|
Name |
Accession |
Description |
Interval |
E-value |
| SpoU |
COG0566 |
tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA ... |
3-260 |
9.81e-70 |
|
tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA G18 (ribose-2'-O)-methylase SpoU is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 440332 [Multi-domain] Cd Length: 265 Bit Score: 215.45 E-value: 9.81e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502826053 3 TPLSNRRRKAIAALTRRRGRRRHDRTLVEGPRALRAALDADAPLVEVVVTPEGRGD-PTVQALLEQLSVSVHETDPDTMT 81
Cdd:COG0566 2 TSPSNPRVKDLRKLRDKKYREEEGLFLAEGRHAVEEALKAGREIEELLVTEGALDRlAELLALAKAAGIPVYEVSREVLD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502826053 82 TLTDVETPQGVVAVAER-RLRDPETVPEQIGEAGTVLVLDGIQDPGNVGTLLRTAAWFGAQAVVAGPGTAGLYGPKVMRA 160
Cdd:COG0566 82 KLSGTETHQGVLAVVRPpEYADLEDLLAEAGEPPLLLVLDGVQDPGNLGAILRSAAAFGVDGVILPKRRADPYNPKVVRA 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502826053 161 GAGSHWALPLARTDAPGPFLDRLRRHGAALYGADLQGTRA-DAWGPDRPSALVLGSEAHGLSAAVLDRLDLTVSLPGApd 239
Cdd:COG0566 162 SAGALFHVPVARVTNLADALEELKEAGFWVVGTDLDGEASlYEVDLPGPVALVLGNEGKGLSRLVLEACDELVRIPMA-- 239
|
250 260
....*....|....*....|.
gi 502826053 240 rPAAESLNVAVAGGILLYEWL 260
Cdd:COG0566 240 -GGVESLNVAVAAAILLYEAA 259
|
|
| SpoU-like_rRNA-MTase |
cd18095 |
SAM-dependent rRNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes ... |
116-259 |
4.99e-59 |
|
SAM-dependent rRNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349968 Cd Length: 143 Bit Score: 183.78 E-value: 4.99e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502826053 116 VLVLDGIQDPGNVGTLLRTAAWFGAQAVVAGPGTAGLYGPKVMRAGAGSHWALPLARTDAPGPFLDRLRRHGAALYGADL 195
Cdd:cd18095 2 VLVLDGVQDPGNLGTIIRTAAAFGVDGVILSKGTVDPYNPKVVRASMGALFRLPIIRVDDLEELLEELKEAGYKVVAADL 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 502826053 196 QGTRA-DAWGPDRPSALVLGSEAHGLSAAVLDRLDLTVSLPGAPDrpaAESLNVAVAGGILLYEW 259
Cdd:cd18095 82 DGGSSlYDLDLPKPVALVLGNEGNGLSDELLELCDKRVTIPMSGG---VESLNVAVAAAILLYEL 143
|
|
| SpoU_methylase |
pfam00588 |
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet. |
116-257 |
8.82e-44 |
|
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet.
Pssm-ID: 425768 Cd Length: 142 Bit Score: 144.98 E-value: 8.82e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502826053 116 VLVLDGIQDPGNVGTLLRTAAWFGAQAVV-AGPGTAGLYGPKVMRAGAGSHWALPLARTDAPGPFLDRLRRHGAALYGAD 194
Cdd:pfam00588 3 VVVLDNIQDPGNLGAIIRTAAAFGADGLIlVEPRSADPYNPKAIRASAGALFHLPLVVVDNLEEALKDLKEAGYAVVATS 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 502826053 195 LQGTRADAWGPDRPSALVLGSEAHGLSAAVLDRLDLTVSLPGAPDrpaAESLNVAVAGGILLY 257
Cdd:pfam00588 83 LGGKSLYEIDFPKKVALVFGNEGTGLSNEVLELCDRLVRIPMSGD---VESLNVAVAAAIALY 142
|
|
| rRNA_methyl_3 |
TIGR00186 |
rRNA methylase, putative, group 3; this is part of the trmH (spoU) family of rRNA methylases ... |
64-260 |
4.38e-33 |
|
rRNA methylase, putative, group 3; this is part of the trmH (spoU) family of rRNA methylases [Protein synthesis, tRNA and rRNA base modification]
Pssm-ID: 129290 [Multi-domain] Cd Length: 237 Bit Score: 120.53 E-value: 4.38e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502826053 64 LLEQLSVSVHETDPDTMTTLTDVETPQGVVA-VAERRLRDPETVPEQI--GEAGTVLVLDGIQDPGNVGTLLRTAAWFGA 140
