NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|502823887|ref|WP_013058863|]
View 

MULTISPECIES: flagellar type III secretion system pore protein FliP [Priestia]

Protein Classification

flagellar type III secretion system pore protein FliP( domain architecture ID 10003557)

flagellar type III secretion system pore protein FliP plays a role in the flagellum-specific transport system

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
FliP COG1338
Flagellar biosynthesis protein FliP [Cell motility];
5-222 2.30e-130

Flagellar biosynthesis protein FliP [Cell motility];


:

Pssm-ID: 440949  Cd Length: 249  Bit Score: 367.13  E-value: 2.30e-130
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502823887   5 MNLFNSSSPTNISTSVQLLLLLTVFSVAPGILIMMTCFTRIVIVLSFVRTSLGTQQMPPNQILVGLSLFLTFFIMAPTFS 84
Cdd:COG1338   32 LTLGGAGGGQTYSLSLQILLLLTVLSLAPAILLMMTSFTRIIIVLSFLRQALGTQQTPPNQVLIGLALFLTFFVMAPVFD 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502823887  85 QVNEQALQPLLKEKITLNQAYEKAAEPMKEFMSAHTRQKDLALFLEYADIDRPSSVQDIPLTALVPAYAISELKTAFQIG 164
Cdd:COG1338  112 QIYDDALQPYLAGEITQEEALERASEPLREFMLKQTREKDLALFADLAGEPPPETPEDVPLRVLIPAFVISELKTAFQIG 191

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 502823887 165 FMIFIPFLIIDMIIASVLMSMGMMMLPPVMISLPFKILLFVLVDGWNLVVKSLLISFQ 222
Cdd:COG1338  192 FLIFLPFLVIDLVVASVLMSMGMMMLPPVMISLPFKLLLFVLVDGWNLLVGSLVRSFG 249
 
Name Accession Description Interval E-value
FliP COG1338
Flagellar biosynthesis protein FliP [Cell motility];
5-222 2.30e-130

Flagellar biosynthesis protein FliP [Cell motility];


Pssm-ID: 440949  Cd Length: 249  Bit Score: 367.13  E-value: 2.30e-130
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502823887   5 MNLFNSSSPTNISTSVQLLLLLTVFSVAPGILIMMTCFTRIVIVLSFVRTSLGTQQMPPNQILVGLSLFLTFFIMAPTFS 84
Cdd:COG1338   32 LTLGGAGGGQTYSLSLQILLLLTVLSLAPAILLMMTSFTRIIIVLSFLRQALGTQQTPPNQVLIGLALFLTFFVMAPVFD 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502823887  85 QVNEQALQPLLKEKITLNQAYEKAAEPMKEFMSAHTRQKDLALFLEYADIDRPSSVQDIPLTALVPAYAISELKTAFQIG 164
Cdd:COG1338  112 QIYDDALQPYLAGEITQEEALERASEPLREFMLKQTREKDLALFADLAGEPPPETPEDVPLRVLIPAFVISELKTAFQIG 191

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 502823887 165 FMIFIPFLIIDMIIASVLMSMGMMMLPPVMISLPFKILLFVLVDGWNLVVKSLLISFQ 222
Cdd:COG1338  192 FLIFLPFLVIDLVVASVLMSMGMMMLPPVMISLPFKLLLFVLVDGWNLLVGSLVRSFG 249
fliP PRK05699
flagellar biosynthesis protein FliP; Reviewed
 9-222 1.21e-119

flagellar biosynthesis protein FliP; Reviewed


Pssm-ID: 235566  Cd Length: 245  Bit Score: 339.86  E-value: 1.21e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502823887   9 NSSSPTNISTSVQLLLLLTVFSVAPGILIMMTCFTRIVIVLSFVRTSLGTQQMPPNQILVGLSLFLTFFIMAPTFSQVNE 88
Cdd:PRK05699  32 GANGGQEYSLSLQLLLLLTVLSLAPAILLMMTSFTRIIIVLSLLRQALGTQQTPPNQVLIGLALFLTFFIMSPVFDKIYD 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502823887  89 QALQPLLKEKITLNQAYEKAAEPMKEFMSAHTRQKDLALFLEYADIDrPSSVQDIPLTALVPAYAISELKTAFQIGFMIF 168
Cdd:PRK05699 112 DAIQPYLDEKITLEEALERAAAPLREFMLKQTREKDLALFAKLAGEP-PKTPEDVPLSVLVPAFVLSELKTAFQIGFLIF 190

