|
Name |
Accession |
Description |
Interval |
E-value |
| PRK01318 |
PRK01318 |
membrane protein insertase; Provisional |
2-558 |
0e+00 |
|
membrane protein insertase; Provisional
Pssm-ID: 234942 [Multi-domain] Cd Length: 521 Bit Score: 624.20 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 2 DDKKNIILAVVLTAAILFGWpyvaQYFFPAANPPATKieggkttpltpsgaapaaegaaairdlalVLKDSPRVAIRTPK 81
Cdd:PRK01318 1 MDNKRLLLAIALSFVIFLGW----QYWQQDKAQAAAQ-----------------------------APAPQARITVETDV 47
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 82 ITGSINLKGARIDDIVLPTYKETIaKSSPAIRLYSPSgTKHAYFAGFGWQG----EGVKTPDGgTVWTASAKELT----- 152
Cdd:PRK01318 48 LRLSIDTKGGRIDDLLLKKYKETL-DSSPPVVLLSPS-TEHPYFAQSGLTGadgpDNVPNPDR-TLYTADGDSLVladgq 124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 153 PTSPVTLSWNNGAGQTFEIRYSIDEN-YMITAQQKVSNGGAGAVGVKSYGYVSRATPSaDPDTWTIHVGPMGVFNGAaNY 231
Cdd:PRK01318 125 NELPVTLTWTNGNGLTFTKTYTLDRGdYMFTVEYSVNNNSGAPVNLSPYGQLKRTGSS-NFASYTFHGGAIGTPDEK-YE 202
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 232 DVNYSDLEKGPATQSfqsTGGWIGFTDKYWLSALIPDQKAAfTGQMRKGAGTQFQTDMSLAPIMVAPGKAVTQTNRLFVG 311
Cdd:PRK01318 203 KYTYKDIDDNLNISS---KGGWVAILDKYFATALIPQNGQN-NFYSKNLGNGLYQVGFKSPPVTVAPGQSASTTARLYAG 278
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 312 AKEVKTLEAYQDagvPLFDRAIDWGWFYWFEKPIFALLHWLFEHIGNFGVAIICLTFVVRGLMFPVAQRQFASMAAMRAV 391
Cdd:PRK01318 279 PKEVKLLAKEIA---PGLDLAVDYGWLWFITKPLFWLLDFLHSFVGNWGWAIILLTIIVKLLLFPLTYKSYVSMAKMKVL 355
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 392 QPKMKALQEKYKDDKPRLQQEMMELYKREKVNPLAGCLPIFIQIPIFFALYKVLQLTIEMRHQPFVLWIKDLSAPDPLHI 471
Cdd:PRK01318 356 QPKMQELKEKYKDDPQKMQQEMMELYKKEKVNPLGGCLPILIQIPIFFALYKVLLVSIELRHAPFIGWIHDLSAPDPYFI 435
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 472 vnlfgllpftppafLGIGVLALLLGISMYFQFKLNPAQMDPMQQQVFAIMPWMMMFIMAPFAAGLLVYWITNNCLSMLQQ 551
Cdd:PRK01318 436 --------------LHIGLLPILMGITMFLQQKLNPTPTDPMQAKIMKFMPLIFTFFFLSFPAGLVLYWIVNNLLTIIQQ 501
|
....*..
gi 502804295 552 WWLYKRH 558
Cdd:PRK01318 502 YLINRRL 508
|
|
| YidC |
COG0706 |
Membrane protein insertase Oxa1/YidC/SpoIIIJ [Cell wall/membrane/envelope biogenesis]; |
333-559 |
1.14e-106 |
|
Membrane protein insertase Oxa1/YidC/SpoIIIJ [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440470 [Multi-domain] Cd Length: 212 Bit Score: 318.60 E-value: 1.14e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 333 IDWGWFYWFEKPIFALLHWLFEHIGNFGVAIICLTFVVRGLMFPVAQRQFASMAAMRAVQPKMKALQEKYKDDKPRLQQE 412
Cdd:COG0706 1 IDYGWFGFIAKPLFWLLNFLHSLVGNWGLAIILLTLIVRLLLFPLTVKQYKSMAKMQELQPELKEIQEKYKDDPQKLQQE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 413 MMELYKREKVNPLAGCLPIFIQIPIFFALYKVLQLTIEMRHQPFvLWIKDLSAPDPLHIvnlfgllpftppaflgigVLA 492
Cdd:COG0706 81 MMKLYKEEGVNPLGGCLPMLIQMPIFIALYRVLRNSIELRHAPF-LGIPDLSAPDPYYI------------------FLP 141
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 502804295 493 LLLGISMYFQFKLNPAQ-MDPMQQQVFAIMPWMMMFIMAPFAAGLLVYWITNNCLSMLQQWWLYKRHP 559
Cdd:COG0706 142 ILMGVTMFLQQKLNPAPaQDPQQKKMMYIMPLMFLFFFLSFPAGLVLYWVVSNLLTIGQQLIINRRLD 209
|
|
| yidC_nterm |
TIGR03593 |
membrane protein insertase, YidC/Oxa1 family, N-terminal domain; Essentially all bacteria have ... |
5-357 |
9.55e-93 |
|
membrane protein insertase, YidC/Oxa1 family, N-terminal domain; Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274666 Cd Length: 366 Bit Score: 288.85 E-value: 9.55e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 5 KNIILAVVLTAAILFGWPYVAQYFFPAANPPATKIE----GGKTTPLTPSGAAPAAEGAAAIRDLALVLKDSPRVAIRTP 80
Cdd:TIGR03593 2 RRLILAIALSFVIFLLWQAWQSDPGPPPPKPPAAAQeasaASATAAATSAAAPAAADAPSAAAAADAAAATAKRITVETD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 81 KITGSINLKGARIDDIVLPTYKETIAKSSPAIRLYSpSGTKHAYFAGFGWQGEGVKT---PDGGTVWTASAKE--LTP-T 154
Cdd:TIGR03593 82 VLRASISTKGGDIDSLELKKYKETLDKDSPPVLLLS-DGAERLYVAQSGLIGANGADlalPGHRTVWQAEGGEytLTPgQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 155 SPVTLSWNNGAGQTFEIRYSIDEN-YMITAQQKVSNGGAGAVGVKSYGYVSRATPSADPDTWTIHVGPMGVF--NGAANY 231
Cdd:TIGR03593 161 LPVTLTWDNSNGVTVTKTYTFDRDsYLIDVEYKVTNNGDAPVSLSLYGQLKRDLSPTEKSTYFLHETFTGAAyyTDGEKY 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 232 -DVNYSDLEKGPATQSFQSTGGWIGFTDKYWLSALIPDQKAAFTGQM---RKGAGTQFQTDMSLAPIMVAPGKAVTQTNR 307