Cdd:TIGR00186 37 LAKKQGINIQLVDRQKLDQLTKGGNHQGIAAkVKPILYKDLNDLYKTAksKKQPFLLILDEITDPHNLGAILRTAEAFGV 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502826053 141 QAVVAGPGTAGLYGPKVMRAGAGSHWALPLARTDAPGPFLDRLRRHGAALYGADLQGTRAD-AWGPDRPSALVLGSEAHG 219
Cdd:TIGR00186 117 DGVILPKRRSAPLNSTVVKTSSGAVEYVPLARVTNLSRTITKLKESGFWTVGTDLDAQDTLyQVKLTKPLALVVGNEGEG 196
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 502826053 220 LSAAVLDRLDLTVSLPGAPDRPaaeSLNVAVAGGILLYEWL 260
Cdd:TIGR00186 197 VSRLIKENCDFLIKIPMAGKVD---SLNVSVAAGILLFEIK 234
|
|
| PRK10864 |
PRK10864 |
putative methyltransferase; Provisional |
73-259 |
1.01e-15 |
|
putative methyltransferase; Provisional
Pssm-ID: 236779 [Multi-domain] Cd Length: 346 Bit Score: 75.59 E-value: 1.01e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502826053 73 HETDPDTMTTLTDVETPQGVVAVAERRL-RDPETVPEQIGEAGTVLVLDGIQDPGNVGTLLRTAAWFGAQAVVAGPGTAG 151
Cdd:PRK10864 156 HVVDEAELTKASGTEHHGGVCFLIKKRNgTDVQQWLAQAGAQDCVLALEDVGNPHNLGGIMRSCAHFGVKGVVVQDAALL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502826053 152 LYGPKVMRAGAGSHWALPLaRTDAPGPFLDRLRRHGAALYG-ADLQGTR-ADAWGPDRpSALVLGSEAHGLSAAVLDRLD 229
Cdd:PRK10864 236 ESGAAIRTAEGGAEHVQPI-TGDSFVDVLDDFRQAGYTIVTtSSHKGTPlFKASLPAK-MVLVLGQEYDGLSDAARQQGD 313
|
170 180 190
....*....|....*....|....*....|
gi 502826053 230 LTVSLPGAPDrpaAESLNVAVAGGILLYEW 259
Cdd:PRK10864 314 LSVSIDGTGN---VESLNVSVATGVLLAEW 340
|
|
| SpoU_sub_bind |
smart00967 |
RNA 2'-O ribose methyltransferase substrate binding; This domain is a RNA 2'-O ribose ... |
45-97 |
5.28e-05 |
|
RNA 2'-O ribose methyltransferase substrate binding; This domain is a RNA 2'-O ribose methyltransferase substrate binding domain.
Pssm-ID: 214943 [Multi-domain] Cd Length: 70 Bit Score: 40.60 E-value: 5.28e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 502826053 45 PLVEVVVTPEGRGD-PTVQALLEQLSVSVHETDPDTMTTLTDVETPQGVVAVAE 97
Cdd:smart00967 16 RIKELYLTEGRAERlKELLKLAKERGIKVIEVSKKELDKLSGTANHQGVVAVVK 69
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| SpoU |
COG0566 |
tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA ... |
3-260 |
9.81e-70 |
|
tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA G18 (ribose-2'-O)-methylase SpoU is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 440332 [Multi-domain] Cd Length: 265 Bit Score: 215.45 E-value: 9.81e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502826053 3 TPLSNRRRKAIAALTRRRGRRRHDRTLVEGPRALRAALDADAPLVEVVVTPEGRGD-PTVQALLEQLSVSVHETDPDTMT 81
Cdd:COG0566 2 TSPSNPRVKDLRKLRDKKYREEEGLFLAEGRHAVEEALKAGREIEELLVTEGALDRlAELLALAKAAGIPVYEVSREVLD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502826053 82 TLTDVETPQGVVAVAER-RLRDPETVPEQIGEAGTVLVLDGIQDPGNVGTLLRTAAWFGAQAVVAGPGTAGLYGPKVMRA 160
Cdd:COG0566 82 KLSGTETHQGVLAVVRPpEYADLEDLLAEAGEPPLLLVLDGVQDPGNLGAILRSAAAFGVDGVILPKRRADPYNPKVVRA 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502826053 161 GAGSHWALPLARTDAPGPFLDRLRRHGAALYGADLQGTRA-DAWGPDRPSALVLGSEAHGLSAAVLDRLDLTVSLPGApd 239
Cdd:COG0566 162 SAGALFHVPVARVTNLADALEELKEAGFWVVGTDLDGEASlYEVDLPGPVALVLGNEGKGLSRLVLEACDELVRIPMA-- 239
|
250 260
....*....|....*....|.