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 502823887 169 IPFLIIDMIIASVLMSMGMMMLPPVMISLPFKILLFVLVDGWNLVVKSLLISFQ 222
Cdd:PRK05699 191 LPFLIIDLVVASVLMSMGMMMLPPVIISLPFKLLLFVLVDGWNLLVGSLVQSFG 244
FliP pfam00813
FliP family;
26-217 1.10e-111

FliP family;


Pssm-ID: 425882  Cd Length: 191  Bit Score: 317.43  E-value: 1.10e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502823887   26 LTVFSVAPGILIMMTCFTRIVIVLSFVRTSLGTQQMPPNQILVGLSLFLTFFIMAPTFSQVNEQALQPLLKEKITLNQAY 105
Cdd:pfam00813   1 LTVLSLAPAILIMMTSFTRIVIVLSFLRNALGTQQTPPNQVLIGLALFLTFFIMAPVFQQIYEDALQPYLAGEITQEEAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502823887  106 EKAAEPMKEFMSAHTRQKDLALFLEYADIdRPSSVQDIPLTALVPAYAISELKTAFQIGFMIFIPFLIIDMIIASVLMSM 185
Cdd:pfam00813  81 ERASEPLREFMLKQTREKDLALFLDLAGQ-WPETAEDVPLTVLIPAFVISELKTAFQIGFLIYLPFLVIDLVVASVLMSM 159

                         170       180       190
                  ....*....|....*....|....*....|..
gi 502823887  186 GMMMLPPVMISLPFKILLFVLVDGWNLVVKSL 217
Cdd:pfam00813 160 GMMMLPPVTISLPFKLLLFVLVDGWTLLVGSL 191
fliP TIGR01103
flagellar biosynthetic protein FliP; This model describes bacterial flagellar biogenesis ...
 25-221 4.48e-96

flagellar biosynthetic protein FliP; This model describes bacterial flagellar biogenesis protein fliP, which is one of the genes in motility locus on the bacterial chromosome that is involved in structure and function of bacterial flagellum. It was demonstrated that mutants in fliP locus were non-flagellated and non-motile, while revertants were flagellated and motile. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 211625  Cd Length: 197  Bit Score: 278.49  E-value: 4.48e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502823887   25 LLTVFSVAPGILIMMTCFTRIVIVLSFVRTSLGTQQMPPNQILVGLSLFLTFFIMAPTFSQVNEQALQPLLKEKITLNQA 104
Cdd:TIGR01103   1 LLTVLSLAPAILIMMTSFTRIVIVLSILRSALGLQSTPPNQVLLGLALFLTFFVMAPTFDRIYDDAYQPLLDNQISEQEA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502823887  105 YEKAAEPMKEFMSAHTRQKDLALFLEYADIDRPSSVQDIPLTALVPAYAISELKTAFQIGFMIFIPFLIIDMIIASVLMS 184
Cdd:TIGR01103  81 YQKAEEPLREFMLRQTRDKDLALFMRLAKIPKPQTPEAVPLRVLVPAFMLSELKTAFQIGFLIFIPFLIIDLVVASVLMA 160

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 502823887  185 MGMMMLPPVMISLPFKILLFVLVDGWNLVVKSLLISF 221
Cdd:TIGR01103 161 MGMMMLPPVMISLPFKLMLFVLVDGWNLLVGSLVQSF 197
 
Name Accession Description Interval E-value
FliP COG1338
Flagellar biosynthesis protein FliP [Cell motility];
5-222 2.30e-130

Flagellar biosynthesis protein FliP [Cell motility];


Pssm-ID: 440949  Cd Length: 249  Bit Score: 367.13  E-value: 2.30e-130
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502823887   5 MNLFNSSSPTNISTSVQLLLLLTVFSVAPGILIMMTCFTRIVIVLSFVRTSLGTQQMPPNQILVGLSLFLTFFIMAPTFS 84
Cdd:COG1338   32 LTLGGAGGGQTYSLSLQILLLLTVLSLAPAILLMMTSFTRIIIVLSFLRQALGTQQTPPNQVLIGLALFLTFFVMAPVFD 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502823887  85 QVNEQALQPLLKEKITLNQAYEKAAEPMKEFMSAHTRQKDLALFLEYADIDRPSSVQDIPLTALVPAYAISELKTAFQIG 164
Cdd:COG1338  112 QIYDDALQPYLAGEITQEEALERASEPLREFMLKQTREKDLALFADLAGEPPPETPEDVPLRVLIPAFVISELKTAFQIG 191

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 502823887 165 FMIFIPFLIIDMIIASVLMSMGMMMLPPVMISLPFKILLFVLVDGWNLVVKSLLISFQ 222
Cdd:COG1338  192 FLIFLPFLVIDLVVASVLMSMGMMMLPPVMISLPFKLLLFVLVDGWNLLVGSLVRSFG 249
fliP PRK05699
flagellar biosynthesis protein FliP; Reviewed
 9-222 1.21e-119

flagellar biosynthesis protein FliP; Reviewed


Pssm-ID: 235566  Cd Length: 245  Bit Score: 339.86  E-value: 1.21e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502823887   9 NSSSPTNISTSVQLLLLLTVFSVAPGILIMMTCFTRIVIVLSFVRTSLGTQQMPPNQILVGLSLFLTFFIMAPTFSQVNE 88
Cdd:PRK05699  32 GANGGQEYSLSLQLLLLLTVLSLAPAILLMMTSFTRIIIVLSLLRQALGTQQTPPNQVLIGLALFLTFFIMSPVFDKIYD 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502823887  89 QALQPLLKEKITLNQAYEKAAEPMKEFMSAHTRQKDLALFLEYADIDrPSSVQDIPLTALVPAYAISELKTAFQIGFMIF 168
Cdd:PRK05699 112 DAIQPYLDEKITLEEALERAAAPLREFMLKQTREKDLALFAKLAGEP-PKTPEDVPLSVLVPAFVLSELKTAFQIGFLIF 190

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 502823887 169 IPFLIIDMIIASVLMSMGMMMLPPVMISLPFKILLFVLVDGWNLVVKSLLISFQ 222
Cdd:PRK05699 191 LPFLIIDLVVASVLMSMGMMMLPPVIISLPFKLLLFVLVDGWNLLVGSLVQSFG 244
FliP pfam00813
FliP family;
26-217 1.10e-111

FliP family;


Pssm-ID: 425882  Cd Length: 191  Bit Score: 317.43  E-value: 1.10e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502823887   26 LTVFSVAPGILIMMTCFTRIVIVLSFVRTSLGTQQMPPNQILVGLSLFLTFFIMAPTFSQVNEQALQPLLKEKITLNQAY 105
Cdd:pfam00813   1 LTVLSLAPAILIMMTSFTRIVIVLSFLRNALGTQQTPPNQVLIGLALFLTFFIMAPVFQQIYEDALQPYLAGEITQEEAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502823887  106 EKAAEPMKEFMSAHTRQKDLALFLEYADIdRPSSVQDIPLTALVPAYAISELKTAFQIGFMIFIPFLIIDMIIASVLMSM 185
Cdd:pfam00813  81 ERASEPLREFMLKQTREKDLALFLDLAGQ-WPETAEDVPLTVLIPAFVISELKTAFQIGFLIYLPFLVIDLVVASVLMSM 159

                         170       180       190
                  ....*....|....*....|....*....|..
gi 502823887  186 GMMMLPPVMISLPFKILLFVLVDGWNLVVKSL 217
Cdd:pfam00813 160 GMMMLPPVTISLPFKLLLFVLVDGWTLLVGSL 191
fliP TIGR01103
flagellar biosynthetic protein FliP; This model describes bacterial flagellar biogenesis ...
 25-221 4.48e-96

flagellar biosynthetic protein FliP; This model describes bacterial flagellar biogenesis protein fliP, which is one of the genes in motility locus on the bacterial chromosome that is involved in structure and function of bacterial flagellum. It was demonstrated that mutants in fliP locus were non-flagellated and non-motile, while revertants were flagellated and motile. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 211625  Cd Length: 197  Bit Score: 278.49  E-value: 4.48e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502823887   25 LLTVFSVAPGILIMMTCFTRIVIVLSFVRTSLGTQQMPPNQILVGLSLFLTFFIMAPTFSQVNEQALQPLLKEKITLNQA 104
Cdd:TIGR01103   1 LLTVLSLAPAILIMMTSFTRIVIVLSILRSALGLQSTPPNQVLLGLALFLTFFVMAPTFDRIYDDAYQPLLDNQISEQEA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502823887  105 YEKAAEPMKEFMSAHTRQKDLALFLEYADIDRPSSVQDIPLTALVPAYAISELKTAFQIGFMIFIPFLIIDMIIASVLMS 184
Cdd:TIGR01103  81 YQKAEEPLREFMLRQTRDKDLALFMRLAKIPKPQTPEAVPLRVLVPAFMLSELKTAFQIGFLIFIPFLIIDLVVASVLMA 160

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 502823887  185 MGMMMLPPVMISLPFKILLFVLVDGWNLVVKSLLISF 221
Cdd:TIGR01103 161 MGMMMLPPVMISLPFKLMLFVLVDGWNLLVGSLVQSF 197
EscR COG4790
Type III secretory pathway, EscR/YscR component [Intracellular trafficking, secretion, and ...
 20-222 2.19e-71

Type III secretory pathway, EscR/YscR component [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443819  Cd Length: 216  Bit Score: 216.58  E-value: 2.19e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502823887  20 VQLLLLLTVFSVAPGILIMMTCFTRIVIVLSFVRTSLGTQQMPPNQILVGLSLFLTFFIMAPTFSQVNEQALQPLLKEKI 99
Cdd:COG4790    8 LSLILLLALLSLLPFLVVMGTSFLKISVVLSLLRNALGVQQVPPNMVLNGIALILTLFVMAPVGQEIYDRLQAAPVDFSS 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502823887 100 T--LNQAYEKAAEPMKEFMSAHTRQKDLALFLEYADIDRP----SSVQDIPLTALVPAYAISELKTAFQIGFMIFIPFLI 173
Cdd:COG4790   88 SasVLEAVDAGLEPLRDFLKKNTDPEERAFFLDAAQRLWPeeyaAKLKPDDLLVLLPAFVLSELTSAFKIGFLLYLPFVV 167

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 502823887 174 IDMIIASVLMSMGMMMLPPVMISLPFKILLFVLVDGWNLVVKSLLISFQ 222
Cdd:COG4790  168 IDLVVSNILLALGMMMVSPMTISLPFKLLLFVLVDGWTLLLHGLVLSYR 216
PRK12430 PRK12430
putative bifunctional flagellar biosynthesis protein FliO/FliP; Provisional
 17-221 7.81e-71

putative bifunctional flagellar biosynthesis protein FliO/FliP; Provisional


Pssm-ID: 237101 [Multi-domain]  Cd Length: 379  Bit Score: 220.53  E-value: 7.81e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502823887  17 STSVQLLLLLTVFSVAPGILIMMTCFTRIVIVLSFVRTSLGTQQMPPNQILVGLSLFLTFFIMAPTFSQVNEQALQPLLK 96
Cdd:PRK12430 173 SVPVQTLVFLTSLTFLPAFLLMMTSFTRIVIVFGLLRNALGTPYAPPNQILLGLALFLTFFIMSPTFDKIYKDAYLPFSQ 252