Cdd:TIGR03593 241 qKVSFKDIEKKKLNVETKGGAGWVGMLQHYFASAWIPPAGSDGTTAFyygRKLGNNVYIAGFVSPVVTVAPGQSATIKSR 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 502804295 308 LFVGAKEVKTLEAYQdagvPLFDRAIDWGWFYWFEKPIFALLHWLFEHIG 357
Cdd:TIGR03593 321 LYAGPKEQDVLKAIA----PGLDLAVDYGWLWFIAKPLFWLLDFFHSLVG 366
|
|
| 60KD_IMP |
pfam02096 |
60Kd inner membrane protein; |
359-556 |
8.76e-90 |
|
60Kd inner membrane protein;
Pssm-ID: 460443 [Multi-domain] Cd Length: 187 Bit Score: 274.35 E-value: 8.76e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 359 FGVAIICLTFVVRGLMFPVAQRQFASMAAMRAVQPKMKALQEKYKDDKPRLQQEMMELYKREKVNPLAGCLPIFIQIPIF 438
Cdd:pfam02096 1 YGLAIILLTILIKLILFPLTYKQYKSMAKMQELQPEMKEIQEKYKDDRQKLQQEMMKLYKKEGVNPLGGCLPMLIQMPIF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 439 FALYKVLQLTIEMRHQPFVLWIKDLSAPDPLHIVNLFgllpftppaflgigVLALLLGISMYFQFKLNPA-QMDPMQQQV 517
Cdd:pfam02096 81 IALYRVLRNSIELRHAPFFLWIADLSAPDPISILHYY--------------ILPILMGVTMFLQQKLTPApQDQPPQMKM 146
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 502804295 518 FA--IMPWMMMFIMAPFAAGLLVYWITNNCLSMLQQWWLYK 556
Cdd:pfam02096 147 MMlyFMPLMFLFFFLNFPAGLVLYWVVSNLLSIGQQLIINR 187
|
|
| 5TM_YidC_Alb3 |
cd20070 |
Five transmembrane core domain of membrane protein insertase YidC, Alb3, and similar proteins; ... |
360-556 |
7.52e-87 |
|
Five transmembrane core domain of membrane protein insertase YidC, Alb3, and similar proteins; This group is composed of the bacterial and chloroplastic members of the YidC/Oxa1/Alb3 protein family of insertases, including bacterial YidC, and chloroplastic ALBINO3 (Alb3) and Alb3-like proteins such as ALBINO3-like protein 1 (also called Alb4). Membrane protein insertase YidC, also called foldase YidC or membrane integrase YidC, facilitates proper folding, insertion, and assembly of inner membrane proteins and complexes. Depending on the nature of the substrate, YidC functions in a Sec-independent (YidC only) or a Sec-dependent manner as part of a complex containing YidC, the SecYEG channel, and SecDFYajC. YidC from Gram-negative bacteria contains an extra transmembrane segment (TM1) at the N-terminus and a large periplasmic domain, located between TM1 and TM2, that adopts a beta-super sandwich fold that is found in sugar-binding proteins such as galactose mutarotase. Alb3 and Alb3-like proteins are required for the post-translational insertion of the light-harvesting chlorophyll-binding proteins (LHCPs) into the chloroplast thylakoid membrane. Alb3 acts independently and may also function cooperatively with the thylakoid cpSecYE translocase to insert proteins co-translationally into the thylakoid membrane, similar to bacterial YidC that can function with the SecYEG translocase. YidC/Oxa1/Alb3 family insertases contain a core domain of five transmembrane (5TM) segments that is essential to insertase function.
Pssm-ID: 410994 [Multi-domain] Cd Length: 181 Bit Score: 266.55 E-value: 7.52e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 360 GVAIICLTFVVRGLMFPVAQRQFASMAAMRAVQPKMKALQEKYKDDKPRLQQEMMELYKREKVNPLAGCLPIFIQIPIFF 439
Cdd:cd20070 1 GLAIILLTILIRLLLLPLTLKQYKSMKKMQELQPKIKEIQEKYKDDKQKLQQEMMKLYKEHGVNPLGGCLPLLIQMPIFI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 440 ALYKVLQLTIEMRHQPFVLWIKDLSAPDPLHIvnlfgllpftppaflgigvLALLLGISMYFQFKLNPAQMD---PMQQQ 516
Cdd:cd20070 81 ALYQVLRNSIELRGAPFLWWILDLSAPDPYYI-------------------LPILMGVTMFLQQKLTPTPTDdqaPQQKM 141
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 502804295 517 VFAIMPWMMMFIMAPFAAGLLVYWITNNCLSMLQQWWLYK 556
Cdd:cd20070 142 MMYFMPVMFTFIFLSFPSGLVLYWLVSNLFSIIQQLIINK 181
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK01318 |
PRK01318 |
membrane protein insertase; Provisional |
2-558 |
0e+00 |
|
membrane protein insertase; Provisional
Pssm-ID: 234942 [Multi-domain] Cd Length: 521 Bit Score: 624.20 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 2 DDKKNIILAVVLTAAILFGWpyvaQYFFPAANPPATKieggkttpltpsgaapaaegaaairdlalVLKDSPRVAIRTPK 81
Cdd:PRK01318 1 MDNKRLLLAIALSFVIFLGW----QYWQQDKAQAAAQ-----------------------------APAPQARITVETDV 47
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 82 ITGSINLKGARIDDIVLPTYKETIaKSSPAIRLYSPSgTKHAYFAGFGWQG----EGVKTPDGgTVWTASAKELT----- 152
