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Conserved domains on  [gi|502850102|ref|WP_013085078|]
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MULTISPECIES: YrhC family protein [Priestia]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YrhC super family cl16652
YrhC-like protein; The YrhC-like protein family includes the B. subtilis YrhC protein, which ...
 4-60 2.79e-11

YrhC-like protein; The YrhC-like protein family includes the B. subtilis YrhC protein, which is functionally uncharacterized. YrhC is on the same operon as the MccA and MccB genes, which are involved in the conversion of methionine to cysteine. Expression of this operon is repressed in the presence of sulphate or cysteine. This family of proteins is found in bacteria. Proteins in this family are approximately 80 amino acids in length.


The actual alignment was detected with superfamily member pfam14143:

Pssm-ID: 372926  Cd Length: 72  Bit Score: 53.38  E-value: 2.79e-11
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 502850102   4 QRIKAKIEDYSRFIYVLLAVSTFLYIGVMIGQGEKSDMQLGIMEAIVILFAALAFYF 60
Cdd:pfam14143  1 KELKGKVEDYKRFAFVLLALSAFLYIGTVIPIEAKETAKKPIMLGAIVVFLTGAFLF 57
 
Name Accession Description Interval E-value
YrhC pfam14143
YrhC-like protein; The YrhC-like protein family includes the B. subtilis YrhC protein, which ...
 4-60 2.79e-11

YrhC-like protein; The YrhC-like protein family includes the B. subtilis YrhC protein, which is functionally uncharacterized. YrhC is on the same operon as the MccA and MccB genes, which are involved in the conversion of methionine to cysteine. Expression of this operon is repressed in the presence of sulphate or cysteine. This family of proteins is found in bacteria. Proteins in this family are approximately 80 amino acids in length.


Pssm-ID: 372926  Cd Length: 72  Bit Score: 53.38  E-value: 2.79e-11
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 502850102   4 QRIKAKIEDYSRFIYVLLAVSTFLYIGVMIGQGEKSDMQLGIMEAIVILFAALAFYF 60
Cdd:pfam14143  1 KELKGKVEDYKRFAFVLLALSAFLYIGTVIPIEAKETAKKPIMLGAIVVFLTGAFLF 57
 
Name Accession Description Interval E-value
YrhC pfam14143
YrhC-like protein; The YrhC-like protein family includes the B. subtilis YrhC protein, which ...
 4-60 2.79e-11

YrhC-like protein; The YrhC-like protein family includes the B. subtilis YrhC protein, which is functionally uncharacterized. YrhC is on the same operon as the MccA and MccB genes, which are involved in the conversion of methionine to cysteine. Expression of this operon is repressed in the presence of sulphate or cysteine. This family of proteins is found in bacteria. Proteins in this family are approximately 80 amino acids in length.


Pssm-ID: 372926  Cd Length: 72  Bit Score: 53.38  E-value: 2.79e-11
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 502850102   4 QRIKAKIEDYSRFIYVLLAVSTFLYIGVMIGQGEKSDMQLGIMEAIVILFAALAFYF 60
Cdd:pfam14143  1 KELKGKVEDYKRFAFVLLALSAFLYIGTVIPIEAKETAKKPIMLGAIVVFLTGAFLF 57
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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