|
Name |
Accession |
Description |
Interval |
E-value |
| RsmD |
COG0742 |
16S rRNA G966 N2-methylase RsmD [Translation, ribosomal structure and biogenesis]; 16S rRNA ... |
1-185 |
2.51e-80 |
|
16S rRNA G966 N2-methylase RsmD [Translation, ribosomal structure and biogenesis]; 16S rRNA G966 N2-methylase RsmD is part of the Pathway/BioSystem: 16S rRNA modification
Pssm-ID: 440505 [Multi-domain] Cd Length: 183 Bit Score: 236.52 E-value: 2.51e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502824007 1 MRVVAGLYKGHALKAVPGYSTRPTTDKVKEAIFNMIGPFFEGGTALDLFGGSGGLGIEALSRGIDKVIFVDRDGKAIQTI 80
Cdd:COG0742 1 MRIIGGKARGRKLKVPKGPGTRPTTDRVREALFNILGPDIEGARVLDLFAGSGALGLEALSRGAASVVFVEKDRKAAAVI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502824007 81 KANLASCRLEDRAEVYRNDAERALKAIKKRelTVDLLLLDPPYKAQKLKALIETVSEENLLAKTGIIVAEHSHDVQLDNE 160
Cdd:COG0742 81 RKNLEKLGLEDRARVIRGDALRFLKRLAGE--PFDLVFLDPPYAKGLLEKALELLAENGLLAPGGLIVVEHSKREELPEL 158
|
170 180
....*....|....*....|....*
gi 502824007 161 IGLFEKIKSETYGIIGVSIYTYKKE 185
Cdd:COG0742 159 PAGLELLKERKYGDTRLSFYRREEE 183
|
|
| Cons_hypoth95 |
pfam03602 |
Conserved hypothetical protein 95; |
1-180 |
7.48e-65 |
|
Conserved hypothetical protein 95;
Pssm-ID: 427391 [Multi-domain] Cd Length: 179 Bit Score: 197.08 E-value: 7.48e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502824007 1 MRVVAGLYKGHALKAVPGYSTRPTTDKVKEAIFNMIGPFFEGGTALDLFGGSGGLGIEALSRGIDKVIFVDRDGKAIQTI 80
Cdd:pfam03602 1 MRIIGGKARGRKLKVPPGPGTRPTTDRVREALFNWLAPYIEGARVLDLFAGSGALGLEALSRGAKRVTLVEKDKRAVQIL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502824007 81 KANLASCRLEDRaeVYRNDAERALKAIKKRELTVDLLLLDPPYKAQKLKALIETVSEENLLAKTGIIVAEHSHDVQLDNE 160
Cdd:pfam03602 81 KENLQLLGLPGA--VLVMDALLALLRLAGKGPVFDIVFLDPPYAKGLIEEVLDLLAEKGWLKPNALIYVETEKRGELPEQ 158
|
170 180
....*....|....*....|
gi 502824007 161 IGLFEKIKSETYGIIGVSIY 180
Cdd:pfam03602 159 PGNLELVREKKYGQTTLAFY 178
|
|
| TIGR00095 |
TIGR00095 |
16S rRNA (guanine(966)-N(2))-methyltransferase RsmD; This model represents a family of ... |
2-180 |
2.30e-59 |
|
16S rRNA (guanine(966)-N(2))-methyltransferase RsmD; This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. [Protein synthesis, tRNA and rRNA base modification]
Pssm-ID: 188022 [Multi-domain] Cd Length: 190 Bit Score: 183.76 E-value: 2.30e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502824007 2 RVVAGLYKGHALKAVPGYSTRPTTDKVKEAIFNMIGPFFEGGTALDLFGGSGGLGIEALSRGIDKVIFVDRDGKAIQTIK 81
Cdd:TIGR00095 11 RIIGGQYRGRKLKVPPGPSTRPTTDRVRESLFNILRPDIVGAHFLDLFAGSGALGLEALSRGAASAVFVEQDRKVAQTLK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502824007 82 ANLASCRLEDRAEVYRNDAERALKAIKKRELTVDLLLLDPPYKAQKLKALIETVSEENLLAKTGIIVAEHSHDVQLDNEI 161
Cdd:TIGR00095 91 ENLSTLKKSGEQATVLNDAVRALLFLAKKQTPFDIIYLDPPFNRGLLEALLELLGENKWLNPKGLIVVEYDRENELPTVP 170
|
170
....*....|....*....
