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Conserved domains on  [gi|502819905|ref|WP_013054881|]
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MULTISPECIES: VWA domain-containing protein [Priestia]

Protein Classification

vWA domain-containing protein( domain architecture ID 630)

vWA (von Willebrand factor type A) domain-containing protein may be involved in one of a wide variety of important cellular functions, including basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and immune defenses

CATH:  3.40.50.410
SCOP:  3000832

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ChlD super family cl34203
vWFA (von Willebrand factor type A) domain of Mg and Co chelatases [Coenzyme transport and ...
7-65 4.02e-07

vWFA (von Willebrand factor type A) domain of Mg and Co chelatases [Coenzyme transport and metabolism];


The actual alignment was detected with superfamily member COG1240:

Pssm-ID: 440853 [Multi-domain]  Cd Length: 262  Bit Score: 49.55  E-value: 4.02e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 502819905   7 KQMLVITDGGSNTG-EDPVAMAALAKEQGISVNVIGVMEEDtIDEqstNEIEGIAMSGGG 65
Cdd:COG1240  188 KVIVLLTDGRDNAGrIDPLEAAELAAAAGIRIYTIGVGTEA-VDE---GLLREIAEATGG 243
vWFA super family cl00057
Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation ...
136-229 2.43e-04

Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.


The actual alignment was detected with superfamily member cd00198:

Pssm-ID: 469594 [Multi-domain]  Cd Length: 161  Bit Score: 40.63  E-value: 2.43e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502819905 136 ILILVDMSGSM-KNKLPTVKESLLDLSLSLNARMGHNQFSIFLFPGKKKDVEKLMDWNPRLESLSTI-FPKLTAGGITPT 213
Cdd:cd00198    3 IVFLLDVSGSMgGEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSNARVVLPLTTDTDKADLLEAIdALKKGLGGGTNI 82
                         90
                 ....*....|....*.
gi 502819905 214 GPAIKEATHYFTKKRS 229
Cdd:cd00198   83 GAALRLALELLKSAKR 98
 
Name Accession Description Interval E-value
ChlD COG1240
vWFA (von Willebrand factor type A) domain of Mg and Co chelatases [Coenzyme transport and ...
7-65 4.02e-07

vWFA (von Willebrand factor type A) domain of Mg and Co chelatases [Coenzyme transport and metabolism];


Pssm-ID: 440853 [Multi-domain]  Cd Length: 262  Bit Score: 49.55  E-value: 4.02e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 502819905   7 KQMLVITDGGSNTG-EDPVAMAALAKEQGISVNVIGVMEEDtIDEqstNEIEGIAMSGGG 65
Cdd:COG1240  188 KVIVLLTDGRDNAGrIDPLEAAELAAAAGIRIYTIGVGTEA-VDE---GLLREIAEATGG 243
vWA_BatA_type cd01467
VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood ...
7-42 1.42e-04

VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains. Members of this subgroup are bacterial in origin. They are typified by the presence of a MIDAS motif.


Pssm-ID: 238744 [Multi-domain]  Cd Length: 180  Bit Score: 41.55  E-value: 1.42e-04
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 502819905   7 KQMLVITDGGSNTGE-DPVAMAALAKEQGISVNVIGV 42
Cdd:cd01467  104 RVIVLLTDGENNAGEiDPATAAELAKNKGVRIYTIGV 140
vWFA cd00198
Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation ...
136-229 2.43e-04

Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.


Pssm-ID: 238119 [Multi-domain]  Cd Length: 161  Bit Score: 40.63  E-value: 2.43e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502819905 136 ILILVDMSGSM-KNKLPTVKESLLDLSLSLNARMGHNQFSIFLFPGKKKDVEKLMDWNPRLESLSTI-FPKLTAGGITPT 213
Cdd:cd00198    3 IVFLLDVSGSMgGEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSNARVVLPLTTDTDKADLLEAIdALKKGLGGGTNI 82
                         90
                 ....*....|....*.
gi 502819905 214 GPAIKEATHYFTKKRS 229
Cdd:cd00198   83 GAALRLALELLKSAKR 98
VWA smart00327
von Willebrand factor (vWF) type A domain; VWA domains in extracellular eukaryotic proteins ...
2-66 1.13e-03

von Willebrand factor (vWF) type A domain; VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.