gi 502826053 240 rPAAESLNVAVAGGILLYEWL 260
Cdd:COG0566 240 -GGVESLNVAVAAAILLYEAA 259
|
|
| SpoU-like_rRNA-MTase |
cd18095 |
SAM-dependent rRNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes ... |
116-259 |
4.99e-59 |
|
SAM-dependent rRNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349968 Cd Length: 143 Bit Score: 183.78 E-value: 4.99e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502826053 116 VLVLDGIQDPGNVGTLLRTAAWFGAQAVVAGPGTAGLYGPKVMRAGAGSHWALPLARTDAPGPFLDRLRRHGAALYGADL 195
Cdd:cd18095 2 VLVLDGVQDPGNLGTIIRTAAAFGVDGVILSKGTVDPYNPKVVRASMGALFRLPIIRVDDLEELLEELKEAGYKVVAADL 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 502826053 196 QGTRA-DAWGPDRPSALVLGSEAHGLSAAVLDRLDLTVSLPGAPDrpaAESLNVAVAGGILLYEW 259
Cdd:cd18095 82 DGGSSlYDLDLPKPVALVLGNEGNGLSDELLELCDKRVTIPMSGG---VESLNVAVAAAILLYEL 143
|
|
| SpoU-like_RNA-MTase |
cd18109 |
SAM-dependent RNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes ... |
116-259 |
3.32e-52 |
|
SAM-dependent RNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349982 Cd Length: 141 Bit Score: 166.56 E-value: 3.32e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502826053 116 VLVLDGIQDPGNVGTLLRTAAWFGAQAVVAGPGTAGLYGPKVMRAGAGSHWALPLARTDapgpFLDRLRRHGAAL--YGA 193
Cdd:cd18109 2 TLALDGIQDPGNLGTIIRTADWFGIRQIICSPDTVDPYNPKVVQASMGSIFRVQIHYTD----LPALLAELKKAFpvYGA 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 502826053 194 DLQGTRADAWGPDRPSALVLGSEAHGLSAAVLDRLDLTVSLPGAPDrpAAESLNVAVAGGILLYEW 259
Cdd:cd18109 78 DLDGENLYEFTLPEKGILVMGNEGHGISPEVLKLLTHRLTIPRYGK--GAESLNVAVATAILLSEF 141
|
|
| SpoU_methylase |
pfam00588 |
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet. |
116-257 |
8.82e-44 |
|
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet.
Pssm-ID: 425768 Cd Length: 142 Bit Score: 144.98 E-value: 8.82e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502826053 116 VLVLDGIQDPGNVGTLLRTAAWFGAQAVV-AGPGTAGLYGPKVMRAGAGSHWALPLARTDAPGPFLDRLRRHGAALYGAD 194
Cdd:pfam00588 3 VVVLDNIQDPGNLGAIIRTAAAFGADGLIlVEPRSADPYNPKAIRASAGALFHLPLVVVDNLEEALKDLKEAGYAVVATS 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 502826053 195 LQGTRADAWGPDRPSALVLGSEAHGLSAAVLDRLDLTVSLPGAPDrpaAESLNVAVAGGILLY 257
Cdd:pfam00588 83 LGGKSLYEIDFPKKVALVFGNEGTGLSNEVLELCDRLVRIPMSGD---VESLNVAVAAAIALY 142
|
|
| SpoU-like_RlmB |
cd18103 |
SAM-dependent rRNA methylase related to RlmB; 23S rRNA-M2G2251-MTase RlmB catalyzes the ... |
116-259 |
2.36e-35 |
|
SAM-dependent rRNA methylase related to RlmB; 23S rRNA-M2G2251-MTase RlmB catalyzes the methylation of guanosine 2251, a modification conserved in the peptidyltransferase domain of 23S rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349976 Cd Length: 143 Bit Score: 123.26 E-value: 2.36e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502826053 116 VLVLDGIQDPGNVGTLLRTAAWFGAQAVVAGP-GTAGLyGPKVMRAGAGSHWALPLARTDAPGPFLDRLRRHGAALYGAD 194
Cdd:cd18103 2 LLILDGITDPHNLGAIIRSAEAFGVDGVIIPKrRSAPL-TPTVAKASAGALEHLPIARVTNLARALEELKEAGFWIYGAD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 502826053 195 LQGTRA-DAWGPDRPSALVLGSEAHGLSAAVLDRLDLTVSLPGAPDRpaaESLNVAVAGGILLYEW 259
Cdd:cd18103 81 GEAEKSlYDVDLTGPLALVLGSEGKGLRRLVLKNCDFLVKIPMAGKV---DSLNVSVAAGIILYEI 143
|
|
| rRNA_methyl_3 |
TIGR00186 |