gi 502824007 162 GLFEKIKSETYGIIGVSIY 180
Cdd:TIGR00095 171 ETWSLLRQKVYGQSALRLY 189
|
|
| rsmD |
PRK10909 |
16S rRNA m(2)G966-methyltransferase; Provisional |
1-150 |
1.68e-19 |
|
16S rRNA m(2)G966-methyltransferase; Provisional
Pssm-ID: 236793 Cd Length: 199 Bit Score: 81.69 E-value: 1.68e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502824007 1 MRVVAGLYKGHALKAVPGYSTRPTTDKVKEAIFNMIGPFFEGGTALDLFGGSGGLGIEALSRGIDKVIFVDRDGKAIQTI 80
Cdd:PRK10909 13 IRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQL 92
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502824007 81 KANLASCRlEDRAEVYRNDaerALKAIKKRELTVDLLLLDPPYKAQKLKALIETVSEENLLAKTGIIVAE 150
Cdd:PRK10909 93 IKNLATLK-AGNARVVNTN---ALSFLAQPGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVE 158
|
|
| AdoMet_MTases |
cd02440 |
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ... |
44-150 |
2.12e-08 |
|
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Pssm-ID: 100107 [Multi-domain] Cd Length: 107 Bit Score: 50.12 E-value: 2.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502824007 44 TALDLFGGSGGLGIEALSRGIDKVIFVDRDGKAIQTIKANLAsCRLEDRAEVYRNDAERALKAIKKReltVDLLLLDPPY 123
Cdd:cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAA-ALLADNVEVLKGDAEELPPEADES---FDVIISDPPL 76
|
90 100
....*....|....*....|....*....
gi 502824007 124 KAQK--LKALIETVSEenLLAKTGIIVAE 150
Cdd:cd02440 77 HHLVedLARFLEEARR--LLKPGGVLVLT 103
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| RsmD |
COG0742 |
16S rRNA G966 N2-methylase RsmD [Translation, ribosomal structure and biogenesis]; 16S rRNA ... |
1-185 |
2.51e-80 |
|
16S rRNA G966 N2-methylase RsmD [Translation, ribosomal structure and biogenesis]; 16S rRNA G966 N2-methylase RsmD is part of the Pathway/BioSystem: 16S rRNA modification
Pssm-ID: 440505 [Multi-domain] Cd Length: 183 Bit Score: 236.52 E-value: 2.51e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502824007 1 MRVVAGLYKGHALKAVPGYSTRPTTDKVKEAIFNMIGPFFEGGTALDLFGGSGGLGIEALSRGIDKVIFVDRDGKAIQTI 80
Cdd:COG0742 1 MRIIGGKARGRKLKVPKGPGTRPTTDRVREALFNILGPDIEGARVLDLFAGSGALGLEALSRGAASVVFVEKDRKAAAVI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502824007 81 KANLASCRLEDRAEVYRNDAERALKAIKKRelTVDLLLLDPPYKAQKLKALIETVSEENLLAKTGIIVAEHSHDVQLDNE 160
Cdd:COG0742 81 RKNLEKLGLEDRARVIRGDALRFLKRLAGE--PFDLVFLDPPYAKGLLEKALELLAENGLLAPGGLIVVEHSKREELPEL 158
|
170 180
....*....|....*....|....*
gi 502824007 161 IGLFEKIKSETYGIIGVSIYTYKKE 185
Cdd:COG0742 159 PAGLELLKERKYGDTRLSFYRREEE 183
|
|
| Cons_hypoth95 |
pfam03602 |
Conserved hypothetical protein 95; |
1-180 |
7.48e-65 |
|
Conserved hypothetical protein 95;
Pssm-ID: 427391 [Multi-domain] Cd Length: 179 Bit Score: 197.08 E-value: 7.48e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502824007 1 MRVVAGLYKGHALKAVPGYSTRPTTDKVKEAIFNMIGPFFEGGTALDLFGGSGGLGIEALSRGIDKVIFVDRDGKAIQTI 80