Cdd:PRK01318 48 LRLSIDTKGGRIDDLLLKKYKETL-DSSPPVVLLSPS-TEHPYFAQSGLTGadgpDNVPNPDR-TLYTADGDSLVladgq 124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 153 PTSPVTLSWNNGAGQTFEIRYSIDEN-YMITAQQKVSNGGAGAVGVKSYGYVSRATPSaDPDTWTIHVGPMGVFNGAaNY 231
Cdd:PRK01318 125 NELPVTLTWTNGNGLTFTKTYTLDRGdYMFTVEYSVNNNSGAPVNLSPYGQLKRTGSS-NFASYTFHGGAIGTPDEK-YE 202
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 232 DVNYSDLEKGPATQSfqsTGGWIGFTDKYWLSALIPDQKAAfTGQMRKGAGTQFQTDMSLAPIMVAPGKAVTQTNRLFVG 311
Cdd:PRK01318 203 KYTYKDIDDNLNISS---KGGWVAILDKYFATALIPQNGQN-NFYSKNLGNGLYQVGFKSPPVTVAPGQSASTTARLYAG 278
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 312 AKEVKTLEAYQDagvPLFDRAIDWGWFYWFEKPIFALLHWLFEHIGNFGVAIICLTFVVRGLMFPVAQRQFASMAAMRAV 391
Cdd:PRK01318 279 PKEVKLLAKEIA---PGLDLAVDYGWLWFITKPLFWLLDFLHSFVGNWGWAIILLTIIVKLLLFPLTYKSYVSMAKMKVL 355
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 392 QPKMKALQEKYKDDKPRLQQEMMELYKREKVNPLAGCLPIFIQIPIFFALYKVLQLTIEMRHQPFVLWIKDLSAPDPLHI 471
Cdd:PRK01318 356 QPKMQELKEKYKDDPQKMQQEMMELYKKEKVNPLGGCLPILIQIPIFFALYKVLLVSIELRHAPFIGWIHDLSAPDPYFI 435
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 472 vnlfgllpftppafLGIGVLALLLGISMYFQFKLNPAQMDPMQQQVFAIMPWMMMFIMAPFAAGLLVYWITNNCLSMLQQ 551
Cdd:PRK01318 436 --------------LHIGLLPILMGITMFLQQKLNPTPTDPMQAKIMKFMPLIFTFFFLSFPAGLVLYWIVNNLLTIIQQ 501
|
....*..
gi 502804295 552 WWLYKRH 558
Cdd:PRK01318 502 YLINRRL 508
|
|
| YidC |
COG0706 |
Membrane protein insertase Oxa1/YidC/SpoIIIJ [Cell wall/membrane/envelope biogenesis]; |
333-559 |
1.14e-106 |
|
Membrane protein insertase Oxa1/YidC/SpoIIIJ [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440470 [Multi-domain] Cd Length: 212 Bit Score: 318.60 E-value: 1.14e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 333 IDWGWFYWFEKPIFALLHWLFEHIGNFGVAIICLTFVVRGLMFPVAQRQFASMAAMRAVQPKMKALQEKYKDDKPRLQQE 412
Cdd:COG0706 1 IDYGWFGFIAKPLFWLLNFLHSLVGNWGLAIILLTLIVRLLLFPLTVKQYKSMAKMQELQPELKEIQEKYKDDPQKLQQE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 413 MMELYKREKVNPLAGCLPIFIQIPIFFALYKVLQLTIEMRHQPFvLWIKDLSAPDPLHIvnlfgllpftppaflgigVLA 492
Cdd:COG0706 81 MMKLYKEEGVNPLGGCLPMLIQMPIFIALYRVLRNSIELRHAPF-LGIPDLSAPDPYYI------------------FLP 141
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 502804295 493 LLLGISMYFQFKLNPAQ-MDPMQQQVFAIMPWMMMFIMAPFAAGLLVYWITNNCLSMLQQWWLYKRHP 559
Cdd:COG0706 142 ILMGVTMFLQQKLNPAPaQDPQQKKMMYIMPLMFLFFFLSFPAGLVLYWVVSNLLTIGQQLIINRRLD 209
|
|
| yidC_nterm |
TIGR03593 |
membrane protein insertase, YidC/Oxa1 family, N-terminal domain; Essentially all bacteria have ... |
5-357 |
9.55e-93 |
|
membrane protein insertase, YidC/Oxa1 family, N-terminal domain; Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274666 Cd Length: 366 Bit Score: 288.85 E-value: 9.55e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 5 KNIILAVVLTAAILFGWPYVAQYFFPAANPPATKIE----GGKTTPLTPSGAAPAAEGAAAIRDLALVLKDSPRVAIRTP 80
Cdd:TIGR03593 2 RRLILAIALSFVIFLLWQAWQSDPGPPPPKPPAAAQeasaASATAAATSAAAPAAADAPSAAAAADAAAATAKRITVETD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 81 KITGSINLKGARIDDIVLPTYKETIAKSSPAIRLYSpSGTKHAYFAGFGWQGEGVKT---PDGGTVWTASAKE--LTP-T 154
Cdd:TIGR03593 82 VLRASISTKGGDIDSLELKKYKETLDKDSPPVLLLS-DGAERLYVAQSGLIGANGADlalPGHRTVWQAEGGEytLTPgQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 155 SPVTLSWNNGAGQTFEIRYSIDEN-YMITAQQKVSNGGAGAVGVKSYGYVSRATPSADPDTWTIHVGPMGVF--NGAANY 231
Cdd:TIGR03593 161 LPVTLTWDNSNGVTVTKTYTFDRDsYLIDVEYKVTNNGDAPVSLSLYGQLKRDLSPTEKSTYFLHETFTGAAyyTDGEKY 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 232 -DVNYSDLEKGPATQSFQSTGGWIGFTDKYWLSALIPDQKAAFTGQM---RKGAGTQFQTDMSLAPIMVAPGKAVTQTNR 307
Cdd:TIGR03593 241 qKVSFKDIEKKKLNVETKGGAGWVGMLQHYFASAWIPPAGSDGTTAFyygRKLGNNVYIAGFVSPVVTVAPGQSATIKSR 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 502804295 308 LFVGAKEVKTLEAYQdagvPLFDRAIDWGWFYWFEKPIFALLHWLFEHIG 357
Cdd:TIGR03593 321 LYAGPKEQDVLKAIA----PGLDLAVDYGWLWFIAKPLFWLLDFFHSLVG 366
|
|
| 60KD_IMP |
pfam02096 |
60Kd inner membrane protein; |
359-556 |
8.76e-90 |
|
60Kd inner membrane protein;
Pssm-ID: 460443 [Multi-domain] Cd Length: 187 Bit Score: 274.35 E-value: 8.76e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 359 FGVAIICLTFVVRGLMFPVAQRQFASMAAMRAVQPKMKALQEKYKDDKPRLQQEMMELYKREKVNPLAGCLPIFIQIPIF 438