rRNA methylase, putative, group 3; this is part of the trmH (spoU) family of rRNA methylases ... |
64-260 |
4.38e-33 |
|
rRNA methylase, putative, group 3; this is part of the trmH (spoU) family of rRNA methylases [Protein synthesis, tRNA and rRNA base modification]
Pssm-ID: 129290 [Multi-domain] Cd Length: 237 Bit Score: 120.53 E-value: 4.38e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502826053 64 LLEQLSVSVHETDPDTMTTLTDVETPQGVVA-VAERRLRDPETVPEQI--GEAGTVLVLDGIQDPGNVGTLLRTAAWFGA 140
Cdd:TIGR00186 37 LAKKQGINIQLVDRQKLDQLTKGGNHQGIAAkVKPILYKDLNDLYKTAksKKQPFLLILDEITDPHNLGAILRTAEAFGV 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502826053 141 QAVVAGPGTAGLYGPKVMRAGAGSHWALPLARTDAPGPFLDRLRRHGAALYGADLQGTRAD-AWGPDRPSALVLGSEAHG 219
Cdd:TIGR00186 117 DGVILPKRRSAPLNSTVVKTSSGAVEYVPLARVTNLSRTITKLKESGFWTVGTDLDAQDTLyQVKLTKPLALVVGNEGEG 196
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 502826053 220 LSAAVLDRLDLTVSLPGAPDRPaaeSLNVAVAGGILLYEWL 260
Cdd:TIGR00186 197 VSRLIKENCDFLIKIPMAGKVD---SLNVSVAAGILLFEIK 234
|
|
| SpoU-like_family |
cd18082 |
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase ... |
116-259 |
4.74e-32 |
|
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349955 Cd Length: 145 Bit Score: 115.02 E-value: 4.74e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502826053 116 VLVLDGIQDPGNVGTLLRTAAWFGAQAVVAGPGTAGLYGPKVMRAGAGSHWALPLARTDAPGPFLDRLRRHGAALYGADL 195
Cdd:cd18082 1 HLVLDNIRSPGNIGSIFRTADAFGVEKIYLVGPTADIFDPKAKRTSRGTHFSVPYERVDNFEEYLKSLKEEGYPLIGLEL 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 502826053 196 QGTRAD----AWGPDRPSALVLGSEAHGLSAAVLDRLDLTVSLPGAPDrpaAESLNVAVAGGILLYEW 259
Cdd:cd18082 81 TDGSIPlsefKFKKPKKIALIFGNERSGLSPELLALCDYTVHIPMSGK---NSSLNVSVATGIALYEF 145
|
|
| SpoU-like_MRM1 |
cd18105 |
SAM-dependent rRNA methylase related to MRM1; MRM1 catalyzes the methylation of 2'-O-ribose ... |
116-258 |
3.10e-31 |
|
SAM-dependent rRNA methylase related to MRM1; MRM1 catalyzes the methylation of 2'-O-ribose residues G1145 to GmG residue of the mitochondrial 16S rRNA. MRM1 is a member of the SPOUT (SpoU-TrmD) methyltransferase (MTase) superfamily, a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349978 Cd Length: 158 Bit Score: 113.38 E-value: 3.10e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502826053 116 VLVLDGIQDPGNVGTLLRTAAWFGAQAVV-AGPGTAGLyGPKVMRAGAGSHWALPLARTDAPGPFLDRLRRHGAALYGAD 194
Cdd:cd18105 2 WLLLDEITDPQNLGAILRSAYFLGVDGVVvSSKNSAPL-SPVVSKASAGALELMPIYSVDNLASFLKSSKENGWKVVGTS 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 502826053 195 L--QGTRADAW---------GPDRPSALVLGSEAHGLSAAVLDRLDLTVSLPGAP--DRPAAESLNVAVAGGILLYE 258
Cdd:cd18105 81 AppSASSDKKTipanelselLLEKPTILVLGNEGRGLRTNIKNLCDYLVSIPGGRsaENPGVDSLNVSVAAGILLHS 157
|
|
| SpoU-like_RNMTL1 |
cd18106 |
SAM-dependent rRNA methylase related to RNMTL1; RNMTL1 (also known as HC90, MRM3 and RMTL1) ... |
117-258 |
2.93e-26 |
|
SAM-dependent rRNA methylase related to RNMTL1; RNMTL1 (also known as HC90, MRM3 and RMTL1) catalyzes the methylation of 2'-O-ribose residues G1370 to GmG residue of the mitochondrial 16S rRNA. RNMTL1 is a member of the SPOUT (SpoU-TrmD) methyltransferase (MTase) superfamily, a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349979 Cd Length: 148 Bit Score: 100.02 E-value: 2.93e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502826053 117 LVLDGIQDPGNVGTLLRTAAWFGAQAVVAGPGTAGLYGPKVMRAGAGSHWALPLaRTDAPGPFLDRLRRHGAALYGAD-- 194