Cdd:pfam03602 1 MRIIGGKARGRKLKVPPGPGTRPTTDRVREALFNWLAPYIEGARVLDLFAGSGALGLEALSRGAKRVTLVEKDKRAVQIL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502824007 81 KANLASCRLEDRaeVYRNDAERALKAIKKRELTVDLLLLDPPYKAQKLKALIETVSEENLLAKTGIIVAEHSHDVQLDNE 160
Cdd:pfam03602 81 KENLQLLGLPGA--VLVMDALLALLRLAGKGPVFDIVFLDPPYAKGLIEEVLDLLAEKGWLKPNALIYVETEKRGELPEQ 158
|
170 180
....*....|....*....|
gi 502824007 161 IGLFEKIKSETYGIIGVSIY 180
Cdd:pfam03602 159 PGNLELVREKKYGQTTLAFY 178
|
|
| TIGR00095 |
TIGR00095 |
16S rRNA (guanine(966)-N(2))-methyltransferase RsmD; This model represents a family of ... |
2-180 |
2.30e-59 |
|
16S rRNA (guanine(966)-N(2))-methyltransferase RsmD; This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. [Protein synthesis, tRNA and rRNA base modification]
Pssm-ID: 188022 [Multi-domain] Cd Length: 190 Bit Score: 183.76 E-value: 2.30e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502824007 2 RVVAGLYKGHALKAVPGYSTRPTTDKVKEAIFNMIGPFFEGGTALDLFGGSGGLGIEALSRGIDKVIFVDRDGKAIQTIK 81
Cdd:TIGR00095 11 RIIGGQYRGRKLKVPPGPSTRPTTDRVRESLFNILRPDIVGAHFLDLFAGSGALGLEALSRGAASAVFVEQDRKVAQTLK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502824007 82 ANLASCRLEDRAEVYRNDAERALKAIKKRELTVDLLLLDPPYKAQKLKALIETVSEENLLAKTGIIVAEHSHDVQLDNEI 161
Cdd:TIGR00095 91 ENLSTLKKSGEQATVLNDAVRALLFLAKKQTPFDIIYLDPPFNRGLLEALLELLGENKWLNPKGLIVVEYDRENELPTVP 170
|
170
....*....|....*....
gi 502824007 162 GLFEKIKSETYGIIGVSIY 180
Cdd:TIGR00095 171 ETWSLLRQKVYGQSALRLY 189
|
|
| rsmD |
PRK10909 |
16S rRNA m(2)G966-methyltransferase; Provisional |
1-150 |
1.68e-19 |
|
16S rRNA m(2)G966-methyltransferase; Provisional
Pssm-ID: 236793 Cd Length: 199 Bit Score: 81.69 E-value: 1.68e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502824007 1 MRVVAGLYKGHALKAVPGYSTRPTTDKVKEAIFNMIGPFFEGGTALDLFGGSGGLGIEALSRGIDKVIFVDRDGKAIQTI 80
Cdd:PRK10909 13 IRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQL 92
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502824007 81 KANLASCRlEDRAEVYRNDaerALKAIKKRELTVDLLLLDPPYKAQKLKALIETVSEENLLAKTGIIVAE 150
Cdd:PRK10909 93 IKNLATLK-AGNARVVNTN---ALSFLAQPGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVE 158
|
|
| Trm11 |
COG1041 |
tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]; tRNA G10 ... |
41-148 |
1.31e-12 |
|
tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]; tRNA G10 N-methylase Trm11 is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 440663 [Multi-domain] Cd Length: 172 Bit Score: 62.66 E-value: 1.31e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502824007 41 EGGTALDLFGGSGGLGIEALSRGIDkVIFVDRDGKAIQTIKANLASCRLEDrAEVYRNDAERalkaIKKRELTVDLLLLD 120
Cdd:COG1041 26 EGDTVLDPFCGTGTILIEAGLLGRR-VIGSDIDPKMVEGARENLEHYGYED-ADVIRGDARD----LPLADESVDAIVTD 99
|
90 100 110
....*....|....*....|....*....|....*.
gi 502824007 121 PPY------KAQKLKALIETVSEE--NLLAKTGIIV 148
Cdd:COG1041 100 PPYgrsskiSGEELLELYEKALEEaaRVLKPGGRVV 135
|
|
| RlmK |
COG1092 |
23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI [Translation, ribosomal structure ... |
35-122 |
1.47e-10 |
|
23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI [Translation, ribosomal structure and biogenesis]; 23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI is part of the Pathway/BioSystem: 23S rRNA modification
Pssm-ID: 440709 [Multi-domain] Cd Length: 392 Bit Score: 59.04 E-value: 1.47e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502824007 35 MIGPFFEGGTALDLFGGSGGLGIEALSRGIDKVIFVDRDGKAIQTIKANLASCRLEDRAEVYRNDAERALKAIKKRELTV 114
Cdd:COG1092 210 RVAELAKGKRVLNLFSYTGGFSVHAAAGGAKSVTSVDLSATALEWAKENAALNGLDDRHEFVQADAFDWLRELAREGERF 289
|
....*...
gi 502824007 115 DLLLLDPP 122
Cdd:COG1092 290 DLIILDPP 297
|
|
| TrmA |
COG2265 |
tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family [Translation, ribosomal structure ... |
41-122 |
1.33e-08 |
|
tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family [Translation, ribosomal structure and biogenesis]; tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 441866 [Multi-domain] Cd Length: 377 Bit Score: 53.26 E-value: 1.33e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502824007 41 EGGTALDLFGGSGGLGIeALSRGIDKVIFVDRDGKAIQTIKANLASCRLeDRAEVYRNDAERALKAIKKRElTVDLLLLD 120
Cdd:COG2265 233 GGERVLDLYCGVGTFAL-PLARRAKKVIGVEIVPEAVEDARENARLNGL-KNVEFVAGDLEEVLPELLWGG-RPDVVVLD 309
|
..
gi 502824007 121 PP 122
Cdd:COG2265 310 PP 311
|
|
| AdoMet_MTases |
cd02440 |
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ... |
44-150 |
2.12e-08 |
|
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Pssm-ID: 100107 [Multi-domain] Cd Length: 107 Bit Score: 50.12 E-value: 2.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502824007 44 TALDLFGGSGGLGIEALSRGIDKVIFVDRDGKAIQTIKANLAsCRLEDRAEVYRNDAERALKAIKKReltVDLLLLDPPY 123
Cdd:cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAA-ALLADNVEVLKGDAEELPPEADES---FDVIISDPPL 76
|
90 100
....*....|....*....|....*....
gi 502824007 124 KAQK--LKALIETVSEenLLAKTGIIVAE 150
Cdd:cd02440 77 HHLVedLARFLEEARR--LLKPGGVLVLT 103
|
|
| COG2263 |
COG2263 |
Predicted RNA methylase [General function prediction only]; |
40-127 |
6.15e-08 |
|
Predicted RNA methylase [General function prediction only];
Pssm-ID: 441864 [Multi-domain] Cd Length: 199 Bit Score: 50.29 E-value: 6.15e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502824007 40 FEGGTALDLFGGSGGLGIEALSRGIDKVIFVDRDGKAIQTIKANLAscRLEDRAEVYRNDAERAlkaikKRELTVDLLLL 119
Cdd:COG2263 44 IEGKTVLDLGCGTGMLAIGAALLGAKKVVGVDIDPEALEIARENAE--RLGVRVDFIRADVTRI-----PLGGSVDTVVM 116
|
....*...
gi 502824007 120 DPPYKAQK 127
Cdd:COG2263 117 NPPFGAQR 124
|
|
| PRK14967 |
PRK14967 |
putative methyltransferase; Provisional |
5-123 |
8.10e-07 |
|
putative methyltransferase; Provisional
Pssm-ID: 184931 [Multi-domain] Cd Length: 223 Bit Score: 47.35 E-value: 8.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502824007 5 AGLYKGHALKAVPG-YstRPTTDK---VKEAIFNMIGPffeGGTALDLFGGSGGLGIEALSRGIDKVIFVDRDGKAIQTI 80
Cdd:PRK14967 1 AATTPPDALLRAPGvY--RPQEDTqllADALAAEGLGP---GRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSA 75
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 502824007 81 KANLASCRLedRAEVYRNDAERALkaikkRELTVDLLLLDPPY 123
Cdd:PRK14967 76 RLNALLAGV--DVDVRRGDWARAV-----EFRPFDVVVSNPPY 111
|
|
| UPF0020 |
pfam01170 |
Putative RNA methylase family UPF0020; This domain is probably a methylase. It is associated ... |
41-123 |
5.94e-06 |
|
Putative RNA methylase family UPF0020; This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains.
Pssm-ID: 395932 [Multi-domain] Cd Length: 184 Bit Score: 44.65 E-value: 5.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502824007 41 EGGTALDLFGGSGGLGIEA------------LSRGIDKVIFVDRDGKAIQTIKANLASCRLEDRAEVYRNDAeralKAIK 108
Cdd:pfam01170 28 PGDPLLDPMCGSGTILIEAalmganiapgkfDARVRAPLYGSDIDRRMVQGARLNAENAGVGDLIEFVQADA----ADLP 103
|
90
....*....|....*
gi 502824007 109 KRELTVDLLLLDPPY 123
Cdd:pfam01170 104 LLEGSVDVIVTNPPY 118
|
|
| PRK15128 |
PRK15128 |
23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI; |
39-122 |
1.53e-05 |
|
23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI;
Pssm-ID: 185082 [Multi-domain] Cd Length: 396 Bit Score: 44.44 E-value: 1.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502824007 39 FFEGGTALDLFGGSGGLGIEALSRGIDKVIFVDRDGKAIQTIKANLASCRLE-DRAEVYRNDAERALKAIKKRELTVDLL 117
Cdd:PRK15128 218 YVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDlSKAEFVRDDVFKLLRTYRDRGEKFDVI 297
|
....*
gi 502824007 118 LLDPP 122
Cdd:PRK15128 298 VMDPP 302
|
|
| RsmC |
COG2813 |
16S rRNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]; 16S rRNA ... |
38-126 |
4.42e-05 |
|
16S rRNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]; 16S rRNA G1207 methylase RsmC is part of the Pathway/BioSystem: 16S rRNA modification
Pssm-ID: 442062 [Multi-domain] Cd Length: 191 Bit Score: 42.10 E-value: 4.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502824007 38 PFFEGGTALDLFGGSGGLGIEALSRG-IDKVIFVDRDGKAIQTIKANLASCRLEDrAEVYRNDAERALKaikkrELTVDL 116
Cdd:COG2813 46 PEPLGGRVLDLGCGYGVIGLALAKRNpEARVTLVDVNARAVELARANAAANGLEN-VEVLWSDGLSGVP-----DGSFDL 119
|
90
....*....|
gi 502824007 117 LLLDPPYKAQ 126
Cdd:COG2813 120 ILSNPPFHAG 129
|
|
| COG4076 |
COG4076 |
Predicted RNA methylase [General function prediction only]; |
29-100 |
6.11e-05 |
|
Predicted RNA methylase [General function prediction only];
Pssm-ID: 443253 [Multi-domain] Cd Length: 230 Bit Score: 41.95 E-value: 6.11e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 502824007 29 KEAIFNMIGPffeGGTALDLFGGSGGLGIEALSRGIDKVIFVDRDGKAIQTIKANLASCRLEDRAEVYRNDA 100
Cdd:COG4076 26 KAAIERVVKP---GDVVLDIGTGSGLLSMLAARAGAKKVYAVEVNPDIAAVARRIIAANGLSDRITVINADA 94
|
|
| PRK04338 |
PRK04338 |
N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional |
31-144 |
7.63e-04 |
|
N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Pssm-ID: 235286 Cd Length: 382 Bit Score: 39.13 E-value: 7.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502824007 31 AIFNMIGPFFEGGTALDLFGGSGGLGIE-ALSRGIDKVIFVDRDGKAIQTIKANLASCRLEDRaEVYRNDAERALKAIKK 109
Cdd:PRK04338 47 LVLRAFGPKLPRESVLDALSASGIRGIRyALETGVEKVTLNDINPDAVELIKKNLELNGLENE-KVFNKDANALLHEERK 125
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 502824007 110 reltVDLLLLDP-----PYkaqkLKALIETVSEENLLAKT 144
Cdd:PRK04338 126 ----FDVVDIDPfgspaPF----LDSAIRSVKRGGLLCVT 157
|
|
| PrmA |
COG2264 |
Ribosomal protein L11 methylase PrmA [Translation, ribosomal structure and biogenesis]; |
40-148 |
8.74e-04 |
|
Ribosomal protein L11 methylase PrmA [Translation, ribosomal structure and biogenesis];
Pssm-ID: 441865 [Multi-domain] Cd Length: 284 Bit Score: 39.00 E-value: 8.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502824007 40 FEGGTALDlFG-GSGGLGIEALSRGIDKVIFVDRDGKAIQTIKANLASCRLEDRAEVYRNDAERALKAikkreltvDLL- 117
Cdd:COG2264 147 KPGKTVLD-VGcGSGILAIAAAKLGAKRVLAVDIDPVAVEAARENAELNGVEDRIEVVLGDLLEDGPY--------DLVv 217
|
90 100 110
....*....|....*....|....*....|....
gi 502824007 118 ---LLDPpykaqkLKALIETVSeeNLLAKTGIIV 148
Cdd:COG2264 218 aniLANP------LIELAPDLA--ALLKPGGYLI 243
|
|
| RsmJ |
pfam04378 |
Ribosomal RNA large subunit methyltransferase D, RlmJ; RlmJ is ribosomal RNA large subunit ... |
30-127 |
1.09e-03 |
|
Ribosomal RNA large subunit methyltransferase D, RlmJ; RlmJ is ribosomal RNA large subunit methyltransferase J is required for full methylation of 23S ribosomal RNA (rRNA) during ribosome biogenesis. The ribosomal RNA of E. coli carries 24 residues that require methylation, and this methyltransferase is the last to be described, that modifies A2030. RlmJ displays a variant of the Rossmann-like methyltransferase (MTase) fold with an inserted helical subdomain. On binding cofactor and substrate a large shift of the N-terminal motif X tail is induced in order to make it cover the cofactor-binding site and to trigger active-site changes in motifs IV and VIII.
Pssm-ID: 398191 Cd Length: 245 Bit Score: 38.60 E-value: 1.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502824007 30 EAIFNMIGPFFEGGTaLDLFGGSGGLGIEALsRGIDKVIFVDRDGKAIQTIKANLASCRledRAEVYRNDAERALKAIKK 109
Cdd:pfam04378 47 DRYLDVIRQLNGGGT-LRYYPGSPLLAARLL-RAQDRMVLTELHPSDYPLLRANFAPDR---RVRVHQGDGFAQVKAFLP 121
|
90
....*....|....*...
gi 502824007 110 RELTVDLLLLDPPYKAQK 127
Cdd:pfam04378 122 PKERRGLVLIDPPYELAD 139
|
|
| cbiT |
PRK00377 |
cobalt-precorrin-6Y C(15)-methyltransferase; Provisional |
40-150 |
1.14e-03 |
|
cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Pssm-ID: 234740 Cd Length: 198 Bit Score: 38.24 E-value: 1.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502824007 40 FEGGTALDLFGGSGGLGIEA--LSRGIDKVIFVDRDGKAIQTIKANLASCRLEDRAEVYRNDAERALKAIKKReltVDLL 117
Cdd:PRK00377 39 RKGDMILDIGCGTGSVTVEAslLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEK---FDRI 115
|
90 100 110
....*....|....*....|....*....|...
gi 502824007 118 LLDPpyKAQKLKALIETVSEenLLAKTGIIVAE 150
Cdd:PRK00377 116 FIGG--GSEKLKEIISASWE--IIKKGGRIVID 144
|
|
| MTS |
pfam05175 |
Methyltransferase small domain; This domain is found in ribosomal RNA small subunit ... |
42-127 |
2.46e-03 |
|
Methyltransferase small domain; This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases.
Pssm-ID: 428349 [Multi-domain] Cd Length: 170 Bit Score: 36.80 E-value: 2.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502824007 42 GGTALDLFGGSGGLGIEALSRGID-KVIFVDRDGKAIQTIKANLASCRLEDrAEVYRNDAERALKAIKkreltVDLLLLD 120
Cdd:pfam05175 32 SGKVLDLGCGAGVLGAALAKESPDaELTMVDINARALESARENLAANGLEN-GEVVASDVYSGVEDGK-----FDLIISN 105
|
....*..
gi 502824007 121 PPYKAQK 127
Cdd:pfam05175 106 PPFHAGL 112
|
|
| PRK14968 |
PRK14968 |
putative methyltransferase; Provisional |
41-123 |
2.85e-03 |
|
putative methyltransferase; Provisional
Pssm-ID: 237872 [Multi-domain] Cd Length: 188 Bit Score: 36.80 E-value: 2.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502824007 41 EGGTALDLFGGSGGLGIEALSRGIDkVIFVDRDGKAIQTIKANLASCRLEDRA-EVYRNDAERALKAIKkreltVDLLLL 119
Cdd:PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNGKK-VVGVDINPYAVECAKCNAKLNNIRNNGvEVIRSDLFEPFRGDK-----FDVILF 96
|
....
gi 502824007 120 DPPY 123
Cdd:PRK14968 97 NPPY 100
|
|
| Methyltransf_15 |
pfam09445 |
RNA cap guanine-N2 methyltransferase; RNA cap guanine-N2 methyltransferases such as ... |
42-123 |
3.03e-03 |
|
RNA cap guanine-N2 methyltransferase; RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe Tgs1 and Giardia lamblia Tgs2 catalyze methylation of the exocyclic N2 amine of 7-methylguanosine.
Pssm-ID: 370496 Cd Length: 165 Bit Score: 36.54 E-value: 3.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502824007 42 GGTALDLFGGSGGLGIeALSRGIDKVIFVDRDGKAIQTIKANLASCRLEDRAEVYRNDAERALKAIKKRELTVDLLLLDP 121
Cdd:pfam09445 1 ATRILDVFCGGGGNTI-QFANVFDSVISIDINLEHLACAQHNAEVYGVSDRIWLIHGDWFELLAKLKFEKIKYDCVFASP 79
|
..
gi 502824007 122 PY 123
Cdd:pfam09445 80 PW 81
|
|
| CbiT |
TIGR02469 |
precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; This model recognizes ... |
42-108 |
3.95e-03 |
|
precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]
Pssm-ID: 274148 [Multi-domain] Cd Length: 124 Bit Score: 35.77 E-value: 3.95e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 502824007 42 GGTALDLFGGSGGLGIEALSR-GIDKVIFVDRDGKAIQTIKANLASCRLeDRAEVYRNDAERALKAIK 108
Cdd:TIGR02469 20 GDVLWDIGAGTGSVTIEAARLvPNGRVYAIERNPEALDLIERNLRRFGV-SNIVIVEGDAPEAPEALL 86
|
|
| CobL |
COG2242 |
Precorrin-6B methylase 2 [Coenzyme transport and metabolism]; Precorrin-6B methylase 2 is part ... |
41-174 |
5.54e-03 |
|
Precorrin-6B methylase 2 [Coenzyme transport and metabolism]; Precorrin-6B methylase 2 is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis
Pssm-ID: 441843 [Multi-domain] Cd Length: 403 Bit Score: 36.68 E-value: 5.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502824007 41 EGGTALDLFGGSGGLGIEA--LSRGIdKVIFVDRDGKAIQTIKANLASCRLeDRAEVYRNDAERALKAikkreltvdlll 118
Cdd:COG2242 247 PGDVLWDIGAGSGSVSIEAarLAPGG-RVYAIERDPERAALIRANARRFGV-PNVEVVEGEAPEALAD------------ 312
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 502824007 119 LDPPYKA------QKLKALIETVSEenLLAKTGIIVAehsHDVQLDNEIGLFEKIKSETYGI 174
Cdd:COG2242 313 LPDPDAVfiggsgGNLPEILEACWA--RLRPGGRLVA---NAVTLETLALALEALAELGYGG 369
|
|
| |