Cdd:pfam02096 1 YGLAIILLTILIKLILFPLTYKQYKSMAKMQELQPEMKEIQEKYKDDRQKLQQEMMKLYKKEGVNPLGGCLPMLIQMPIF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 439 FALYKVLQLTIEMRHQPFVLWIKDLSAPDPLHIVNLFgllpftppaflgigVLALLLGISMYFQFKLNPA-QMDPMQQQV 517
Cdd:pfam02096 81 IALYRVLRNSIELRHAPFFLWIADLSAPDPISILHYY--------------ILPILMGVTMFLQQKLTPApQDQPPQMKM 146
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 502804295 518 FA--IMPWMMMFIMAPFAAGLLVYWITNNCLSMLQQWWLYK 556
Cdd:pfam02096 147 MMlyFMPLMFLFFFLNFPAGLVLYWVVSNLLSIGQQLIINR 187
|
|
| 5TM_YidC_Alb3 |
cd20070 |
Five transmembrane core domain of membrane protein insertase YidC, Alb3, and similar proteins; ... |
360-556 |
7.52e-87 |
|
Five transmembrane core domain of membrane protein insertase YidC, Alb3, and similar proteins; This group is composed of the bacterial and chloroplastic members of the YidC/Oxa1/Alb3 protein family of insertases, including bacterial YidC, and chloroplastic ALBINO3 (Alb3) and Alb3-like proteins such as ALBINO3-like protein 1 (also called Alb4). Membrane protein insertase YidC, also called foldase YidC or membrane integrase YidC, facilitates proper folding, insertion, and assembly of inner membrane proteins and complexes. Depending on the nature of the substrate, YidC functions in a Sec-independent (YidC only) or a Sec-dependent manner as part of a complex containing YidC, the SecYEG channel, and SecDFYajC. YidC from Gram-negative bacteria contains an extra transmembrane segment (TM1) at the N-terminus and a large periplasmic domain, located between TM1 and TM2, that adopts a beta-super sandwich fold that is found in sugar-binding proteins such as galactose mutarotase. Alb3 and Alb3-like proteins are required for the post-translational insertion of the light-harvesting chlorophyll-binding proteins (LHCPs) into the chloroplast thylakoid membrane. Alb3 acts independently and may also function cooperatively with the thylakoid cpSecYE translocase to insert proteins co-translationally into the thylakoid membrane, similar to bacterial YidC that can function with the SecYEG translocase. YidC/Oxa1/Alb3 family insertases contain a core domain of five transmembrane (5TM) segments that is essential to insertase function.
Pssm-ID: 410994 [Multi-domain] Cd Length: 181 Bit Score: 266.55 E-value: 7.52e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 360 GVAIICLTFVVRGLMFPVAQRQFASMAAMRAVQPKMKALQEKYKDDKPRLQQEMMELYKREKVNPLAGCLPIFIQIPIFF 439
Cdd:cd20070 1 GLAIILLTILIRLLLLPLTLKQYKSMKKMQELQPKIKEIQEKYKDDKQKLQQEMMKLYKEHGVNPLGGCLPLLIQMPIFI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 440 ALYKVLQLTIEMRHQPFVLWIKDLSAPDPLHIvnlfgllpftppaflgigvLALLLGISMYFQFKLNPAQMD---PMQQQ 516
Cdd:cd20070 81 ALYQVLRNSIELRGAPFLWWILDLSAPDPYYI-------------------LPILMGVTMFLQQKLTPTPTDdqaPQQKM 141
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 502804295 517 VFAIMPWMMMFIMAPFAAGLLVYWITNNCLSMLQQWWLYK 556
Cdd:cd20070 142 MMYFMPVMFTFIFLSFPSGLVLYWLVSNLFSIIQQLIINK 181
|
|
| yidC_oxa1_cterm |
TIGR03592 |
membrane protein insertase, YidC/Oxa1 family, C-terminal domain; This model describes ... |
358-554 |
1.43e-86 |
|
membrane protein insertase, YidC/Oxa1 family, C-terminal domain; This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274665 [Multi-domain] Cd Length: 179 Bit Score: 265.88 E-value: 1.43e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 358 NFGVAIICLTFVVRGLMFPVAQRQFASMAAMRAVQPKMKALQEKYKDDKPRLQQEMMELYKREKVNPLAGCLPIFIQIPI 437
Cdd:TIGR03592 1 NWGLAIILLTIIVRLILLPLTLKQYKSMRKMQELQPKLKEIQEKYKEDPQKLQQEMMKLYKEEGVNPLGGCLPLLIQMPI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 438 FFALYKVLQLTIEMRHQPFvLWIKDLSAPDPLHIvnlfgllpftppaflgigvLALLLGISMYFQFKLNPAQ-MDPMQQQ 516
Cdd:TIGR03592 81 FIALYQVLLRSIELRHAPF-LWIIDLSSPDPYYI-------------------LPILMGVTMFLQQKLSPKGpPDPAQQK 140
|
170 180 190
....*....|....*....|....*....|....*....
gi 502804295 517 VFA-IMPWMMMFIMAPFAAGLLVYWITNNCLSMLQQWWL 554
Cdd:TIGR03592 141 MMMyFMPLMFLFFFLSFPAGLVLYWVVSNLFTIIQQLII 179
|
|
| YidC_periplas |
pfam14849 |
YidC periplasmic domain; This is the periplasmic domain of YidC, a bacterial membrane protein ... |
75-335 |
3.39e-80 |
|
YidC periplasmic domain; This is the periplasmic domain of YidC, a bacterial membrane protein which is required for the insertion and assembly of inner membrane proteins.