Cdd:cd18106 3 VICDNIRDPGNLGSILRSAAAAGCSKVLLTKGCVDPWEPKVLRAGAGAHFRLPI-YGNLSWDDIPNYLPDDSKVFLADnn 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 502826053 195 LQGTRADA-WGPDRPSALVLGSEAHGLSaavLDRLDLTVSLPGA----PDRPAAESLNVAVAGGILLYE 258
Cdd:cd18106 82 LPVQPYDSiDYCSGPIVLVIGGETHGVS---PEAYKLAHSTGGSrvhiPLANGVDSLNSAVAASILLFE 147
|
|
| SpoU-like_RNA-MTase |
cd18104 |
SAM-dependent RNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes ... |
116-258 |
3.20e-26 |
|
SAM-dependent RNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349977 Cd Length: 146 Bit Score: 99.96 E-value: 3.20e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502826053 116 VLVLDGIQDPGNVGTLLRTAAWFGAQAVVAGPGTAGLYGPKVMRAGAGSHWALPLArTDAPGPFLDRLRRHGAALYGADL 195
Cdd:cd18104 2 ILVLEGLEKPGNLGAILRSADAAGADAVILCDPKTDLFNPNVIRASLGAVFTLPVA-EASSEETLAWLKENKIRILATTP 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 502826053 196 QG----TRADAWGpdrPSALVLGSEAHGLSAAVLDRLDLTVSLP--GAPDrpaaeSLNVAVAGGILLYE 258
Cdd:cd18104 81 KAeklyYEADLRG---PIAIVVGSESEGLSEFWLKAADERVRIPmaGQAD-----SLNVSVAAAILLYE 141
|
|
| SpoU-like_AviRb |
cd18107 |
SAM-dependent rRNA methylase related to AviRb; AviRb from Streptomyces viridochromogenes ... |
116-258 |
4.66e-23 |
|
SAM-dependent rRNA methylase related to AviRb; AviRb from Streptomyces viridochromogenes methylates the 2'-O atom of U2479 of the 23S ribosomal RNA. AviRb is a member of the SPOUT (SpoU-TrmD) methyltransferase (MTase) superfamily, a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349980 Cd Length: 148 Bit Score: 91.68 E-value: 4.66e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502826053 116 VLVLDGIQDPGNVGTLLRTAAWFGAQAVVAGPGTAGLYGPKVMRAGAGSHWALPLARTDAPG---PFLDRLRRHGAAL-- 190
Cdd:cd18107 2 VVLFDRPTSPGNLGTIIRSADALGAHGLVVTGHAADVYDPKTIRASTGSLFSLPIVRVPSNReleDWVEARKARGTPLql 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 502826053 191 YGADLQG-TRADAWGPDRPSALVLGSEAHGLSAAVLDRLDLTVSLPGapdRPAAESLNVAVAGGILLYE 258
Cdd:cd18107 82 VGTDEHGdHQIADHDFTRPTLLLIGNETAGLSAAWRELCDETVSIPM---AGSASSLNAACAASIFLYE 147
|
|
| SpoU-like_TrmH |
cd18092 |
SAM-dependent tRNA methylase related to TrmH; TrmH catalyzes the transfer of the methyl group ... |
94-258 |
1.30e-22 |
|
SAM-dependent tRNA methylase related to TrmH; TrmH catalyzes the transfer of the methyl group from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of the ribose of the universally conserved guanosine 18 (G18) position in tRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349965 Cd Length: 162 Bit Score: 90.99 E-value: 1.30e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502826053 94 AVAERRLRDpetvpeqigeagTVLVLDGIQDPGNVGTLLRTAAWFGAQAV-VAGPGTAGLYGPKVMRagaGSH-WaLPLA 171
Cdd:cd18092 8 EVLARRTRD------------LTVVLENVHDPHNASAVLRTCDAFGVQDVhVIEPKNKFKKNRGVAM---GADkW-LDVH 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502826053 172 RTDAPGPFLDRLRRHGAALYGADLQGT----RADAWgpDRPSALVLGSEAHGLSAAVLDRLDLTVSLP--GapdrpAAES 245
Cdd:cd18092 72 RHDSTEECLAALKEQGYRIVATSLSPDavplDELDY--TRPTALVFGNEKDGVSEEALAAADERVYIPmyG-----FVES 144
|
170
....*....|...