Pssm-ID: 214621 [Multi-domain]  Cd Length: 175  Bit Score: 38.59  E-value: 1.13e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 502819905     2 KKGTLKQMLVITDGGSNTGEDPVAMAA-LAKEQGISVNVIGVmeedtIDEQSTNEIEGIAMSGGGV 66
Cdd:smart00327 100 RRGAPKVVILITDGESNDGPKDLLKAAkELKRSGVKVFVVGV-----GNDVDEEELKKLASAPGGV 160
VWA smart00327
von Willebrand factor (vWF) type A domain; VWA domains in extracellular eukaryotic proteins ...
136-229 2.12e-03

von Willebrand factor (vWF) type A domain; VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.


Pssm-ID: 214621 [Multi-domain]  Cd Length: 175  Bit Score: 37.82  E-value: 2.12e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502819905   136 ILILVDMSGSM-KNKLPTVKESLLDLSLSLNARMGHNQFSIFLFPGkkkDVEKLMDWN--PRLESLSTIFPKL--TAGGI 210
Cdd:smart00327   2 VVFLLDGSGSMgGNRFELAKEFVLKLVEQLDIGPDGDRVGLVTFSD---DARVLFPLNdsRSKDALLEALASLsyKLGGG 78
                           90
                   ....*....|....*....
gi 502819905   211 TPTGPAIKEATHYFTKKRS 229
Cdd:smart00327  79 TNLGAALQYALENLFSKSA 97
VWA pfam00092
von Willebrand factor type A domain;
1-64 3.67e-03

von Willebrand factor type A domain;


Pssm-ID: 459670 [Multi-domain]  Cd Length: 174  Bit Score: 37.25  E-value: 3.67e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 502819905    1 MKKGTLKQMLVITDGGSNTGeDPVAMAALAKEQGISVNVIGVmeedtiDEQSTNEIEGIAMSGG 64
Cdd:pfam00092  99 ARPGAPKVVVLLTDGRSQDG-DPEEVARELKSAGVTVFAVGV------GNADDEELRKIASEPG 155
TerY COG4245
Uncharacterized conserved protein YegL, contains vWA domain of TerY type [Function unknown];
134-222 3.99e-03

Uncharacterized conserved protein YegL, contains vWA domain of TerY type [Function unknown];


Pssm-ID: 443387 [Multi-domain]  Cd Length: 196  Bit Score: 37.21  E-value: 3.99e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502819905 134 LEILILVDMSGSMK-NKLPTVK--------ESLLDLSLSLNARMghnqfSIFLFPGkkkDVEKLMDWNPrLESLStiFPK 204
Cdd:COG4245    6 LPVYLLLDTSGSMSgEPIEALNeglqalidELRQDPYALETVEV-----SVITFDG---EAKVLLPLTD-LEDFQ--PPD 74
                         90
                 ....*....|....*...
gi 502819905 205 LTAGGITPTGPAIKEATH 222
Cdd:COG4245   75 LSASGGTPLGAALELLLD 92
 
Name Accession Description Interval E-value
ChlD COG1240
vWFA (von Willebrand factor type A) domain of Mg and Co chelatases [Coenzyme transport and ...
7-65 4.02e-07

vWFA (von Willebrand factor type A) domain of Mg and Co chelatases [Coenzyme transport and metabolism];


Pssm-ID: 440853 [Multi-domain]  Cd Length: 262  Bit Score: 49.55  E-value: 4.02e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 502819905   7 KQMLVITDGGSNTG-EDPVAMAALAKEQGISVNVIGVMEEDtIDEqstNEIEGIAMSGGG 65
Cdd:COG1240  188 KVIVLLTDGRDNAGrIDPLEAAELAAAAGIRIYTIGVGTEA-VDE---GLLREIAEATGG 243
vWA_BatA_type cd01467
VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood ...
7-42 1.42e-04

VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains. Members of this subgroup are bacterial in origin. They are typified by the presence of a MIDAS motif.


Pssm-ID: 238744 [Multi-domain]  Cd Length: 180  Bit Score: 41.55  E-value: 1.42e-04
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 502819905   7 KQMLVITDGGSNTGE-DPVAMAALAKEQGISVNVIGV 42
Cdd:cd01467  104 RVIVLLTDGENNAGEiDPATAAELAKNKGVRIYTIGV 140
vWFA cd00198
Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation ...
136-229 2.43e-04

Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.


Pssm-ID: 238119 [Multi-domain]  Cd Length: 161  Bit Score: 40.63  E-value: 2.43e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502819905 136 ILILVDMSGSM-KNKLPTVKESLLDLSLSLNARMGHNQFSIFLFPGKKKDVEKLMDWNPRLESLSTI-FPKLTAGGITPT 213
Cdd:cd00198    3 IVFLLDVSGSMgGEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSNARVVLPLTTDTDKADLLEAIdALKKGLGGGTNI 82
                         90
                 ....*....|....*.
gi 502819905 214 GPAIKEATHYFTKKRS 229
Cdd:cd00198   83 GAALRLALELLKSAKR 98
vWFA_subfamily_ECM cd01450
Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation ...
1-42 2.96e-04

Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains


Pssm-ID: 238727 [Multi-domain]  Cd Length: 161  Bit Score: 40.35  E-value: 2.96e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 502819905   1 MKKGTLKQMLVITDGGSNTGEDPVAMAALAKEQGISVNVIGV 42
Cdd:cd01450   99 ARENVPKVIIVLTDGRSDDGGDPKEAAAKLKDEGIKVFVVGV 140
VWA smart00327
von Willebrand factor (vWF) type A domain; VWA domains in extracellular eukaryotic proteins ...
2-66 1.13e-03

von Willebrand factor (vWF) type A domain; VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.


Pssm-ID: 214621 [Multi-domain]  Cd Length: 175  Bit Score: 38.59  E-value: 1.13e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 502819905     2 KKGTLKQMLVITDGGSNTGEDPVAMAA-LAKEQGISVNVIGVmeedtIDEQSTNEIEGIAMSGGGV 66
Cdd:smart00327 100 RRGAPKVVILITDGESNDGPKDLLKAAkELKRSGVKVFVVGV-----GNDVDEEELKKLASAPGGV 160
VWA smart00327
von Willebrand factor (vWF) type A domain; VWA domains in extracellular eukaryotic proteins ...
136-229 2.12e-03

von Willebrand factor (vWF) type A domain; VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.


Pssm-ID: 214621 [Multi-domain]  Cd Length: 175  Bit Score: 37.82  E-value: 2.12e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502819905   136 ILILVDMSGSM-KNKLPTVKESLLDLSLSLNARMGHNQFSIFLFPGkkkDVEKLMDWN--PRLESLSTIFPKL--TAGGI 210
Cdd:smart00327   2 VVFLLDGSGSMgGNRFELAKEFVLKLVEQLDIGPDGDRVGLVTFSD---DARVLFPLNdsRSKDALLEALASLsyKLGGG 78
                           90
                   ....*....|....*....
gi 502819905   211 TPTGPAIKEATHYFTKKRS 229
Cdd:smart00327  79 TNLGAALQYALENLFSKSA 97
VWA pfam00092
von Willebrand factor type A domain;
1-64 3.67e-03

von Willebrand factor type A domain;


Pssm-ID: 459670 [Multi-domain]  Cd Length: 174  Bit Score: 37.25  E-value: 3.67e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 502819905    1 MKKGTLKQMLVITDGGSNTGeDPVAMAALAKEQGISVNVIGVmeedtiDEQSTNEIEGIAMSGG 64
Cdd:pfam00092  99 ARPGAPKVVVLLTDGRSQDG-DPEEVARELKSAGVTVFAVGV------GNADDEELRKIASEPG 155
TerY COG4245
Uncharacterized conserved protein YegL, contains vWA domain of TerY type [Function unknown];
134-222 3.99e-03

Uncharacterized conserved protein YegL, contains vWA domain of TerY type [Function unknown];


Pssm-ID: 443387 [Multi-domain]  Cd Length: 196  Bit Score: 37.21  E-value: 3.99e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502819905 134 LEILILVDMSGSMK-NKLPTVK--------ESLLDLSLSLNARMghnqfSIFLFPGkkkDVEKLMDWNPrLESLStiFPK 204
Cdd:COG4245    6 LPVYLLLDTSGSMSgEPIEALNeglqalidELRQDPYALETVEV-----SVITFDG---EAKVLLPLTD-LEDFQ--PPD 74
                         90
                 ....*....|....*...
gi 502819905 205 LTAGGITPTGPAIKEATH 222
Cdd:COG4245   75 LSASGGTPLGAALELLLD 92
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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