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502823887  97 EKITLNQAYEKAAEPMKEFMSAHTRQKDLALFLEYADIDRPSSVQDIPLTALVPAYAISELKTAFQIGFMIFIPFLIIDM 176
Cdd:PRK12430 253 EKINMDDAILKGAMPLKKFMLNQTRTPDLELFSKLAHISSYKNKNEIPMRILLPSFITSELKTAFQIGFTIFIPFLIIDL 332

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 502823887 177 IIASVLMSMGMMMLPPVMISLPFKILLFVLVDGWNLVVKSLLISF 221
Cdd:PRK12430 333 VVASVLMALGMMMVPPSTISLPFKLMLFVLVDGWQLLITSLAHSF 377
fliP PRK12783
flagellar biosynthesis protein FliP; Reviewed
 13-221 6.90e-68

flagellar biosynthesis protein FliP; Reviewed


Pssm-ID: 171720  Cd Length: 255  Bit Score: 208.96  E-value: 6.90e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502823887  13 PTNISTS---VQLLLLLTVFSVAPGILIMMTCFTRIVIVLSFVRTSLGTQQMPPNQILVGLSLFLTFFIMAPTFSQVNEQ 89
Cdd:PRK12783  41 PGNGAASgriIQLVALLTVLSLAPGLLVMVTSFTRFAVALSFLRSGLGLQSTPANLFLVSLALFMTFYVMAPTFDRAWNE 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502823887  90 ALQPLLKEKITLNQAYEKAAEPMKEFMSAHTRQKDLALFLEYADIDRPSSVQD--IPLTALVPAYAISELKTAFQIGFMI 167
Cdd:PRK12783 121 GVKPLQENRISEEEAFGKIVDPFREFMTQHVRPKDLQTFTDLASRSFPKAEAGekIDLRILIPAFMISELRRGFEIGFLI 200

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 502823887 168 FIPFLIIDMIIASVLMSMGMMMLPPVMISLPFKILLFVLVDGWNLVVKSLLISF 221
Cdd:PRK12783 201 VLPFLVIDMIVATIVMSMGMMMLPPTVISLPFKVLFFVLIDGWNLLVSGLVRSF 254
PRK12797 PRK12797
type III secretion system protein YscR; Provisional
 13-219 2.28e-60

type III secretion system protein YscR; Provisional


Pssm-ID: 237210  Cd Length: 213  Bit Score: 188.16  E-value: 2.28e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502823887  13 PTNISTSVQLLLLLTVFSVAPGILIMMTCFTRIVIVLSFVRTSLGTQQMPPNQILVGLSLFLTFFIMAPTFSQVNEQALQ 92
Cdd:PRK12797   1 MEQLPDPLQLIILLALLSLLPLIAVMGTSFLKISVVLSLLRNALGVQQVPPNMALYGLALILTLFVMAPVGLAIQDRLQQ 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502823887  93 PLLK--EKITLNQAYEKAAEPMKEFMSAHTRQKDLALFLEYADIDRPS----SVQDIPLTALVPAYAISELKTAFQIGFM 166
Cdd:PRK12797  81 PPLSlqDPDSVLQLLDAALAPLRDFLKKHTDERERTFFVRSAQRIWPEeaadSLKKDDLLILIPAFTLSELTRAFEIGFL 160

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 502823887 167 IFIPFLIIDMIIASVLMSMGMMMLPPVMISLPFKILLFVLVDGWNLVVKSLLI 219
Cdd:PRK12797 161 LYLPFIVIDLIISNILLAMGMMMVSPTTISLPFKLLLFVLVDGWSRLLHGLVL 213
yscR TIGR01102
type III secretion apparatus protein, YscR/HrcR family; This model identifies the generic ...
 22-217 3.10e-50