gi 502826053 246 LNVAVAGGILLYE 258
Cdd:cd18092 145 LNVSVAAAIILYE 157
|
|
| SpoU-like |
cd18097 |
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase ... |
116-259 |
1.41e-19 |
|
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349970 Cd Length: 144 Bit Score: 82.23 E-value: 1.41e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502826053 116 VLVLDGIQDPGNVGTLLRTAAWFGAQAVVAGPGTAGLYGPKVMRAGAGSHWALPLARTDAPGPFLDRLRRHGAALYGADl 195
Cdd:cd18097 2 VVVLDNLRSAHNVGSIFRTADAAGVEKIYLCGYTPTPPHPKVAKTALGAEESVPWEHFEDTLEAVRALKARGYTIIALE- 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 502826053 196 QGTRADAWG---PDRPSALVLGSEAHGLSAAVLDRLDLTVSLpgaPDRPAAESLNVAVAGGILLYEW 259
Cdd:cd18097 81 TTENSVPLHearLPRPLALVLGNEVRGVSPEVLALCDAVVEI---PMFGRKNSLNVAVAAAVALYEL 144
|
|
| SpoU-like |
cd18098 |
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase ... |
119-257 |
6.77e-17 |
|
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349971 Cd Length: 138 Bit Score: 74.99 E-value: 6.77e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502826053 119 LDGIQDPGNVGTLLRTAAWFGAQAVVAgpgTAGLYGPKVMRAGAGSHWA-LPLARTDAPGPFLDRLrRHGAALYGADLqG 197
Cdd:cd18098 5 IENPKTPKNVGTLWRAAGCLGASFVFT---IGARYKRRKQSTDTSKAWRhIPLFHYDDLEDLAEPL-PFGAVLVAVEL-T 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 502826053 198 TRADAWG----PDRpSALVLGSEAHGLSAAVLDRLDLTVSLPGapdrpaAESLNVAVAGGILLY 257
Cdd:cd18098 80 EGATPLPdfkhPDR-AVYLLGPEDGGLPQEVLARCHHVVYLPT------RGSLNVAVAGSIVLY 136
|
|
| PRK10864 |
PRK10864 |
putative methyltransferase; Provisional |
73-259 |
1.01e-15 |
|
putative methyltransferase; Provisional
Pssm-ID: 236779 [Multi-domain] Cd Length: 346 Bit Score: 75.59 E-value: 1.01e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502826053 73 HETDPDTMTTLTDVETPQGVVAVAERRL-RDPETVPEQIGEAGTVLVLDGIQDPGNVGTLLRTAAWFGAQAVVAGPGTAG 151
Cdd:PRK10864 156 HVVDEAELTKASGTEHHGGVCFLIKKRNgTDVQQWLAQAGAQDCVLALEDVGNPHNLGGIMRSCAHFGVKGVVVQDAALL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502826053 152 LYGPKVMRAGAGSHWALPLaRTDAPGPFLDRLRRHGAALYG-ADLQGTR-ADAWGPDRpSALVLGSEAHGLSAAVLDRLD 229
Cdd:PRK10864 236 ESGAAIRTAEGGAEHVQPI-TGDSFVDVLDDFRQAGYTIVTtSSHKGTPlFKASLPAK-MVLVLGQEYDGLSDAARQQGD 313
|
170 180 190
....*....|....*....|....*....|
gi 502826053 230 LTVSLPGAPDrpaAESLNVAVAGGILLYEW 259
Cdd:PRK10864 314 LSVSIDGTGN---VESLNVSVATGVLLAEW 340
|
|
| SpoU-like_TRM3-like |
cd18091 |
SAM-dependent tRNA methylase related to TRM3; Yeast tRNA (guanosine(18)-2'-O) ... |
122-259 |
6.70e-15 |
|
SAM-dependent tRNA methylase related to TRM3; Yeast tRNA (guanosine(18)-2'-O)-methyltransferase TRM3 catalyzes the formation of 2'-O-methylguanosine at position 18 (Gm18) in various tRNAs. TRM3 is similar to C-terminal domain of TAR (HIV-1) RNA binding protein 1 (TARBP1), a protein binding to TAR, which functions as a RNA regulatory signal by forming a stable stem-loop structure to which transactivator protein Tat binds. The role of TARBP1 is believed to be to disengage RNA polymerase II from TAR during transcriptional elongation. TRM3 and the C-terminal methyltransferase domain of TARBP1 are members of the SPOUT methyltransferase superfamily.
Pssm-ID: 349964 Cd Length: 145 Bit Score: 69.87 E-value: 6.70e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502826053 122 IQDPGNVGTLLRTAAWFGAQAVVAgPGTAGLYGPKVMRAGAGSHWALPL--ARTDAPGPFLDRLRRHGAALYGADlQGTR 199
Cdd:cd18091 8 IDKPPNLGGLCRTCEIFGVSKLVL-PNLAVVEDKQFKALSVSAEKWLPIeeVKPEDLLPYLKEKKQEGYTIVGLE-QTAN 85
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 502826053 200 A---DAWGPDRPSALVLGSEAHGLSAAVLDRLDLTVSLP--GAPdrpaaESLNVAVAGGILLYEW 259
Cdd:cd18091 86 SvslHDFQFPKKTVLVLGNEKEGIPAELLSLLDVCVEIPqlGVI-----RSLNVHVSGAIAIYEY 145
|
|
| PRK11181 |
PRK11181 |
23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB; |
46-258 |
5.97e-13 |
|
23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB;
Pssm-ID: 183021 [Multi-domain] Cd Length: 244 Bit Score: 66.53 E-value: 5.97e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502826053 46 LVEVVVTpEGRGDPTVQALLEQLS---VSVHETDPDTMTTLTDVETPQGVVA-VAERRLRDPETVPEQIGEAGT--VLVL 119
Cdd:PRK11181 22 FIEVFVL-KGREDKRLLPLINELEaqgIVIQLANRQTLDEKAEGAVHQGIIArVKPGRQLQENDLPDLLASLEQpfLLIL 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502826053 120 DGIQDPGNVGTLLRTAAWFGAQAV-VAGPGTAGLyGPKVMRAGAGSHWALP------LARTdapgpfLDRLRRH-----G 187
Cdd:PRK11181 101 DGVTDPHNLGACLRSADAAGVHAViVPKDRSAQL-NATAKKVACGAAETVPlirvtnLART------MRMLQEKniwivG 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 502826053 188 AA------LYGADLQGtradawgpdrPSALVLGSEAHGLSAAVLDRLDLTVSLPGApdrPAAESLNVAVAGGILLYE 258
Cdd:PRK11181 174 TAgeadhtLYQSKLTG----------PLALVMGAEGEGMRRLTREHCDELISIPMA---GSVSSLNVSVATGICLFE 237
|
|
| SpoU-like_NHR |
cd18108 |
Nosiheptide-resistance methyltransferase (NHR); Nosiheptide-resistance methyltransferase (NHR) ... |
116-258 |
1.76e-12 |
|
Nosiheptide-resistance methyltransferase (NHR); Nosiheptide-resistance methyltransferase (NHR) confers resistance to the thiazole antibiotic nosiheptide via catalyzing 2'O-methylation of 23S rRNA at the nucleotide A1067. NHR is a member of the SPOUT (SpoU-TrmD) methyltransferase (MTase) superfamily, a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349981 Cd Length: 144 Bit Score: 63.27 E-value: 1.76e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502826053 116 VLVLDGIQDPGNVGTLLRTAAWFGAQAVV-AGPGTAGLYGPKVMRAGAGSHWALPLARTDAPgPFLDRLRRHGAALYGAD 194
Cdd:cd18108 2 VVVLDGVRIVGNIGAIVRTSLALGAAGIVlVDSDLATVADRRLLRASRGYVFSLPVVLADRE-EAVAFLRDNDIPLMTLD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 502826053 195 LQGTRADAWGPDRPS--ALVLGSEAHGLSAAVLDRLDLTVSLPGAPDrpaAESLNVAVAGGILLYE 258
Cdd:cd18108 81 ADGDVPVKELGDRPDrlALVFGSEKGGPSGLFEEAAAGTVSIPMSSS---TESLNVSVSAGIALHE 143
|
|
| SpoU-like |
cd18096 |
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase ... |
115-259 |
4.64e-12 |
|
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349969 Cd Length: 140 Bit Score: 61.85 E-value: 4.64e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502826053 115 TVLVLDGIQDPGNVGTLLRTAAWFGAQAVVagpgtagLYG-PKVMRAGA-GSHWALPLARTDAPGPFLDRLRRHGAALYG 192
Cdd:cd18096 1 LYLVLHNVAKRHNIGTIVRSANAFGVKEVH-------LVGrRKFNPFGAmGTDRHVKFRHFDTLAEAKEYLKERGIRLVG 73
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 502826053 193 ADL----QGTRADAWgpDRPSALVLGSEAHGLSAAVLDRLDLTVSLP--GapdrPAAESLNVAVAGGILLYEW 259
Cdd:cd18096 74 VEIvpgaEPIETHPF--PGDTAFVLGNEGTGLSDEQLAICDGFVYIPqyG----SGTASLNVSVAASIVLHHF 140
|
|
| SpoU-like_TrmL |
cd18094 |
SAM-dependent tRNA methylase related to TrmL; tRNA (Um34/Cm34) methyltransferase TrmL ... |
125-260 |
1.61e-07 |
|
SAM-dependent tRNA methylase related to TrmL; tRNA (Um34/Cm34) methyltransferase TrmL catalyzes the methyl transfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH at position 34 in both tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349967 Cd Length: 145 Bit Score: 49.37 E-value: 1.61e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502826053 125 PGNVGTLLRTAAWFGAQAVVAGPgtaglYG-----PKVMRAGAGsHWalplartdapgPFLDrLRRHG------AALYGA 193
Cdd:cd18094 10 PQNTGNIARTCAATGARLHLIEP-----LGfslddKRLKRAGLD-YW-----------DHVD-LTVHDsweaflEALPPG 71
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 502826053 194 DLQG--TRADAWGPD----RPSALVLGSEAHGLSAAVLDR-LDLTVSLPGapdRPAAESLNVAVAGGILLYEWL 260
Cdd:cd18094 72 RLFLftTKGTKPYTDfdfkPGDYLVFGRESTGLPEEILDAfPDRRLRIPM---RPKVRSLNLSNSVAIVLYEAL 142
|
|
| TrmJ |
COG0565 |
tRNA C32,U32 (ribose-2'-O)-methylase TrmJ or a related methyltransferase [Translation, ... |
199-259 |
6.19e-07 |
|
tRNA C32,U32 (ribose-2'-O)-methylase TrmJ or a related methyltransferase [Translation, ribosomal structure and biogenesis]; tRNA C32,U32 (ribose-2'-O)-methylase TrmJ or a related methyltransferase is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 440331 [Multi-domain] Cd Length: 237 Bit Score: 48.96 E-value: 6.19e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 502826053 199 RADAWGPDRPSALVLGSEAHGLSAAVLDRLDLTVSLPGAPDRPaaeSLNVAVAGGILLYEW 259
Cdd:COG0565 98 ELLARAAGGKVALVFGRERSGLTNEELALCDALVTIPTNPEYP---SLNLAQAVQVVAYEL 155
|
|
| SpoU-like_TrmJ |
cd18093 |
SAM-dependent tRNA methylase related to TrmJ; tRNA methyltransferase TrmJ catalyzes the methyl ... |
202-259 |
7.63e-07 |
|
SAM-dependent tRNA methylase related to TrmJ; tRNA methyltransferase TrmJ catalyzes the methyl transfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH at position 32 in both tRNASer1 and tRNAGln2. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349966 Cd Length: 153 Bit Score: 47.49 E-value: 7.63e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 502826053 202 AWGPDRPSALVLGSEAHGLSAAVLDRLDLTVSLPGAPDRPaaeSLNVAVAGGILLYEW 259
Cdd:cd18093 99 EHAAGGKVALVFGREDSGLTNEELALCDLLVTIPTNPEYP---SLNLAQAVAIVLYEL 153
|
|
| TrmL |
COG0219 |
tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain [Translation, ... |
125-260 |
2.91e-05 |
|
tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain [Translation, ribosomal structure and biogenesis]; tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 439989 Cd Length: 153 Bit Score: 43.10 E-value: 2.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502826053 125 PGNVGTLLRTAAWFGAQAVvagpgtagLYGP--------KVMRAGAGSHWALPLARTDAPGPFLDRLRrhGAALYGADLQ 196
Cdd:COG0219 12 PQNTGNIIRLCAATGARLH--------LIEPlgfslddkKLKRAGLDYWELVDLTVHDSWEAFLEALP--GGRLFLFTTK 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 502826053 197 GTR--ADA-WGPDrpSALVLGSEAHGLSAAVLDRL-DLTVSLPGapdRPAAESLNVAVAGGILLYEWL 260
Cdd:COG0219 82 GTKpyTDVdYQPG--DVLLFGRETAGLPEEVLAAPaDQRLRIPM---RPGVRSLNLSNAVAIVLYEAL 144
|
|
| SpoU_sub_bind |
smart00967 |
RNA 2'-O ribose methyltransferase substrate binding; This domain is a RNA 2'-O ribose ... |
45-97 |
5.28e-05 |
|
RNA 2'-O ribose methyltransferase substrate binding; This domain is a RNA 2'-O ribose methyltransferase substrate binding domain.
Pssm-ID: 214943 [Multi-domain] Cd Length: 70 Bit Score: 40.60 E-value: 5.28e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 502826053 45 PLVEVVVTPEGRGD-PTVQALLEQLSVSVHETDPDTMTTLTDVETPQGVVAVAE 97
Cdd:smart00967 16 RIKELYLTEGRAERlKELLKLAKERGIKVIEVSKKELDKLSGTANHQGVVAVVK 69
|
|
| SpoU_sub_bind |
pfam08032 |
RNA 2'-O ribose methyltransferase substrate binding; This domain is a RNA 2'-O ribose ... |
45-97 |
2.36e-04 |
|
RNA 2'-O ribose methyltransferase substrate binding; This domain is a RNA 2'-O ribose methyltransferase substrate binding domain.
Pssm-ID: 429793 [Multi-domain] Cd Length: 74 Bit Score: 38.76 E-value: 2.36e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 502826053 45 PLVEVVVTpEGRGDPTVQALLEQLS---VSVHETDPDTMTTLTDVETPQGVVAVAE 97
Cdd:pfam08032 17 EIKKLYLT-EGRRDPRLKELLKLAKergIKVEEVDRKKLDKLSGTANHQGVVAEVK 71
|
|
| PRK11081 |
PRK11081 |
tRNA guanosine-2'-O-methyltransferase; Provisional |
207-258 |
8.08e-04 |
|
tRNA guanosine-2'-O-methyltransferase; Provisional
Pssm-ID: 236837 [Multi-domain] Cd Length: 229 Bit Score: 39.59 E-value: 8.08e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 502826053 207 RPSALVLGSEAHGLSAAVLDRLDLTVSLP--GApdrpaAESLNVAVAGGILLYE 258
Cdd:PRK11081 112 RPTCILMGQEKTGISQEALALADQDIIIPmiGM-----VQSLNVSVASALILYE 160
|
|
| |