Pssm-ID: 464346 Cd Length: 266 Bit Score: 252.58 E-value: 3.39e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 75 VAIRTPKITGSINLKGARIDDIVLPTYKETIAKSSPAIRLYSPSGTKHaYFAGFGWQGEGVKT-PDGGTVWTASAK---- 149
Cdd:pfam14849 1 ITVETDVLRGSISLKGGRIDDLELKKYRETLDDDSPPVVLLSPSGGRT-YVAQSGLIGAGGPDlPPHDTVFTAEGGsytl 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 150 -ELTPTSPVTLSWNNGAGQTFEIRYSID-ENYMITAQQKVSNGGAGAVGVKSYGYVSR-ATPSADPDTWTIHVGPMGVFN 226
Cdd:pfam14849 80 aDGTDELPVTLTWDNGNGVTFTKTYTFDrGSYLIDVTYEVENTSGAPVTLQPYGQLVRdPGEPEGSSFYITYTGAAGSTD 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 227 GAANYDVNYSDLEKGPATQSFQST-GGWIGFTDKYWLSALIPDQKAAFTG-QMRKGAGTQFQTDMSLAPIMVAPGKAVTQ 304
Cdd:pfam14849 160 EGKYQKVSFDDIEKGGKLKVDTTTgGGWVAMTQHYFLSAWIPDQDGTTNEfYTRFLGGNLYQAGYISPAVTVAPGASATV 239
|
250 260 270
....*....|....*....|....*....|.
gi 502804295 305 TNRLFVGAKEVKTLEAYQdagvPLFDRAIDW 335
Cdd:pfam14849 240 TARLFAGPKEQKVLEAIA----PGLDLAVDY 266
|
|
| EcYidC-like_peri |
cd19961 |
periplasmic beta-super sandwich fold domain of membrane protein insertase YidC from ... |
73-335 |
6.68e-66 |
|
periplasmic beta-super sandwich fold domain of membrane protein insertase YidC from Escherichia coli and similar domains; This subfamily is composed of Escherichia coli YidC and similar proteins. Membrane protein insertase YidC, also called foldase YidC or membrane integrase YidC, facilitates proper folding, insertion, and assembly of inner membrane proteins and complexes. Depending on the nature of the substrate, YidC functions in a Sec-independent (YidC only) or a Sec-dependent manner as part of a complex containing YidC, the SecYEG channel, and SecDFYajC. YidC belongs to the YidC/Oxa1/Alb3 protein family of insertases that contain a core domain of five transmembrane (TM) segments that is essential to insertase function. In addition to this core transmembrane domain, YidC from Gram-negative bacteria contain an extra transmembrane segment (TM1) at the N-terminus and a large periplasmic domain, located between TM1 and TM2, that adopts a beta-super sandwich fold that is found in sugar-binding proteins such as galactose mutarotase. This periplasmic domain may have a role in protein assembly: a region of YidC that binds to SecF maps to one edge of the beta-super sandwich.
Pssm-ID: 411000 Cd Length: 255 Bit Score: 214.87 E-value: 6.68e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 73 PRVAIRTPKITGSINLKGARIDDIVLPTYKETIAKSSPaIRLYSPSGTkhaYFAGFGWQGEGVKT-PDGGTVWTASAKE- 150
Cdd:cd19961 1 KRITVETDLLKASISTKGGRIKSVELKKYKETLPDSKP-VELLSPDGP---YVAQLGLIGADGPLiPTADLLFTADSGSy 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 151 -LTPTSPVTLSWNNGAGQTFEIRYSIDEN-YMITAQQKVSNGGAGAVGVKSYGYVSRAT-PSADPDTWTIHVGPMGVFNG 227
Cdd:cd19961 77 eGGDSLTVTLTWTNGDGLTIEKTYTFDPDsYLIDVEVRVENNSSAPLSLSLYLQLQRKGgEPEGSGSTITYEGPAGTEDG 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 228 AANYdVNYSDLEKGPATqsfQSTGGWIGFTDKYWLSALIPDQKAAFTGQMrKGAGTQFQTDMSLAPIMVAPGKAVTQTNR 307
Cdd:cd19961 157 KLEK-LSFKDLEEEKLS---SGKVGWVAFKQKYFLSALIPDQGFFYSAKL-SGKDDGDGVKLLSAALTLPPGGSGTFSFR 231
|
250 260
....*....|....*....|....*...
gi 502804295 308 LFVGAKEVKTLEAYqdagVPLFDRAIDW 335
Cdd:cd19961 232 LYAGPKDYDILKAY----GPGLELAVDF 255
|
|
| 5TM_YidC_Oxa1_Alb3 |
cd19751 |
Five transmembrane core domain of YidC/Oxa1/Alb3 protein family of insertases; The YidC/Oxa1 ... |
360-556 |
1.55e-45 |
|
Five transmembrane core domain of YidC/Oxa1/Alb3 protein family of insertases; The YidC/Oxa1/Alb3 protein family of insertases facilitate the insertion, folding and assembly of proteins of the inner membranes of bacteria and mitochondria, and the thylakoid membrane of plastids. Members include bacterial YidC, mitochondrial Cox18 and Oxa1, and chloroplastic Alb3 and Alb4. Membrane protein insertase YidC, also called foldase YidC or membrane integrase YidC, facilitates proper folding, insertion, and assembly of inner membrane proteins and complexes. Oxa1 and Cox18/Oxa2 mediate the insertion of both mitochondrion-encoded precursors and nuclear-encoded proteins from the matrix into the mitochondrial inner membrane. Alb3 and Alb3-like proteins, including Alb4, are required for the post-translational insertion of the light-harvesting chlorophyll-binding proteins (LHCPs) into the chloroplast thylakoid membrane. YidC/Oxa1/Alb3 family insertases contain a core domain of five transmembrane (5TM) segments that is essential to insertase function.
Pssm-ID: 410992 [Multi-domain] Cd Length: 189 Bit Score: 158.87 E-value: 1.55e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 360 GVAIICLTFVVRGLMFPVAQRQFASMAAMRAVQPKMKALQEKYKDDKP------RLQQEMMELYKREKVNPLAGCLPIFI 433
Cdd:cd19751 1 GLSIIIVTILIRLALLPLTLKQQKSMRKMQVIRPEMEAIREKYKEKASkdkvqqEMQKEMLGLYKKHGVNPMAGCLPLFI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 434 QIPIFFALYKVLQLTIEMRHQPFvLWIKDLSAPDPLHIvnlfglLPFtppaflgigvlalLLGISMYFQFKLNPAQ---- 509
Cdd:cd19751 81 QLPIFMAFYFAIMRTEEIRYHTF-LWFFDLGQPDYLYI------LPF-------------VAGITTYFQFKMTMSHqqqm 140
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 502804295 510 --MDPMQQQVFAIMPWMMMFIMAPFAAGLLVYWITNNCLSMLQQWWLYK 556
Cdd:cd19751 141 qmMQMQMKVMLYVMPVMIIIAGLSFPSALSLYWIISNLFMIIQTYFIVR 189
|
|
| PRK01315 |
PRK01315 |
putative inner membrane protein translocase component YidC; Provisional |
339-559 |
1.21e-42 |
|
putative inner membrane protein translocase component YidC; Provisional
Pssm-ID: 234941 Cd Length: 329 Bit Score: 155.67 E-value: 1.21e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 339 YWFEKPIFALLHWLFEHIGN------FGVAIICLTFVVRGLMFPVAQRQFASMAAMRAVQPKMKALQEKYKDDKPRLQQE 412
Cdd:PRK01315 16 YWVISGILVLFHTLLGFLFGpdsgltWVLSIVGLVIVIRALLIPLFVKQIKSQRNMQEIQPKMKKIQEKYKGDRERMSQE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 413 MMELYKREKVNPLAGCLPIFIQIPIFFALYKVLQLTIEmRHQPFVLWIKDLSApdPLHIVNLFGL---LPFTPP--AFLG 487
Cdd:PRK01315 96 MMKLYKETGTNPLSSCLPLLLQMPIFFALYRVLDSAAS-RGDGIGPINPPLLE--SFRHAHIFGAplaATFLQAlnAGNT 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 488 I-----GVLALLLGISMYF-QFKLNPAQMDP-------MQQQ--VFAIMPWMMMFIMAPFAAGLLVYWITNNCLSMLQQW 552
Cdd:PRK01315 173 AvqvvaAVLIILMSASQFItQLQLMTKNMPPeaktgpmAQQQkmLLYLFPLMFLVSGIAFPVGVLFYWLTSNVWTMGQQF 252
|
....*..
gi 502804295 553 WLYKRHP 559
Cdd:PRK01315 253 YVIRNNP 259
|
|
| PRK00145 |
PRK00145 |
putative inner membrane protein translocase component YidC; Provisional |
345-557 |
1.52e-41 |
|
putative inner membrane protein translocase component YidC; Provisional
Pssm-ID: 234665 [Multi-domain] Cd Length: 223 Bit Score: 149.12 E-value: 1.52e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 345 IFALLH-WLFEHIGN----FGVAIICLTFVVRGLMFPVAQRQFASMAAMRAVQPKMKALQEKYKDDKPRLQQEMMELYKR 419
Cdd:PRK00145 12 FFKFIHgFVSSVISNpnfsYGIAIILVTLIIRLLILPLNIKQTKSSLRMNEIQPEIKKLQAKYKNDPQKLQQEMMKLYKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 420 EKVNPLAGCLPIFIQIPIFFALYKVLQLTIEMRHQPFvLWIKDLSAPDPLHIvnlfgllpftppaflgigvLALLLGISM 499
Cdd:PRK00145 92 KGVNPLGGCLPLLIQWPILIALYYVFNNLTGINGVSF-LWIKDLAKPDITWI-------------------LPILSGATT 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 502804295 500 YFQ--FKLNPAQMDPMQQQVFAI-MPWMMMFIMAPFAAGLLVYWITNNCLSMLQQWWLYKR 557
Cdd:PRK00145 152 YLSgyLMTKADSSQAGQMKTMNIgMSIFMGVMSWKFKSALVLYWVIGNLIQIIQTYFIKKL 212
|
|
| PRK01001 |
PRK01001 |
putative inner membrane protein translocase component YidC; Provisional |
336-556 |
6.21e-40 |
|
putative inner membrane protein translocase component YidC; Provisional
Pssm-ID: 234887 [Multi-domain] Cd Length: 795 Bit Score: 155.34 E-value: 6.21e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 336 GWFYWFEKPIFALLHWL---FEHI-GNFGVAIICLTFVVRGLMFPVAQRQFASMAAMRAVQPKMKALQEKYKDDKPRLQQ 411
Cdd:PRK01001 549 GFFSFITEPFAALLFIImkfFKFLtGSWGISIILLTVFLKLLLYPLNAWSIRSMRRMQKLSPYIQEIQQKYKKEPKRAQM 628
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 412 EMMELYKREKVNPLAGCLPIFIQIPIFFALYKVLQLTIEMRHQPFVL-WIKDLSAPDPL--------HIVNLFGLLPftp 482
Cdd:PRK01001 629 EIMALYKTNKVNPITGCLPLLIQLPFLIAMFDLLKSSFLLRGASFIPgWIDNLTAPDVLfswetpiwFIGNEFHLLP--- 705
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 483 paflgigvlaLLLGISMYFQFKLNP-AQMDPM--QQQVFAIMPWMMM----FIMAPFAAGLLVYWITNNCLSMLQQWWLY 555
Cdd:PRK01001 706 ----------ILLGVVMFAQQKISSlKRKGPVtdQQRQQEAMGTMMAllftFMFYNFPSGLNIYWLSSMLLGVIQQWVTN 775
|
.
gi 502804295 556 K 556
Cdd:PRK01001 776 K 776
|
|
| PRK01622 |
PRK01622 |
membrane protein insertase YidC; |
337-550 |
3.80e-37 |
|
membrane protein insertase YidC;
Pssm-ID: 179310 Cd Length: 256 Bit Score: 138.35 E-value: 3.80e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 337 WFYWFEKPIFALLHWLFEHI-GNFGVAIICLTFVVRGLMFPVAQRQFASMAAMRA----VQPKMKALQEKYKDDK----- 406
Cdd:PRK01622 37 FDHYFVYPFSFLIQFVAHHIgGSYGIAIIIVTLIIRSLMIPLAVSQYKSQRGMQEkmavMKPELDKIQAKLKVTKdlekq 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 407 PRLQQEMMELYKREKVNPLA-GCLPIFIQIPIFFALYKVLQLTIEMRHQPFvLWIkDLSAPDplHIVNLFGLLpftppaf 485
Cdd:PRK01622 117 KEYQKEMMELYKSGNINPLAmGCLPLLIQMPILSAFYYAIRRTEEIASHSF-LWF-NLGHAD--HILPIIAGL------- 185
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 502804295 486 lgigvlalllgisMYF-QFKL------NPAQMDPMQQQVFaIMPWMMMFIMAPFAAGLLVYWITNNCLSMLQ 550
Cdd:PRK01622 186 -------------TYFiQMKVsqsngtSPEQVQMLKIQGI-MMPAMILFMSFAAPSALVLYWITGGLFLMGQ 243
|
|
| 5TM_Oxa1-like |
cd20069 |
Five transmembrane core domain of mitochondrial inner membrane protein Oxa1 and similar ... |
361-559 |
1.53e-35 |
|
Five transmembrane core domain of mitochondrial inner membrane protein Oxa1 and similar proteins; This group is composed mostly of the mitochondrial members of the YidC/Oxa1/Alb3 protein family of insertases, including mitochondrial inner membrane proteins Oxa1, Oxa1-like (Oxa1L), cytochrome c oxidase assembly protein 18 (Cox18, also called Oxa2), and Arabidopsis thaliana mitochondrial ALBINO3-like protein 3 (ALB33). It also includes Arabidopsis thaliana chloroplastic ALBINO3-like protein 2 (ALB32). Members of this group mediate the insertion of both mitochondrion-encoded precursors and nuclear-encoded proteins from the matrix into the mitochondrial inner membrane. Oxa1 and Cox18/Oxa2 are essential for the activity and assembly of cytochrome c oxidase, playing central roles in the translocation and export of the N-terminal and C-terminal parts, respectively, of the COX2 protein into the mitochondrial intermembrane space. ALB32 may be involved in the insertion of integral membrane proteins into the chloroplast thylakoid membranes. YidC/Oxa1/Alb3 family insertases contain a core domain of five transmembrane (5TM) segments that is essential to insertase function.
Pssm-ID: 410993 [Multi-domain] Cd Length: 201 Bit Score: 132.26 E-value: 1.53e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 361 VAIICLTFVVRGLMFPVAQRQFASMAAMRAVQPKMKALQEKYKDDKP--------RLQQEMMELYKREKVNPLAGCLPIF 432
Cdd:cd20069 6 ATIAATTVALRLLLLPLVIKSQRNAARMANLQPELQKLQEKLKEARAsgdqleaaEARKELKELMKKHNVNPLKSLLLPL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 433 IQIPIF----FALYKVLQLTIE-MRHQPFvLWIKDLSAPDPLHIvnlfglLPFtppaflgIGVLALLLGISMYFQFKLNP 507
Cdd:cd20069 86 VQAPVFisffFALRKMANLPVPsFKTGGL-LWFTDLTVPDPYYI------LPI-------LTSLTFLATIELGAETGTSG 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 502804295 508 AQMDPMQQQVFAIMPWMMMFIMAPFAAGLLVYWITNNCLSMLQQWWLykRHP 559
Cdd:cd20069 152 SPQSKTMKNVFRGLPVLMIPFTANFPSAVFLYWITSNLFSLAQNLLL--RIP 201
|
|
| PRK02944 |
PRK02944 |
YidC family membrane integrase SpoIIIJ; |
337-566 |
2.42e-34 |
|
YidC family membrane integrase SpoIIIJ;
Pssm-ID: 179508 Cd Length: 255 Bit Score: 130.66 E-value: 2.42e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 337 WFYWFEKPIFALLHWLFEHIG-NFGVAIICLTFVVRGLMFPVAQRQFASMAAMRAVQPKMKALQEKY--KDDKP--RLQQ 411
Cdd:PRK02944 36 WNEYFVYPLSQLITYFANLFGsNYGLAIIVVTLLIRLLILPLMIKQTKSTKAMQALQPEMQKLKEKYssKDQATqqKLQQ 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 412 EMMELYKREKVNPLAGCLPIFIQIPIFFALYKVLQLTIEMRHQPFvLWIkDLSAPDPLHIvnlfgllpftppaflgigvL 491
Cdd:PRK02944 116 EMMQLFQKNGVNPLAGCLPIFIQMPILIAFYHAIMRTSEISKHSF-LWF-DLGQADPYYI-------------------L 174
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 502804295 492 ALLLGISMYFQFKL---NPAQMDPMQQQVFAIMPWMMMFIMAPFAAGLLVYWITNNCLSMLQQWWLykRHPQLSAATA 566
Cdd:PRK02944 175 PIVAGITTFIQQKLmmaGTAGQNPQMAMMLWLMPIMILIFAINFPAALSLYWVVGNIFMIAQTYLI--KGPEIKASKA 250
|
|
| PRK03449 |
PRK03449 |
putative inner membrane protein translocase component YidC; Provisional |
339-557 |
9.93e-33 |
|
putative inner membrane protein translocase component YidC; Provisional
Pssm-ID: 179580 Cd Length: 304 Bit Score: 127.49 E-value: 9.93e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 339 YWfekPIFALL---HWLFEHI---GNFGV---AIICLTFVVRGLMFPVAQRQFASMAAMRAVQPKMKALQEKYKDDKPRL 409
Cdd:PRK03449 6 YY---PVSAILwfwHKLFSFVlgpDNGFAwalSVMFLVFTLRALLYKPFVRQIRTTRKMQELQPQIKALQKKYGNDRQKM 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 410 QQEMMELYKREKVNPLAGCLPIFIQIPIFFALYKVLQ-------------LTIEM-RHQPFVLWikdlSAPDPLHIV--N 473
Cdd:PRK03449 83 ALEMQKLQKEHGFNPILGCLPMLAQIPVFLGLFHVLRsfnrtgtgfgqlgMSVEEnRNTPNYVF----SAEDVQSFLdaR 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 474 LFG----------------LLPFTPPAFLGIGV-LALLLGISMYFQFKLNPAQMDPMQQQ--VFAIMPWMMMFIM----- 529
Cdd:PRK03449 159 LFGaplsayitmprsgldaFVDFTRTNIILVGVpLMIIAGVATHFNSRASVARQSAEAAAnpQTAMMNKLALWVFplgvl 238
|
250 260 270
....*....|....*....|....*....|.
gi 502804295 530 --APFAA-GLLVYWITNNCLSMLQQWWLYKR 557
Cdd:PRK03449 239 vgGPFLPlAILLYWVSNNIWTFGQQHYVFGK 269
|
|
| PRK02654 |
PRK02654 |
putative inner membrane protein translocase component YidC; Provisional |
358-456 |
2.11e-24 |
|
putative inner membrane protein translocase component YidC; Provisional
Pssm-ID: 235058 Cd Length: 375 Bit Score: 105.06 E-value: 2.11e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 358 NFGVAIICLTFVVRGLMFPVAQRQFASMAAMRAVQPKMKA----LQEKYKDDKPRLQQEMMELYKrEKVNPLAGCLPIFI 433
Cdd:PRK02654 26 SYGLAIVALTLVIRFALYPLSAGSIRNMRRMKIAQPVMQKrqaeIQERYKNDPQKQQEEMGKLMK-EFGNPLAGCLPLLV 104
|
90 100
....*....|....*....|...
gi 502804295 434 QIPIFFALYKVLqltiemRHQPF 456
Cdd:PRK02654 105 QMPILFALFATL------RGSPF 121
|
|
| PRK02201 |
PRK02201 |
putative inner membrane protein translocase component YidC; Provisional |
334-550 |
1.96e-22 |
|
putative inner membrane protein translocase component YidC; Provisional
Pssm-ID: 235012 Cd Length: 357 Bit Score: 98.93 E-value: 1.96e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 334 DWGW----FY-WFEKPIFALLHWLFEHIGNFG-------VAIICLTFVVRGLMFPVAQRQFASMAAMRAVQPKMKALQEK 401
Cdd:PRK02201 96 SWTWkygpFYgLFVYPIAQIILSIMASQSLSElygwstiLAIIVVVLIIRLISFLITFKSTFNQEKQEELQGKKAKIDAK 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 402 YKDD------KPRLQQEMMELYKREKVNPLAGCLPIFIQIPIFFALYKVLQLTIEMRhQPFVLWIkDLSAPDPLHIVNlf 475
Cdd:PRK02201 176 YKDYkkdkqmKQRKQQEIQELYKKHNISPFSPFVQMFVTLPIFIAVYRVVQSLPSIK-VTTWLGI-DLSATSWQEIFA-- 251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 476 GLLPFtppaflgIGVLALLLGISMYFQF-------------KLNPAQMDPM--QQQVFAIMPWMMMFIMAPFAAGLLVYW 540
Cdd:PRK02201 252 GNWIY-------LPILIIVVPVQALSQLlpqilnkkknkerTLNVKEKEALkkQNKTQNIISIVFIFFGVIFAAGVQIYW 324
|
250
....*....|
gi 502804295 541 ITNNCLSMLQ 550
Cdd:PRK02201 325 IIGGIWTILQ 334
|
|
| PRK02463 |
PRK02463 |
OxaA-like protein precursor; Provisional |
336-551 |
2.05e-17 |
|
OxaA-like protein precursor; Provisional
Pssm-ID: 235040 Cd Length: 307 Bit Score: 83.24 E-value: 2.05e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 336 GWFY-WFEKPIFALLHWLFEHIG-NFGVAIICLTFVVRGLMFPVAQRQFASMA----AMRAVQPKMKALQEKYK-----D 404
Cdd:PRK02463 35 GFIWnFLGAPMSYFIDYFANNLGlGFGLAIIIVTIIVRLIILPLGLYQSWKATyqseKMAYLKPVFEPINERLKnattqE 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 405 DKPRLQQEMMELYKREKVNPLA--GCLPIFIQIPIFFALYKVLQLTIEMRHQPFvLWIkDLSAPDPlhivnlfgllpftp 482
Cdd:PRK02463 115 EKMAAQTELMAAQRENGISMLGgiGCLPLLIQMPFFSALYFAAQYTKGVSTSTF-LGI-DLGSPSL-------------- 178
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 502804295 483 paflgigVLALLLGISMYFQFKLNPAQMDPMQQQ----VFAIMPWMMMF--IMAPfaAGLLVYWITNNCLSMLQQ 551
Cdd:PRK02463 179 -------VLTAIIGVLYFFQSWLSMMGVPEEQREqmkaMMYMMPIMMVVfsFSSP--AGVGLYWLVGGFFSIIQQ 244
|
|
| PRK00247 |
PRK00247 |
putative inner membrane protein translocase component YidC; Validated |
366-555 |
2.49e-16 |
|
putative inner membrane protein translocase component YidC; Validated
Pssm-ID: 178945 [Multi-domain] Cd Length: 429 Bit Score: 81.44 E-value: 2.49e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 366 LTFVVRGLMFPVAQRQFASMAAMRAVQPKMKALQEKYKD--DKP---RLQQEMMELYKREKVNPLAGCLPIFIQIPIFFA 440
Cdd:PRK00247 39 LVITVRAIIAPFTWQQYKSGRTAAHIRPKRKALREEYKGktDEAsirELQQKQKDLNKEYGYNPLAGCVPALIQIPVFLG 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 441 LYKVLqltIEM----------RHQPfvlwIKDLSAPD------------PLHIVNLFG-------------LLPFTPPAF 485
Cdd:PRK00247 119 LYQVL---LRMarpegglenpVHQP----IGFLTSEEvesflqgrvfnvPLPAYVSMPaeqlaylgttqatVLAFVLPLF 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502804295 486 LGIGVL-ALLLGISMYFQFKLNPAQmDPMQQQVFAIMPWMMMF---------IMAPFAAGLLVYWITNNCLSMLQQWWLY 555
Cdd:PRK00247 192 IAAAVFtAINMAMSTYRSFQTNDHD-SGFAVGMLKFLIVMAILapifplslgLTGPFPTAIALYWVANNLWTLIQNIIMY 270
|
|
| |