type III secretion apparatus protein, YscR/HrcR family; This model identifies the generic virulence translocation proteins in bacteria. It derives its name:'Yop' from Yersinia enterocolitica species, where this virulence protein was identified. In bacterial pathogenesis, Yop effector proteins are translocated into the eukaryotic cells. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 130172  Cd Length: 202  Bit Score: 162.13  E-value: 3.10e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502823887   22 LLLLLTVFSVAPGILIMMTCFTRIVIVLSFVRTSLGTQQMPPNQILVGLSLFLTFFIMAPTFSQVNEQALQPLLK--EKI 99
Cdd:TIGR01102   1 LIAVLAALSLLPFIIVVGTSFLKISVVLGILRNALGVQQVPPNMALYGIALILSMFVMAPVGHQAQDRFHQEPVAysNID 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502823887  100 TLNQAYEKAAEPMKEFMSAHTRQKDLALFLEYADIDRPSSVQDI----PLTALVPAYAISELKTAFQIGFMIFIPFLIID 175
Cdd:TIGR01102  81 FLQKSLDAGLAPYREFLKKNTDEDEVAFFERSTQKMWPKEMADRlkkdSLLILLPAFTLSELTAAFKIGFLLYLPFIVID 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 502823887  176 MIIASVLMSMGMMMLPPVMISLPFKILLFVLVDGWNLVVKSL 217
Cdd:TIGR01102 161 LIVSNILLALGMMMVSPMTISLPFKLLLFVLIDGWSRLLHGL 202
PRK09617 PRK09617
type III secretion system protein; Reviewed
 24-222 1.46e-48

type III secretion system protein; Reviewed


Pssm-ID: 236593  Cd Length: 243  Bit Score: 159.14  E-value: 1.46e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502823887  24 LLLTVFSVAPGILIMMTCFTRIVIVLSFVRTSLGTQQMPPNQILVGLSLFLTFFIMAPTFSQVNEQALQPLLKEKI---- 99
Cdd:PRK09617  30 VILIFLALSPFLVMLLTSFLKIIIVLSLLRNALGVQQTPPSQVLNGIALILSIYIMFPTGVAMYNDAQKGIESNAVprsl 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502823887 100 -------TLNQAYEKAAEPMKEFMSAHTRQKDLALFLEYADIDRPSSVQDI----PLTALVPAYAISELKTAFQIGFMIF 168
Cdd:PRK09617 110 fsaegaeTVFVAANKSKEPLRSFLIKNTPKPQIASFYKISQKTFPPEIRDAltpsDFMIIIPAFIMGQLKNAFEIGVLIY 189

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 502823887 169 IPFLIIDMIIASVLMSMGMMMLPPVMISLPFKILLFVLVDGWNLVVKSLLISFQ 222
Cdd:PRK09617 190 LPFFVIDLVTANVLLAMGMMMLSPLSISLPLKLLLVVMVDGWTLLLEGLMISFK 243
spaP PRK12796
EscR/YscR/HrcR family type III secretion system export apparatus protein;
17-218 1.90e-40

EscR/YscR/HrcR family type III secretion system export apparatus protein;


Pssm-ID: 237209  Cd Length: 221  Bit Score: 137.81  E-value: 1.90e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502823887  17 STSVQLLLLLTVFSVAPGILIMMTCFTRIVIVLSFVRTSLGTQQMPPNQILVGLSLFLTFFIMAPTFSQVNE--QALQPL 94
Cdd:PRK12796   2 NNDISLIALLSFFTLLPFIIASGTCFIKFSIVFVMVRNALGLQQVPSNMTLNGIALLLSMFVMMPVIQDIYVyfQNEPVD 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502823887  95 LKEKITLNQAYEKAAEPMKEFMsAHTRQKDLALFLEYADIDRPSSVQD---------IPLTALVPAYAISELKTAFQIGF 165
Cdd:PRK12796  82 FNNIASVVKFVDEGLGGYRDYL-IKYSDPELVRFFERAQKKRSYGDEAeandhdkdeISLFSLLPAYALSEIKSAFKIGF 160

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 502823887 166 MIFIPFLIIDMIIASVLMSMGMMMLPPVMISLPFKILLFVLVDGWNLVVKSLL 218
Cdd:PRK12796 161 YLYLPFVVVDLVVSSVLLALGMMMMSPVTISVPIKLILFVAMDGWTLLSKGLI 213
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH