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Conserved domains on  [gi|502822619|ref|WP_013057595|]
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MULTISPECIES: PadR family transcriptional regulator [Priestia]

Protein Classification

PadR family transcriptional regulator( domain architecture ID 11447737)

PadR family transcriptional regulator similar to the phenolic acid decarboxylation repressor, which is a transcription factor that represses genes associated with the phenolic acid stress response in gram-positive bacteria

Gene Ontology:  GO:0003677|GO:0003700
PubMed:  10679470|10908318|10473770|15808743|8831795

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PadR COG1695
DNA-binding transcriptional regulator, PadR family [Transcription];
1-84 6.52e-20

DNA-binding transcriptional regulator, PadR family [Transcription];


:

Pssm-ID: 441301  Cd Length: 102  Bit Score: 80.37  E-value: 6.52e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502822619   1 MSVKLVILGLLMEGNKHPYEIQQTINERqMKHYIKLASGSLYYAFDTLEKNQLVKVVDVIREtNRPEKTVYSITDAGREE 80
Cdd:COG1695    8 GTLELLILALLAEGPMYGYEIIKELEER-SGGFWKVSEGTLYPALKRLEKEGLVESEWEESE-GGPRRKYYRLTEAGREE 85


                 ....
gi 502822619  81 FERL 84
Cdd:COG1695   86 LAEW 89
 
Name Accession Description Interval E-value
PadR COG1695
DNA-binding transcriptional regulator, PadR family [Transcription];
1-84 6.52e-20

DNA-binding transcriptional regulator, PadR family [Transcription];


Pssm-ID: 441301  Cd Length: 102  Bit Score: 80.37  E-value: 6.52e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502822619   1 MSVKLVILGLLMEGNKHPYEIQQTINERqMKHYIKLASGSLYYAFDTLEKNQLVKVVDVIREtNRPEKTVYSITDAGREE 80
Cdd:COG1695    8 GTLELLILALLAEGPMYGYEIIKELEER-SGGFWKVSEGTLYPALKRLEKEGLVESEWEESE-GGPRRKYYRLTEAGREE 85


                 ....
gi 502822619  81 FERL 84
Cdd:COG1695   86 LAEW 89
PadR pfam03551
Transcriptional regulator PadR-like family; Members of this family are transcriptional ...
 7-82 5.68e-09

Transcriptional regulator PadR-like family; Members of this family are transcriptional regulators that appear to be related to the pfam01047 family. This family includes PadR, a protein that is involved in negative regulation of phenolic acid metabolism.


Pssm-ID: 397561  Cd Length: 74  Bit Score: 50.71  E-value: 5.68e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 502822619    7 ILGLLMEGNKHPYEIQQTINERQMKHYIkLASGSLYYAFDTLEKNQLVKVVDVIRETNRPEKtVYSITDAGREEFE 82
Cdd:pfam03551   1 VLAVLGEQPRYGYEIIKELEELSGGFWR-PSEGTLYPILKRLEKEGLVESEWVDSGGGPPRK-YYRLTDAGRRELA 74
 
Name Accession Description Interval E-value
PadR COG1695
DNA-binding transcriptional regulator, PadR family [Transcription];
1-84 6.52e-20

DNA-binding transcriptional regulator, PadR family [Transcription];


Pssm-ID: 441301  Cd Length: 102  Bit Score: 80.37  E-value: 6.52e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502822619   1 MSVKLVILGLLMEGNKHPYEIQQTINERqMKHYIKLASGSLYYAFDTLEKNQLVKVVDVIREtNRPEKTVYSITDAGREE 80
Cdd:COG1695    8 GTLELLILALLAEGPMYGYEIIKELEER-SGGFWKVSEGTLYPALKRLEKEGLVESEWEESE-GGPRRKYYRLTEAGREE 85


                 ....
gi 502822619  81 FERL 84
Cdd:COG1695   86 LAEW 89
PadR pfam03551
Transcriptional regulator PadR-like family; Members of this family are transcriptional ...
 7-82 5.68e-09

Transcriptional regulator PadR-like family; Members of this family are transcriptional regulators that appear to be related to the pfam01047 family. This family includes PadR, a protein that is involved in negative regulation of phenolic acid metabolism.


Pssm-ID: 397561  Cd Length: 74  Bit Score: 50.71  E-value: 5.68e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 502822619    7 ILGLLMEGNKHPYEIQQTINERQMKHYIkLASGSLYYAFDTLEKNQLVKVVDVIRETNRPEKtVYSITDAGREEFE 82
Cdd:pfam03551   1 VLAVLGEQPRYGYEIIKELEELSGGFWR-PSEGTLYPILKRLEKEGLVESEWVDSGGGPPRK-YYRLTDAGRRELA 74
HTH_34 pfam13601
Winged helix DNA-binding domain;
28-89 3.20e-03

Winged helix DNA-binding domain;


Pssm-ID: 463932 [Multi-domain]  Cd Length: 80  Bit Score: 35.31  E-value: 3.20e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 502822619   28 RQMKHYIKLASGSLYYAFDTLEKNQLVKVVDVIRetNRPEKTVYSITDAGREEFERlYFEQL 89
Cdd:pfam13601  18 VELKEALEATDGNLSVHLRKLEKAGYIECDKSFV--GRKPRTLYRITPEGREAFED-YVKAL 76
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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