope integrity), as described for the founding ...
 8-83 2.97e-05

envelope integrity protein Cei; Cei (cell envelope integrity), as described for the founding member Rv2700 from Mycobacterium tuberculosis, is a transmembrane protein with an extracellular LytR_C domain. It lacks any DNA-binding domain and is not a transcriptional regulator. It shares homology to C-terminal regions present in some members of the LytR-CpsA-Psr family, a family in which some characterized members transfer teichoic acids to from carriers to mature peptidoglycan.


Pssm-ID: 468277  Cd Length: 211  Bit Score: 42.59  E-value: 2.97e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502784775   8 ALIVVGVLILIAVsTSWYAIANDSQTAAGRENC--------EPGDIPV----------DVTLPEPHQVSVKVLNATNTSD 69
Cdd:NF035953  15 ALILVAVLAVVAV-VVWVVALTSPDDVAEAVACnppppaapEAPPPPLgtqvsrdamlDVAPAPLSDTKVRVLNASGQRG 93

                         90
                 ....*....|....
gi 502784775  70 LAGSAAGSLKEYGF 83
Cdd:NF035953  94 QAGEVADDLRDLGF 107
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH