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Conserved domains on  [gi|502862160|ref|WP_013097136|]
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MULTISPECIES: flagellar hook protein FlgE [Enterobacter]

Protein Classification

flagellar hook protein FlgE( domain architecture ID 11448325)

flagellar hook protein FlgE functions as a nano-sized universal joint, which is essential for dynamic and efficient bacterial motility and taxis

CATH:  2.60.98.20
Gene Ontology:  GO:0071973
SCOP:  4003129

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FlgE COG1749
Flagellar hook protein FlgE [Cell motility];
1-402 3.31e-173

Flagellar hook protein FlgE [Cell motility];


:

Pssm-ID: 441355 [Multi-domain]  Cd Length: 414  Bit Score: 489.68  E-value: 3.31e-173
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160   1 MAFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGSASFADMFAGS-------KVGLGVKVAGITQDFTDGTTTNTGRGL 73
Cdd:COG1749    3 MSFNTGVSGLNAASTALDVIGNNIANSNTVGFKSSRAEFADLVAQSlsganptQVGGGVRVASVAQIFTQGSLQSTGNAL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160  74 DVAISQNGFFRMVDANGSVFYSRNGQFKLDENRNLVNMQGMQLTGYPVAGTPSTVQTGANPQPINIPTTLMAAKATTTAS 153
Cdd:COG1749   83 DLAISGNGFFVVSDSGGQTYYTRAGSFSLDKDGYLVNSSGLYLQGYPADADGTIPDTGGGLEPIQIPTGQLPAKATTKVT 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160 154 QQINLNSTDTAPTTAFDPANPDTYNKKGTVTVFDSQGNAHNMNLFYVKDATpaNSWKVYAQ-DGSVA--GSTASLATTLT 230
Cdd:COG1749  163 LGGNLPADATVPTAPFDPTDPTTYNFSTSVTVYDSLGNSHTLTLYFTKTGA--NTWTVYVTvDGADVtgGTGATGTGTLT 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160 231 FNNNGTLIGGGNINLTTATIP--GATPATFAMSFANSMQQNtGANNIVGTSQNGFKPGDLVSYQINDDGTVVGNYSNEQT 308
Cdd:COG1749  241 FDSNGKLTSPTSGGPGTLTLTvnGAAPQTITLDLSGLTQYA-SSFSVTSLTQDGYAAGTLTGVSIDDDGVVTATYSNGQT 319

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160 309 QVLGQIVLANFANNEGLKSEGDNVWSATQSSGVALLGTAGSGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTI 388
Cdd:COG1749  320 RPLGQIALATFANPQGLQKLGGNLWAETANSGEPLLGTAGTGGLGSIQSGALESSNVDLAEELVNMIVAQRAYQANAKVI 399

                        410
                 ....*....|....
gi 502862160 389 KTQDQILNTLVNLR 402
Cdd:COG1749  400 TTSDEMLQTLVNLK 413
 
Name Accession Description Interval E-value
FlgE COG1749
Flagellar hook protein FlgE [Cell motility];
1-402 3.31e-173

Flagellar hook protein FlgE [Cell motility];


Pssm-ID: 441355 [Multi-domain]  Cd Length: 414  Bit Score: 489.68  E-value: 3.31e-173
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160   1 MAFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGSASFADMFAGS-------KVGLGVKVAGITQDFTDGTTTNTGRGL 73
Cdd:COG1749    3 MSFNTGVSGLNAASTALDVIGNNIANSNTVGFKSSRAEFADLVAQSlsganptQVGGGVRVASVAQIFTQGSLQSTGNAL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160  74 DVAISQNGFFRMVDANGSVFYSRNGQFKLDENRNLVNMQGMQLTGYPVAGTPSTVQTGANPQPINIPTTLMAAKATTTAS 153
Cdd:COG1749   83 DLAISGNGFFVVSDSGGQTYYTRAGSFSLDKDGYLVNSSGLYLQGYPADADGTIPDTGGGLEPIQIPTGQLPAKATTKVT 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160 154 QQINLNSTDTAPTTAFDPANPDTYNKKGTVTVFDSQGNAHNMNLFYVKDATpaNSWKVYAQ-DGSVA--GSTASLATTLT 230
Cdd:COG1749  163 LGGNLPADATVPTAPFDPTDPTTYNFSTSVTVYDSLGNSHTLTLYFTKTGA--NTWTVYVTvDGADVtgGTGATGTGTLT 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160 231 FNNNGTLIGGGNINLTTATIP--GATPATFAMSFANSMQQNtGANNIVGTSQNGFKPGDLVSYQINDDGTVVGNYSNEQT 308
Cdd:COG1749  241 FDSNGKLTSPTSGGPGTLTLTvnGAAPQTITLDLSGLTQYA-SSFSVTSLTQDGYAAGTLTGVSIDDDGVVTATYSNGQT 319

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160 309 QVLGQIVLANFANNEGLKSEGDNVWSATQSSGVALLGTAGSGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTI 388
Cdd:COG1749  320 RPLGQIALATFANPQGLQKLGGNLWAETANSGEPLLGTAGTGGLGSIQSGALESSNVDLAEELVNMIVAQRAYQANAKVI 399

                        410
                 ....*....|....
gi 502862160 389 KTQDQILNTLVNLR 402
Cdd:COG1749  400 TTSDEMLQTLVNLK 413
flgE PRK05682
flagellar hook protein FlgE; Validated
 1-402 3.10e-167

flagellar hook protein FlgE; Validated


Pssm-ID: 235557 [Multi-domain]  Cd Length: 407  Bit Score: 474.32  E-value: 3.10e-167
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160   1 MAFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGSASFADMFAGS------KVGLGVKVAGITQDFTDGTTTNTGRGLD 74
Cdd:PRK05682   1 MSFNTAVSGLNAASNRLDVIGNNIANANTTGFKSSRAEFADLYANSagtnptQVGSGVKVAGVAQQFSQGSITSTGNSLD 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160  75 VAISQNGFFRMvDANGSVFYSRNGQFKLDENRNLVNMQGMQLTGYPV---AGTPSTVqtGANPQPINIPTTLMAAKATTT 151
Cdd:PRK05682  81 LAISGNGFFVV-SNGGNGFYTRAGAFKLDKNGYLVNAAGYYLQGYPAdadGGTPPTV--GAGLVPLNIPTTALAPKATTS 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160 152 ASQQINLNSTDTAPttafdPANPDTYNKKGTVTVFDSQGNAHNMNLFYVKdaTPANSWKVYAQDGSVAGSTASLA---TT 228
Cdd:PRK05682 158 GTFQGNLPSTAAFD-----PTDPDTYNHSTSLTVYDSLGNSHTLDVYFVK--TGDNTWEVYVYDDGKPVSTTATGtgtTT 230

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160 229 LTFNNNGTLIGGGNINLTTATIP----GATPATFAMSFANSMQQNTGaNNIVGTSQNGFKPGDLVSYQINDDGTVVGNYS 304
Cdd:PRK05682 231 LTFDSNGALTTTTSPTTFNITGGatngADGGQTITLDLSGSTQYASG-FTVSATTQDGYAPGTLTGYSIDDDGTVTAVYS 309

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160 305 NEQTQVLGQIVLANFANNEGLKSEGDNVWSATQSSGVALLGTAGSGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSN 384
Cdd:PRK05682 310 NGQTKPLGQIALANFANPDGLTKVGGNVWSATAASGVALIGTAGSGGFGTIQSGALESSNVDLSTELVNMIVAQRNYQAN 389

                        410
                 ....*....|....*...
gi 502862160 385 AQTIKTQDQILNTLVNLR 402
Cdd:PRK05682 390 AKTIKTQDQLLQTLVNLR 407
FlgEFG_subfam TIGR03506
flagellar hook-basal body protein; This model encompasses three closely related flagellar ...
 1-384 3.75e-55

flagellar hook-basal body protein; This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR02488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.


Pssm-ID: 274616 [Multi-domain]  Cd Length: 231  Bit Score: 181.68  E-value: 3.75e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160    1 MAFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGSASFADMFAGS-----KVGLGVKVAGITQDFTDGTTTNTGRGLDV 75
Cdd:TIGR03506   1 MALYTALSGLNAQSSALDVIANNIANANTTGFKRSRAEFQDLLSQSvsgsgQVGGGVRTSGVATDFSQGSLQSTGNSLDL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160   76 AISQNGFFRMVDANGSVFYSRNGQFKLDENRNLVNMQGMQLtgypvagtpstvqTGANPQPINIPTtlmaakatttasqq 155
Cdd:TIGR03506  81 AISGDGFFVVQTPDGSEAYTRAGSFKLDADGYLVTSDGYPL-------------LDWGGGPITLPP-------------- 133

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160  156 inlnstdtapttafdpanpdtynkkgtvtvfdsqgnahnmnlfyvkdatpanswkvyaqdgsvagstaslattltfnnng 235
Cdd:TIGR03506     --------------------------------------------------------------------------------

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160  236 tliGGGNInlttatipgatpatfamsfansmqqntgannivgtsqngfkpgdlvsyQINDDGTVVGNYSNEQTQVLGQIV 315
Cdd:TIGR03506 134 ---DAGSV------------------------------------------------SIGEDGTVSATYSNGQTVELGQIA 162

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 502862160  316 LANFANNEGLKSEGDNVWSATQSSGVALLGTAGSGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSN 384
Cdd:TIGR03506 163 LANFPNPDGLRKEGGNLYSATPGSGAALVGAPGTGGFGTLVSGALEGSNVDLAEELVNMISAQRAYQAN 231
Flg_bbr_C pfam06429
Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of ...
 323-401 5.10e-16

Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.


Pssm-ID: 428939 [Multi-domain]  Cd Length: 74  Bit Score: 72.30  E-value: 5.10e-16
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 502862160  323 EGLKSEGDNVWSATQSSGVALLGTAGsgnfgTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 401
Cdd:pfam06429   1 AGLEKGGDNLFRETDGAPILGAGADG-----RVQQGYLEGSNVNPVEEMVNMIEAQRAYEANSKVIQTADEMLQTANQL 74
 
Name Accession Description Interval E-value
FlgE COG1749
Flagellar hook protein FlgE [Cell motility];
1-402 3.31e-173

Flagellar hook protein FlgE [Cell motility];


Pssm-ID: 441355 [Multi-domain]  Cd Length: 414  Bit Score: 489.68  E-value: 3.31e-173
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160   1 MAFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGSASFADMFAGS-------KVGLGVKVAGITQDFTDGTTTNTGRGL 73
Cdd:COG1749    3 MSFNTGVSGLNAASTALDVIGNNIANSNTVGFKSSRAEFADLVAQSlsganptQVGGGVRVASVAQIFTQGSLQSTGNAL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160  74 DVAISQNGFFRMVDANGSVFYSRNGQFKLDENRNLVNMQGMQLTGYPVAGTPSTVQTGANPQPINIPTTLMAAKATTTAS 153
Cdd:COG1749   83 DLAISGNGFFVVSDSGGQTYYTRAGSFSLDKDGYLVNSSGLYLQGYPADADGTIPDTGGGLEPIQIPTGQLPAKATTKVT 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160 154 QQINLNSTDTAPTTAFDPANPDTYNKKGTVTVFDSQGNAHNMNLFYVKDATpaNSWKVYAQ-DGSVA--GSTASLATTLT 230
Cdd:COG1749  163 LGGNLPADATVPTAPFDPTDPTTYNFSTSVTVYDSLGNSHTLTLYFTKTGA--NTWTVYVTvDGADVtgGTGATGTGTLT 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160 231 FNNNGTLIGGGNINLTTATIP--GATPATFAMSFANSMQQNtGANNIVGTSQNGFKPGDLVSYQINDDGTVVGNYSNEQT 308
Cdd:COG1749  241 FDSNGKLTSPTSGGPGTLTLTvnGAAPQTITLDLSGLTQYA-SSFSVTSLTQDGYAAGTLTGVSIDDDGVVTATYSNGQT 319

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160 309 QVLGQIVLANFANNEGLKSEGDNVWSATQSSGVALLGTAGSGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTI 388
Cdd:COG1749  320 RPLGQIALATFANPQGLQKLGGNLWAETANSGEPLLGTAGTGGLGSIQSGALESSNVDLAEELVNMIVAQRAYQANAKVI 399

                        410
                 ....*....|....
gi 502862160 389 KTQDQILNTLVNLR 402
Cdd:COG1749  400 TTSDEMLQTLVNLK 413
flgE PRK05682
flagellar hook protein FlgE; Validated
 1-402 3.10e-167

flagellar hook protein FlgE; Validated


Pssm-ID: 235557 [Multi-domain]  Cd Length: 407  Bit Score: 474.32  E-value: 3.10e-167
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160   1 MAFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGSASFADMFAGS------KVGLGVKVAGITQDFTDGTTTNTGRGLD 74
Cdd:PRK05682   1 MSFNTAVSGLNAASNRLDVIGNNIANANTTGFKSSRAEFADLYANSagtnptQVGSGVKVAGVAQQFSQGSITSTGNSLD 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160  75 VAISQNGFFRMvDANGSVFYSRNGQFKLDENRNLVNMQGMQLTGYPV---AGTPSTVqtGANPQPINIPTTLMAAKATTT 151
Cdd:PRK05682  81 LAISGNGFFVV-SNGGNGFYTRAGAFKLDKNGYLVNAAGYYLQGYPAdadGGTPPTV--GAGLVPLNIPTTALAPKATTS 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160 152 ASQQINLNSTDTAPttafdPANPDTYNKKGTVTVFDSQGNAHNMNLFYVKdaTPANSWKVYAQDGSVAGSTASLA---TT 228
Cdd:PRK05682 158 GTFQGNLPSTAAFD-----PTDPDTYNHSTSLTVYDSLGNSHTLDVYFVK--TGDNTWEVYVYDDGKPVSTTATGtgtTT 230

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160 229 LTFNNNGTLIGGGNINLTTATIP----GATPATFAMSFANSMQQNTGaNNIVGTSQNGFKPGDLVSYQINDDGTVVGNYS 304
Cdd:PRK05682 231 LTFDSNGALTTTTSPTTFNITGGatngADGGQTITLDLSGSTQYASG-FTVSATTQDGYAPGTLTGYSIDDDGTVTAVYS 309

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160 305 NEQTQVLGQIVLANFANNEGLKSEGDNVWSATQSSGVALLGTAGSGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSN 384
Cdd:PRK05682 310 NGQTKPLGQIALANFANPDGLTKVGGNVWSATAASGVALIGTAGSGGFGTIQSGALESSNVDLSTELVNMIVAQRNYQAN 389

                        410
                 ....*....|....*...
gi 502862160 385 AQTIKTQDQILNTLVNLR 402
Cdd:PRK05682 390 AKTIKTQDQLLQTLVNLR 407
flgE PRK06803
flagellar basal body protein FlaE;
1-400 1.53e-101

flagellar basal body protein FlaE;


Pssm-ID: 235862 [Multi-domain]  Cd Length: 402  Bit Score: 307.08  E-value: 1.53e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160   1 MAFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGSASFADMFAGSKVGlGVKVAGITQDFT-DGTTTNTGRGLDVAISQ 79
Cdd:PRK06803   1 MSFNIALSGLNATTQQLNTISNNIANSSTKGFKGSRTEFSSIYNGGQPG-GVEVSSVSQNFSkDGSLTYTGRGLDLAISG 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160  80 NGFFRMVDANGSVFYSRNGQFKLDENRNLVNMQGMQLTGYPVAGTpSTVQTGaNPQPINIPTTLMAAKATTTASQQINLN 159
Cdd:PRK06803  80 GGFFVLKESDGDTAYTRAGMFRSDVDGYLTDPQGMKLQGYPVDAA-GNLQTG-NVSDLQVQTASLPAKATDQLDFVANLD 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160 160 STDTA---PTTAFDPANPDTYNKKGTVTVFDSQGNAHNMNLFYVKdaTPANSWKV-YAQDGSVAgsTASLATTLTFNNNG 235
Cdd:PRK06803 158 ASVTPidpSVSPFDPTDEKSYNSSTTSTVYDSLGNEHAVTQYFVK--TATNEWAVhYTVDGGDV--TPPLGHTLQFDDTG 233

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160 236 TLIGGGN--INLTTATIP-GATPATFAMSFANSMQQNTGANNiVGTSQNGFKPGDLVSYQINDDGTVVGNYSNEQTQVLG 312
Cdd:PRK06803 234 ALIPGKGstINLHGTFNPaGASDYDIDIDYTGSTQYAADFNN-SRNKSNGYTSGELNGVRIEDNGMVYATYTNGQRQLQG 312

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160 313 QIVLANFANNEGLKSEGDNVWSATQSSGVALLGTAGSGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQD 392
Cdd:PRK06803 313 QVVLANFANPNGLVTVSNTAWSASNKSGAPILGTPGTGTLGSLTSGALEGSNVDITAELVGLMTAQRNYQANAKVISTND 392


                 ....*...
gi 502862160 393 QILNTLVN 400
Cdd:PRK06803 393 TMQQALFN 400
flgE PRK12637
flagellar hook protein FlgE; Provisional
 1-402 1.52e-80

flagellar hook protein FlgE; Provisional


Pssm-ID: 183641 [Multi-domain]  Cd Length: 473  Bit Score: 255.45  E-value: 1.52e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160   1 MAFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGSASFADMFAGSKVGLGVKVAGITQDFTDGTTTNTGRGLDVAISQ- 79
Cdd:PRK12637   1 MGFGQGLSGLNAASQNLDVIGNNIANSGTVGFKSGAASFADVYASSRVGLGVKVSAINQRFTVGNISTTGGEYDMAIDGg 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160  80 NGFFRMVDANGSVFYSRNGQFKLDENRNLVNMQGMQLTGYPVAGTpstvqtGANPQPINIPTTLMAAKATTTASQQINLN 159
Cdd:PRK12637  81 KGFFRLTDQSGGVFYSRNGEFMVDKNFYIVNAQGFRLTGYPAGGV------GAQPVDLQLPQGNIAPQATSTAGLQTNLN 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160 160 S--------------------------TDTAPTTA--------------------------------------------F 169
Cdd:PRK12637 155 AnakvidpndtpavdgtveldgttyrfTNAGGTFAwvapapldgtynggdiviaggavtgdlasqpgyqpykplvagipF 234

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160 170 DPANPDTYNKKGTVTVFDSQGNAHNMNLFYVKD---ATPANSWKVYAQDGSVAGSTASLATTLTFNNNGTLIGGGNINLT 246
Cdd:PRK12637 235 DPTNPLSYTDQVPTTVYDSLGNSHQMIQYFAKRpavGTESVYEVYYVLDGQPMQVNGGASQTLNFDTAGNLLNQPPTAQV 314

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160 247 TATIPGATPAT---FAMSFANSMQQNTGANNIVGTSQNGFKPGDLVSYQINDDGTVVGNYSNEQTQVLGQIVLANFANNE 323
Cdd:PRK12637 315 TFANPGGNAAPadpLAITVSYNGVTQYGSDFAPKVVQNGYSSGEFMGLSVGKDGSLVAKYTNGETQTIGTLVLANFNNVQ 394

                        410       420       430       440       450       460       470
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 502862160 324 GLKSEGDNVWSATQSSGVALLGTAGSGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNLR 402
Cdd:PRK12637 395 GLQPVGNNAWVETSESGQATLGQPGTNGLATIAGQALEASNVDMSRELVNMIVAQRTYQANAQTIKTQDEVMQVLMNMR 473
FlgG COG4786
Flagellar basal body rod protein FlgG [Cell motility];
6-402 1.69e-59

Flagellar basal body rod protein FlgG [Cell motility];


Pssm-ID: 443816 [Multi-domain]  Cd Length: 260  Bit Score: 193.88  E-value: 1.69e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160   6 AVSGLNAAATNLDVIGNNIANSATYGFKSGSASFADMFA------------------GSKVGLGVKVAGITQDFTDGTTT 67
Cdd:COG4786    4 AASGMLAQQTRLDVISNNLANVNTTGFKRDRAVFEDLLYqlirrpgapssqgtqtpvGLQLGTGVRVAATQTDFTQGSLQ 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160  68 NTGRGLDVAISQNGFFRMVDANGSVFYSRNGQFKLDENRNLVNMQGmqltgYPVAGTPstvqtganpQPINIPTtlmaak 147
Cdd:COG4786   84 QTGNPLDLAIEGDGFFQVQTPDGETAYTRDGSFQLDADGQLVTSDG-----YPVLPEN---------GPITIPE------ 143

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160 148 atttasqqinlnstdtapttafdpanpdtynkkgtvtvfdsqgnahnmnlfyvkdatpanswkvyaqdgsvagstaslat 227
Cdd:COG4786      --------------------------------------------------------------------------------

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160 228 tltfnnngtligggninlttatipgatpatfamsfansmqqntgannivgtsqngfkpgDLVSYQINDDGTVVGNYSNEQ 307
Cdd:COG4786  144 -----------------------------------------------------------DATSITISEDGTVSVTLADGD 164

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160 308 TQVLGQIVLANFANNEGLKSEGDNVWSATQSSGVALLGTAGSGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQT 387
Cdd:COG4786  165 GQQVGQLGLVDFANPAGLEKVGDNLFRETAASGAPIVGTPGEDGLGTLRQGYLEGSNVDVVEEMVDMIEAQRAYEANSKV 244

                        410
                 ....*....|....*
gi 502862160 388 IKTQDQILNTLVNLR 402
Cdd:COG4786  245 IQTADEMLGKANNLR 259
FlgEFG_subfam TIGR03506
flagellar hook-basal body protein; This model encompasses three closely related flagellar ...
 1-384 3.75e-55

flagellar hook-basal body protein; This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR02488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.


Pssm-ID: 274616 [Multi-domain]  Cd Length: 231  Bit Score: 181.68  E-value: 3.75e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160    1 MAFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGSASFADMFAGS-----KVGLGVKVAGITQDFTDGTTTNTGRGLDV 75
Cdd:TIGR03506   1 MALYTALSGLNAQSSALDVIANNIANANTTGFKRSRAEFQDLLSQSvsgsgQVGGGVRTSGVATDFSQGSLQSTGNSLDL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160   76 AISQNGFFRMVDANGSVFYSRNGQFKLDENRNLVNMQGMQLtgypvagtpstvqTGANPQPINIPTtlmaakatttasqq 155
Cdd:TIGR03506  81 AISGDGFFVVQTPDGSEAYTRAGSFKLDADGYLVTSDGYPL-------------LDWGGGPITLPP-------------- 133

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160  156 inlnstdtapttafdpanpdtynkkgtvtvfdsqgnahnmnlfyvkdatpanswkvyaqdgsvagstaslattltfnnng 235
Cdd:TIGR03506     --------------------------------------------------------------------------------

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160  236 tliGGGNInlttatipgatpatfamsfansmqqntgannivgtsqngfkpgdlvsyQINDDGTVVGNYSNEQTQVLGQIV 315
Cdd:TIGR03506 134 ---DAGSV------------------------------------------------SIGEDGTVSATYSNGQTVELGQIA 162

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 502862160  316 LANFANNEGLKSEGDNVWSATQSSGVALLGTAGSGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSN 384
Cdd:TIGR03506 163 LANFPNPDGLRKEGGNLYSATPGSGAALVGAPGTGGFGTLVSGALEGSNVDLAEELVNMISAQRAYQAN 231
flgG PRK12636
flagellar basal body rod protein FlgG; Provisional
 7-402 2.45e-43

flagellar basal body rod protein FlgG; Provisional


Pssm-ID: 183640 [Multi-domain]  Cd Length: 263  Bit Score: 151.83  E-value: 2.45e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160   7 VSGLNAAATNLDVIGNNIANSATYGFKSGSASFADMFA-----------------GSKVGLGVKVAGITQDFTDGTTTNT 69
Cdd:PRK12636   9 ISGMKNFQTKLDVIGNNIANVNTYGFKKSRVTFKDMVSqtisgasgptanrggvnSKQVGLGSQLGAIDTIHTQGSLQTT 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160  70 GRGLDVAISQNGFFRMVDANGsVFYSRNGQFKLDENRNLVNMQGMQLTGypvagtpstvqtgANPQPINIPTtlmaakat 149
Cdd:PRK12636  89 GRPLDLAISGDGFFRVGDGDN-TAYTRAGNFYLDNEGNIVNADGLYLLG-------------MNGGRIQIPT-------- 146

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160 150 ttasqqinlnstdtapttafdpanpdtynkkgtvtvfdsqgnahnmnlfyvkdatpanswkvyaqdgsvagstaslattl 229
Cdd:PRK12636     --------------------------------------------------------------------------------

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160 230 tfnnngtligggninlttatipgatpatfamsfansmqqntgannivgtsqngfkpgDLVSYQINDDGTVVGNYSNEQTQ 309
Cdd:PRK12636 147 ---------------------------------------------------------DAQSFSIGADGTVSYVDAGGELQ 169

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160 310 VLGQIVLANFANNEGLKSEGDNVWSATQSSGVALLGTAGSGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIK 389
Cdd:PRK12636 170 TAGQIGLATFANPDGLEKAGDNLYRETLNSGTPSAVVPGEGGTGKIVSGALEMSNVDLAEEFTEMIVAQRGFQANTRIIT 249

                        410
                 ....*....|...
gi 502862160 390 TQDQILNTLVNLR 402
Cdd:PRK12636 250 TSDEILQELVNLK 262
flgG PRK12693
flagellar basal body rod protein FlgG; Provisional
 6-402 5.51e-42

flagellar basal body rod protein FlgG; Provisional


Pssm-ID: 183687 [Multi-domain]  Cd Length: 261  Bit Score: 148.47  E-value: 5.51e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160   6 AVSGLNAAATNLDVIGNNIANSATYGFKSGSASFADMF------AGSK------------VGLGVKVAGITQDFTDGTTT 67
Cdd:PRK12693   8 AKTGLDAQQTNIDVISNNLANVNTTGFKKSRAVFEDLLyqtirqPGAQssqnttlpsglqVGTGVRPVATQKIFTQGNLQ 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160  68 NTGRGLDVAISQNGFFRMVDANGSVFYSRNGQFKLDENRNLVNMQGMQLtgypvagtpstvqtganpQP-INIPTTlmaa 146
Cdd:PRK12693  88 QTGNSLDVAIEGQGFFQVQLPDGTIAYTRDGSFKLDQDGQLVTSGGYPL------------------QPeITIPEN---- 145

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160 147 katttasqqinlnstdtapttafdpanpdtynkkgtvtvfdsqgnahnmnlfyvkdatpanswkvyaqdgsvagstaslA 226
Cdd:PRK12693 146 -------------------------------------------------------------------------------A 146

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160 227 TTLTFNNNGTLigggninltTATIPGATpatfamsfansmqqntgannivgtsqngfkpgdlvsyqinddgtvvgnysne 306
Cdd:PRK12693 147 TSITIGTDGTV---------SVTQAGQA---------------------------------------------------- 165

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160 307 QTQVLGQIVLANFANNEGLKSEGDNVWSATQSSGVALLGTAGSGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQ 386
Cdd:PRK12693 166 APQVVGQITLTDFINPAGLESIGENLYLETAASGAPIEGTPGLNGLGTLRQGFLETSNVNVVEELVNMITGQRAYEMNSK 245

                        410
                 ....*....|....*.
gi 502862160 387 TIKTQDQILNTLVNLR 402
Cdd:PRK12693 246 AISTADQMLQYVNQLL 261
flgG_G_neg TIGR02488
flagellar basal-body rod protein FlgG, Gram-negative bacteria; This family consists of the ...
 2-402 1.98e-40

flagellar basal-body rod protein FlgG, Gram-negative bacteria; This family consists of the FlgG protein of the flagellar apparatus in the Proteobacteria and spirochetes. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 131541 [Multi-domain]  Cd Length: 259  Bit Score: 144.03  E-value: 1.98e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160    2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGSASFADMF-------------------AGSKVGLGVKVAGITQDFT 62
Cdd:TIGR02488   1 ALWTAATGMNAQQTNMDVISNNLANVNTTGFKKDRAEFEDLLyqterqpgaqsseqqtilpVGVQVGLGVRVVATQKLFT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160   63 DGTTTNTGRGLDVAISQNGFFRMVDANGSVFYSRNGQFKLDENRNLVNMQGmqltgYPVagtpstvqtganpQP-INIPt 141
Cdd:TIGR02488  81 QGSLQNTGNDLDLAIEGEGFFQVLMPDGTTAYTRDGAFKINAEGQLVTSNG-----YPL-------------QPeITIP- 141

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160  142 tlmaakatttasqqinlnstdtapttafdpanpdtynkkgtvtvfdsqgnahnmnlfyvkdatpanswkvyaQDgsvags 221
Cdd:TIGR02488 142 ------------------------------------------------------------------------EN------ 143

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160  222 taslATTLTFNNNGTLigggninltTATIPGATpatfamsfansmqqntgannivgtsqngfkpgdlvsyqinddgtvvg 301
Cdd:TIGR02488 144 ----ATSITVGSDGEV---------SVRQGGQT----------------------------------------------- 163

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160  302 nysneQTQVLGQIVLANFANNEGLKSEGDNVWSATQSSGVALLGTAGSGNFGTLTNGALEASNVDLSKELVNMIVAQRNY 381
Cdd:TIGR02488 164 -----EPQEVGQITLATFINPAGLEAVGENLFRETPASGPPQIGTPGLDGFGKLRQGFLEASNVNVVQEMVDMITAQRAY 238

                         410       420
                  ....*....|....*....|.
gi 502862160  382 QSNAQTIKTQDQILNTLVNLR 402
Cdd:TIGR02488 239 EMNSKAIQASDQMLQTVSQLL 259
flgE PRK08425
flagellar hook protein FlgE; Validated
 182-402 3.45e-37

flagellar hook protein FlgE; Validated


Pssm-ID: 236263 [Multi-domain]  Cd Length: 731  Bit Score: 143.30  E-value: 3.45e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160 182 TVTVFDSQGNAHNMNLFYVKDATPA---NSWKVYAQ--------DGSVAGSTASLATTLTFNNNGTLIGGGNINLT-TAT 249
Cdd:PRK08425 493 SIDIYDSLGSKHTLRIEFYKSSTTQdggAEWNMIIIvpepaeinGGSEGRPNNFEGGRLRFNNDGSLAGMNPPTLQfDPN 572

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160 250 IPGATPATFAMSFANSMQQN--TGANNIVGT---SQNGFKPGDLVSYQINDDGTVVGNYSNEQTQVLGQIVLANFANNEG 324
Cdd:PRK08425 573 NGAAAPQRINLSFGTSGSFDglTSVDKISETyaiEQDGYTAGDLMDIRFDSDGTILGAFTNGRTFALAQVALANFANNAG 652

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 502862160 325 LKSEGDNVWSATQSSGVALLGTAGSGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNLR 402
Cdd:PRK08425 653 LQAEGGNVFSQTANSGQAVIGAAGTGGRGSISGSKLEMSNVDLSRSLTQLIVIQRGFQANSKTITTSDQMLNTLLQLK 730
flgG PRK12816
flagellar basal body rod protein FlgG; Reviewed
 6-402 1.37e-30

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183766 [Multi-domain]  Cd Length: 264  Bit Score: 117.99  E-value: 1.37e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160   6 AVSGLNAAATNLDVIGNNIANSATYGFKSGSASFADMF------------------AGSKVGLGVKVAGITQDFTDGTTT 67
Cdd:PRK12816   8 AASGMNAQQFNIDTIANNLANVNTTGFKKIRAEFEDLIyqtqrragtpatedtvtpLGVQVGHGVKVAATQRLFEQGSLQ 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160  68 NTGRGLDVAISQNGFFRMVDANGSVFYSRNGQFKLDENRNLVNMQGMQLTgypvagtpstvqtganpqpinipttlmaak 147
Cdd:PRK12816  88 ATGNKLDVAIEGEGFFKILMPDGTYAYTRDGSFKIDANGQLVTSNGYRLL------------------------------ 137

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160 148 atttasqqinlnstdtaPTTAFdpanPDTYNKkgtvtvfdsqgnahnmnlfyvkdatpanswkvyaqdgsvagstaslat 227
Cdd:PRK12816 138 -----------------PEIIF----PENYIL------------------------------------------------ 148

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160 228 tltfnnngtligggninlttatipgatpatfamsfansmqqntganNIVGTSQNGfkpgdLVSYQINDDGTVVgnysneq 307
Cdd:PRK12816 149 ----------------------------------------------NSITISEEG-----IVSVKVGEDNDPI------- 170

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160 308 tqVLGQIVLANFANNEGLKSEGDNVWSATQSSGVALLGTAGSGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQT 387
Cdd:PRK12816 171 --ELGQIELYRFVNPAGLSAIGKNLFKETIASGQEIPGIPGSEGFGRVLQGFLEMSNVSIVEEMVTMIVAQRAYEINSKA 248

                        410
                 ....*....|....*
gi 502862160 388 IKTQDQILNTLVNLR 402
Cdd:PRK12816 249 IQTSDNMLGTANNLK 263
flgG PRK12692
flagellar basal body rod protein FlgG; Reviewed
 2-398 7.94e-25

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 139158 [Multi-domain]  Cd Length: 262  Bit Score: 102.23  E-value: 7.94e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160   2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGSASFADMF-------------------AGSKVGLGVKVAGITQDFT 62
Cdd:PRK12692   3 ALAIAATGMSAQQLNLEVIANNIANLNTTGFKGARAEFTDLLyqaerqqgvpnqagqeavpEGAMLGLGVRAAAIRNLHR 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160  63 DGTTTNTGRGLDVAISQNGFFRMVDANGSVFYSRNGQFKLDENRNLVNMQGMQLtgypvagtpstvqtganpqpiniptt 142
Cdd:PRK12692  83 QGSLAQTGNQLDLAVNGRGYFQVTSPNGEIQYTRAGSFNKNAAGQLVTMEGYAV-------------------------- 136

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160 143 lmaakatttasqqinlnstdtapttafDPAnpdtynkkgtvtvfdsqgnahnmnlfyvkdatpanswkvyaqdgsvagst 222
Cdd:PRK12692 137 ---------------------------DPA-------------------------------------------------- 139

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160 223 aslattltfnnngtligggninlttATIPgatpatfamsfansmqQNTgannivgtsqngfkpgdlVSYQINDDGTVVGN 302
Cdd:PRK12692 140 -------------------------ILIP----------------QNT------------------TQVTINESGQVFAK 160

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160 303 YSNEQT-QVLGQIVLANFANNEGLKSEGDNVWSATQSSGVALLGTAGSGNFGTLTNGALEASNVDLSKELVNMIVAQRNY 381
Cdd:PRK12692 161 IDGQVApQNLGQLTLANFANESGLEPLGNGLYRETPASGAPVVGNPGDVGFGKIQQGYLEGSNVDPVKEITSLITAQRAF 240

                        410
                 ....*....|....*..
gi 502862160 382 QSNAQTIKTQDQILNTL 398
Cdd:PRK12692 241 EMNSKVIQAADEMAGTV 257
flgE PRK08425
flagellar hook protein FlgE; Validated
 7-354 2.36e-24

flagellar hook protein FlgE; Validated


Pssm-ID: 236263 [Multi-domain]  Cd Length: 731  Bit Score: 105.16  E-value: 2.36e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160   7 VSGLNAAATNLDVIGNNIANSATYGFKSGSASFADMFAGSK-----------------VGLGVKVAGITQDFTDGTTTNT 69
Cdd:PRK08425   9 VSGLQAHQIAMDVEGNNIANVNTTGFKYSRASFVDMLSQTKliatapkgglggqndmqIGLGVGVSSTTKIFSQGSIQNT 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160  70 GRGLDVAISQNGFFrMVDANGSV--FYSRNGQFKLDENRNLVNMQGMQLTGYPVAGTPSTVQTGANPQPINIPTTL-MAA 146
Cdd:PRK08425  89 DKNTDLAIQGDGFF-IVSPDGGTtrNYTRDGDFKFDAQGNFVNNGGYVVQGWVSDTDTGTIDSTGPIQNIRIDPGMvMPA 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160 147 KATTTASQQINLNS-----TDTAPTTAFD--------PANPDTYNKKGTVTVFDSQGN----AHNMNLFYVKDATPAN-- 207
Cdd:PRK08425 168 RASTEVSIKANLNSgrhigTQSAPIYALDsvhgwndkTGDTAKTNDDGINPFYDSSKNlaqvAEDMGVLFNADGDALNlr 247

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160 208 ----SWKVYAQDGSVAGSTASlATTLTFNNNGTLIGGGNINlttaTIPGATPATFAMSFANSMQQNTGANNIVGTSQngf 283
Cdd:PRK08425 248 egqgIWVSYADAKMTKDIVPS-AENLDITLNGVKISFTNDS----AVSGTSSLVAAKNAINAQKSKTGVEAYLDGNQ--- 319

                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 502862160 284 kpgdLVSYQINDDGTvVGNYSNEQTQVLGQIVLANFANNEGLKSEGDNVWSATQSSGVALLGTAGSGNFGT 354
Cdd:PRK08425 320 ----LRLENTNSLGT-TEKMKNIVITVNGTGTFANFVDGDKDITAFKYSYTSSPSPIVPMYNNSDIRQFRT 385
flgE_epsilon TIGR02489
flagellar hook protein FlgE, epsilon proteobacterial; Members of this family are flagellar ...
 7-323 3.68e-19

flagellar hook protein FlgE, epsilon proteobacterial; Members of this family are flagellar hook proteins, designated FlgE, as found in the epsilon subdivision of the Proteobacteria (Helicobacter, Wolinella, and Campylobacter). These proteins differ significantly in architecture from proteins designated FlgE in other lineages; the N-terminal and C-terminal domains are homologous, but members of this family only contain a large central domain that is surface-exposed and variable between strains.


Pssm-ID: 131542 [Multi-domain]  Cd Length: 719  Bit Score: 89.62  E-value: 3.68e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160    7 VSGLNAAATNLDVIGNNIANSATYGFKSGSASFADMFAGSK-----------------VGLGVKVAGITQDFTDGTTTNT 69
Cdd:TIGR02489   9 VSGMQAHQVALDVEGNNIANVNTTGFKYSRADFGDMLSQTVkiatspydglggqndlsIGLGVSISSTTKIFSQGSVQTT 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160   70 GRGLDVAISQNGFFRMVDANGSV-FYSRNGQFKLDENRNLVNMQGMQLTGY------PVAGTPS-----TVQTGANPQPI 137
Cdd:TIGR02489  89 NSKTDVAINGDGFFIVSDDGGLTnYYTRDGAFKFDAYGNFVNNSGYIVQGWnrpleaAESGTMSdwddqTVDSTRPPQNI 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160  138 NI-PTTLMAAKATTTASQQINLNSTDTAPTTAFDPANPDTYNK--KGTVTVFDSQGN----AHNMNLFYVKDATPAN--- 207
Cdd:TIGR02489 169 FIdPGMVIPAAATTEVALKANLNAGLNIDTSSNLYALDSTHQTaaDGTTAFYDSSGEvtqkGEDAGVLFNASGTALNlre 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160  208 ---SWKVYAqDGSVAGSTASLATTLTFNNNGTLIGGGNInlttATIPGATPATFAMSFANSMQQNTGANNIVGTSQNGFK 284
Cdd:TIGR02489 249 gqgIWVSYA-DAKYSTNKVVVSAFDTITLNGVRIQFANI----SNIDGVSSYVAAQNAINDTRDGTGVRAVKSAGQLRFV 323

                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 502862160  285 PGDlvsyqiNDDGTvvGNYSNEQTQVLGQIVLANFANNE 323
Cdd:TIGR02489 324 NDN------SDDGT--DNMKNINITVSGAGELWNFTFNQ 354
flgG PRK12817
flagellar basal body rod protein FlgG; Reviewed
 2-116 4.34e-17

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183767 [Multi-domain]  Cd Length: 260  Bit Score: 80.51  E-value: 4.34e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160   2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGSASFADMFAGS--------------KVGLGVKVAGITQDFTDGTTT 67
Cdd:PRK12817   4 AFWNSKSGMNAQQEKLDSISNNLANVNTTGYKREDVSFSDLVYETldrkgyptndkpeiITGTGVKATNWIRDNQQGNLL 83

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 502862160  68 NTGRGLDVAISQNGFFRMVDANGSVFYSRNGQFKLDENRNLVNMQGMQL 116
Cdd:PRK12817  84 TTGNKTDLAIDGEGFFRVIMADGTYAYTRAGNFNIDSNGMLVDDNGNRL 132
FlgF COG4787
Flagellar basal body rod protein FlgF [Cell motility];
6-140 3.89e-16

Flagellar basal body rod protein FlgF [Cell motility];


Pssm-ID: 443817 [Multi-domain]  Cd Length: 246  Bit Score: 77.48  E-value: 3.89e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160   6 AVSGLNAAATNLDVIGNNIANSATYGFKSGSASFADMFAgskVGLG------VKVAGITQDFTDGTTTNTGRGLDVAISQ 79
Cdd:COG4787    8 AMSGAKQTLEAQAVTANNLANASTTGFRADLEAARAVPV---QGEGlptrafAVTETPGTDFSPGPLQQTGRPLDVAIQG 84

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 502862160  80 NGFFRMVDANGSVFYSRNGQFKLDENRNLVNMQgmqltGYPVAGtpstvqtgaNPQPINIP 140
Cdd:COG4787   85 DGWLAVQAPDGSEAYTRAGDLQVDANGQLVTGN-----GLPVLG---------DGGPITIP 131
Flg_bbr_C pfam06429
Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of ...
 323-401 5.10e-16

Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.


Pssm-ID: 428939 [Multi-domain]  Cd Length: 74  Bit Score: 72.30  E-value: 5.10e-16
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 502862160  323 EGLKSEGDNVWSATQSSGVALLGTAGsgnfgTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 401
Cdd:pfam06429   1 AGLEKGGDNLFRETDGAPILGAGADG-----RVQQGYLEGSNVNPVEEMVNMIEAQRAYEANSKVIQTADEMLQTANQL 74
flgE PRK05841
flagellar hook protein FlgE; Validated
 275-402 5.47e-15

flagellar hook protein FlgE; Validated


Pssm-ID: 235620 [Multi-domain]  Cd Length: 603  Bit Score: 76.81  E-value: 5.47e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160 275 IVGTSQNGFKPGDLVSYQINDDGTVVGNYSNEQTQVLGQIVLANFANNEGLKSEGDNVWSATQ---------SSGVALLG 345
Cdd:PRK05841 464 LLEASQDGKPRGILRDVRIDENGVISLAFSNGVVEPMGRIGIAAFTNDQGLRKVGGNLFEMQEgtingenrpLSGNPILG 543

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 502862160 346 TAGSGN--FGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNLR 402
Cdd:PRK05841 544 WDEEGKlkFGKVRHKYLETSNVDAGNALTNLILMQRGYSMNARAFGTGDDLIKEAISLK 602
flgF PRK12689
flagellar basal-body rod protein FlgF;
17-139 2.47e-14

flagellar basal-body rod protein FlgF;


Pssm-ID: 183684 [Multi-domain]  Cd Length: 253  Bit Score: 72.47  E-value: 2.47e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160  17 LDVIGNNIANSATYGFKSGSASF---------ADMFAGSKVGLG-VKVAGITQDFTDGTTTNTGRGLDVAISQNGFFrMV 86
Cdd:PRK12689  19 LDVVANNVANVNTNGFKARSSLFqeylmpgahEDNFQRPDRRVSyVQDRGTPLDLSQGPLEQTKNPLDVAIDGDAFL-AV 97

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 502862160  87 DANGSVFYSRNGQFKLDENRNLVNMqgmqlTGYPVAGTPSTVQTGANPQPINI 139
Cdd:PRK12689  98 QTPQGERYTRDGALEINAQGQLVTS-----DGYPVLGTGGPITFQPTDTGIAI 145
flgF TIGR02490
flagellar basal-body rod protein FlgF; Members of this protein are FlgF, one of several ...
 292-382 2.24e-13

flagellar basal-body rod protein FlgF; Members of this protein are FlgF, one of several homologous flagellar basal-body rod proteins in bacteria. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274160 [Multi-domain]  Cd Length: 89  Bit Score: 65.34  E-value: 2.24e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160  292 QINDDGTVVGNysneqTQVLGQIVLANFANNEGLKSEGDNVWSATQSSGVALLGTAGsgnfgtLTNGALEASNVDLSKEL 371
Cdd:TIGR02490  10 TIGADGTISQD-----GEEVGRLGLVNFDNPNQLQREGDGLFRATGGGPAPADSNVR------VVQGYLEGSNVNAVSEM 78

                          90
                  ....*....|.
gi 502862160  372 VNMIVAQRNYQ 382
Cdd:TIGR02490  79 VDMIEAQRAYE 89
flgF PRK12640
flagellar basal body rod protein FlgF; Reviewed
 6-140 6.12e-13

flagellar basal body rod protein FlgF; Reviewed


Pssm-ID: 183642 [Multi-domain]  Cd Length: 246  Bit Score: 67.96  E-value: 6.12e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160   6 AVSGLNAAATNLDVIGNNIANSATYGFKSGSASFADMFAGSKvGLGVKVAGITQ----DFTDGTTTNTGRGLDVAISQNG 81
Cdd:PRK12640   8 AMSGASQNLNQQAVVANNLANASTPGFRADLAQARAVPVFGE-GLPTRVFALAStpgaDFSPGPLQTTGRPLDVALQGDG 86

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 502862160  82 FFRMVDANGSVFYSRNGQFKLDENRNLVNMQGMqltgyPVAGtpstvqtgaNPQPINIP 140
Cdd:PRK12640  87 WLAVQAPDGSEAYTRNGSLQVDANGQLRTANGL-----PVLG---------DGGPIAVP 131
flgG PRK12818
flagellar basal body rod protein FlgG; Reviewed
 3-179 1.11e-11

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183768 [Multi-domain]  Cd Length: 256  Bit Score: 64.34  E-value: 1.11e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160   3 FSQAVSGLNAAATNLDVIGNNIANSATYGFKSG---SASFADMF-------AGSK--------VGLGVKVAGITQDFTDG 64
Cdd:PRK12818   5 LYTAVSGMITLEAKQDVITNNLANVNTVGYKSDnlaFKSFEDVLienydkkVGNKnvkniiggLSMGSKIDEVNTLFTQG 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160  65 TTTNTGRGLDVAISQNGFFRMVDANGSVFYSRNGQFKLDENRNLVNMqgmqlTGYPVAGTpsTVQTGANpQPINIPTtlm 144
Cdd:PRK12818  85 IIKSTDKPTDFAIQGRGFFTVERNAGNNYYTRDGHFHVDTQGYLVND-----SGYYVLGR--NNATGAR-EPINVGN--- 153

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 502862160 145 aAKATTTASQQINLnstDTAPTTAFDPANPDTYNK 179
Cdd:PRK12818 154 -GKFSTDADGNISL---DGNASYKFNVADFNDYNS 184
flgF PRK12642
flagellar basal-body rod protein FlgF;
6-134 3.35e-10

flagellar basal-body rod protein FlgF;


Pssm-ID: 237153 [Multi-domain]  Cd Length: 241  Bit Score: 60.06  E-value: 3.35e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160   6 AVSGLNAAATNLDVIGNNIANSATYGFKSGSASFADMFAGSKvglGVKVAGITQ--DFTD---GTTTNTGRGLDVAISQN 80
Cdd:PRK12642   8 ALSSQMALEKRLDTIADNVANVNTVGFRATEVKFDTVVSDTA---SKKVAFVSQgkSYLSteaGPLTKTGNPLDFAVKGD 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 502862160  81 GFFRMVDANGSVfYSRNGQFKLDENRNLVNmqgmqLTGYPV---AGTPSTVQTGANP 134
Cdd:PRK12642  85 AWFSFDTPAGQV-YTRDGRFTMTSTGELVS-----VTGYPVldaGGAPIQLNPGGGE 135
flgF PRK12690
flagellar hook-basal body complex protein;
19-116 7.05e-10

flagellar hook-basal body complex protein;


Pssm-ID: 183685 [Multi-domain]  Cd Length: 238  Bit Score: 58.93  E-value: 7.05e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160  19 VIGNNIANSATYGFKSGSASFADMFAGSKVG---LGVKVAGITQ-DFTDGTTTNTGRGLDVAISQNGFFrMVDANGSVFY 94
Cdd:PRK12690  21 VVANNIANASTTGFRREGLVFSEYVKSLDSGeasLSMARASGRQtDLEQGGLTQTGGQFDFAIEGEGFF-MVETPQGERL 99

                         90       100
                 ....*....|....*....|..
gi 502862160  95 SRNGQFKLDENRNLVNMQGMQL 116
Cdd:PRK12690 100 TRAGSFTPNAEGELVDPDGNRL 121
FlaE pfam07559
Flagellar basal body protein FlaE; This family consists of several bacterial FlaE flagellar ...
 182-269 1.81e-08

Flagellar basal body protein FlaE; This family consists of several bacterial FlaE flagellar proteins. These proteins are part of the flageller basal body rod complex.


Pssm-ID: 429537 [Multi-domain]  Cd Length: 94  Bit Score: 51.63  E-value: 1.81e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160  182 TVTVFDSQGNAHNMNLFYVKDATPANSWKVYAQdgsVAGSTASLATTLTFNNNGTLIGGGNINLTTATIP-GATPAT-FA 259
Cdd:pfam07559   5 SVTVYDSLGNSHTLTVYFVKTATGPNTWEVYVT---VDGEVGDGDGTAGTASTAGGLMTGTLTFDSITLDfGLTGSTqYA 81

                          90
                  ....*....|.
gi 502862160  260 MSFA-NSMQQN 269
Cdd:pfam07559  82 SAFSvTSLSQD 92
flgF PRK12643
flagellar basal body rod protein FlgF; Reviewed
 8-168 1.12e-07

flagellar basal body rod protein FlgF; Reviewed


Pssm-ID: 139117 [Multi-domain]  Cd Length: 209  Bit Score: 52.15  E-value: 1.12e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160   8 SGLNAAATNLD---VIGNNIANSATYGFKSGSASF-ADMFAGSKVGLGVKVAGITQ--DFTDGTTTNTGRGLDVAISQNG 81
Cdd:PRK12643   7 TAMGAARQSLElqaVTANNLANASTPGFRAQLAAMrAVPIDGPSLATRTMVTTSTPgvDISQGTMNFSGRPLDVALQQDG 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160  82 FFRMVDANGSVFYSRNGQFKLDENRNlvnmqgMQLTGYPVAGtpstvqtgaNPQPINIP---TTLMAAKATTTAsqqinL 158
Cdd:PRK12643  87 YLAVQLPDGSEAYTRNGNIQISANGQ------MTVQGYPLMG---------DNGPIDVPpqaAVTIAADGTISA-----L 146

                        170
                 ....*....|
gi 502862160 159 NSTDTAPTTA 168
Cdd:PRK12643 147 NAGDSPNTIA 156
flgF PRK12690
flagellar hook-basal body complex protein;
283-400 1.58e-06

flagellar hook-basal body complex protein;


Pssm-ID: 183685 [Multi-domain]  Cd Length: 238  Bit Score: 48.91  E-value: 1.58e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160 283 FKPGDLVSYQINDDGTVVGNysneqTQVLGQIVLANFANNEGLKSEGDNVWSAtqSSGVALLGTAgsgnfgTLTNGALEA 362
Cdd:PRK12690 130 FIPPDARSVAVGADGTLSAD-----GQPLGQIGLYQPTDPLGLRREGGTRFRA--EGGVEPAEGA------RLLQGFLEG 196

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 502862160 363 SNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 400
Cdd:PRK12690 197 SNVNPVSEIARMIEVQRAYELGQSFLDREDERIRTTIR 234
flgF PRK12641
flagellar basal-body rod protein FlgF;
19-108 2.64e-06

flagellar basal-body rod protein FlgF;


Pssm-ID: 105809 [Multi-domain]  Cd Length: 252  Bit Score: 48.40  E-value: 2.64e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160  19 VIGNNIANSATYGFKSG------SASFADMFAGSKvglgvKVAGITQDFTDGTTTNTGRGLDVAISQNGFFRMVDANGSV 92
Cdd:PRK12641  21 IIANNLANISTTGFKEKfilaiqNHNVKNLYNSDK-----KITKEYYNLSPGTLRYTGRNLDLFIKDNGWLTIKDTNGQE 95

                         90
                 ....*....|....*.
gi 502862160  93 FYSRNGQFKLDENRNL 108
Cdd:PRK12641  96 AYTKNGHLKINSKRKL 111
FlgC COG1558
Flagellar basal body rod protein FlgC [Cell motility];
357-395 2.15e-05

Flagellar basal body rod protein FlgC [Cell motility];


Pssm-ID: 441166 [Multi-domain]  Cd Length: 135  Bit Score: 43.95  E-value: 2.15e-05
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 502862160 357 NGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQIL 395
Cdd:COG1558   89 DGYVRYPNVNVVEEMVDMISASRSYEANVEVINTAKSML 127
flgC PRK05681
flagellar basal body rod protein FlgC; Reviewed
 1-60 8.10e-05

flagellar basal body rod protein FlgC; Reviewed


Pssm-ID: 235556 [Multi-domain]  Cd Length: 135  Bit Score: 42.12  E-value: 8.10e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862160   1 MAFSQAV----SGLNAAATNLDVIGNNIANSATYG------FKSGSASFADMFAGSKVGLGVKVAGITQD 60
Cdd:PRK05681   1 MSLFSSFniagSGLSAQSQRLNVISSNIANADSTAapdgdpYRRKQVVFAAELDPGQGTGGVKVAKIVED 70
Flg_bb_rod pfam00460
Flagella basal body rod protein;
3-32 1.66e-04

Flagella basal body rod protein;


Pssm-ID: 459821 [Multi-domain]  Cd Length: 30  Bit Score: 38.32  E-value: 1.66e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 502862160    3 FSQAVSGLNAAATNLDVIGNNIANSATYGF 32
Cdd:pfam00460   1 LYTAVSALNAQQIRLDVIANNIANANTPGY 30
FlgK COG1256
Flagellar hook-associated protein FlgK [Cell motility];
1-59 2.00e-04

Flagellar hook-associated protein FlgK [Cell motility];


Pssm-ID: 440868 [Multi-domain]  Cd Length: 479  Bit Score: 43.33  E-value: 2.00e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 502862160   1 MAFSQAVSGLNAAATNLDVIGNNIANSATYGFK----SGSASFADMFAGSKVGLGVKVAGITQ 59
Cdd:COG1256    4 SALNIALSGLNAAQRALDVTSHNIANANTPGYSrqrvVLSAAGPTATGAGQVGTGVRVTGIRR 66
FlgC TIGR01395
flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components ...
 357-396 2.37e-04

flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components of bacterial flagella that share a domain described by pfam00460. FlgC is part of the basal body. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 130462 [Multi-domain]  Cd Length: 135  Bit Score: 40.80  E-value: 2.37e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 502862160  357 NGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILN 396
Cdd:TIGR01395  89 EGYVKMPNVNVVEEMVDMIEASRSYEANVQVFNTAKSMFL 128
flgC PRK05681
flagellar basal body rod protein FlgC; Reviewed
 357-396 3.38e-04

flagellar basal body rod protein FlgC; Reviewed


Pssm-ID: 235556 [Multi-domain]  Cd Length: 135  Bit Score: 40.19  E-value: 3.38e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 502862160 357 NGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILN 396
Cdd:PRK05681  88 KGYVKYPNVNVVVEMVDMISASRSYEANVEVLNAAKSMMQ 127
FlgK COG1256
Flagellar hook-associated protein FlgK [Cell motility];
362-402 4.84e-04

Flagellar hook-associated protein FlgK [Cell motility];


Pssm-ID: 440868 [Multi-domain]  Cd Length: 479  Bit Score: 42.17  E-value: 4.84e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 502862160 362 ASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNLR 402
Cdd:COG1256  438 VSGVNLDEEMANLIKFQQAYQANARVITTADEMLDTLLNIV 478
flgK PRK12715
flagellar hook-associated protein FlgK; Provisional
 6-60 5.70e-04

flagellar hook-associated protein FlgK; Provisional


Pssm-ID: 183698 [Multi-domain]  Cd Length: 649  Bit Score: 42.03  E-value: 5.70e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 502862160   6 AVSGLNAAATNLDVIGNNIANSATYGFKSGSASF----ADMFAGSKVGLGVKVAGITQD 60
Cdd:PRK12715   7 AYSGLNAFQRALDVTGNNIANFKTRGYSRQSIQFtpiaSNRYAGSYIGAGVSVSSIYRN 65
FlgC COG1558
Flagellar basal body rod protein FlgC [Cell motility];
2-60 8.00e-04

Flagellar basal body rod protein FlgC [Cell motility];


Pssm-ID: 441166 [Multi-domain]  Cd Length: 135  Bit Score: 39.33  E-value: 8.00e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 502862160   2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGSA------SFADMFAGSKVGL-GVKVAGITQD 60
Cdd:COG1558    6 AFDIAGSGLTAQRLRLNVIASNLANANSTRTSDGGPyrrkqvVFEAVLDRAGSGAaGVRVAGIVED 71
flgK_ends TIGR02492
flagellar hook-associated protein FlgK; The flagellar hook-associated protein FlgK of ...
 1-59 9.49e-04

flagellar hook-associated protein FlgK; The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274162 [Multi-domain]  Cd Length: 323  Bit Score: 40.79  E-value: 9.49e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 502862160    1 MAFSQAVSGLNAAATNLDVIGNNIANSATYGFK----SGSASFADMFAGSKVGLGVKVAGITQ 59
Cdd:TIGR02492   1 SLLNIAKSGLSASQIALSVTSNNIANANTPGYSrqraVLTAVPAGGQGGKQIGTGVKVTSIRR 63
flgC PRK12632
flagellar basal body rod protein FlgC; Provisional
 2-60 7.06e-03

flagellar basal body rod protein FlgC; Provisional


Pssm-ID: 183637 [Multi-domain]  Cd Length: 130  Bit Score: 36.32  E-value: 7.06e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 502862160   2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGSASFADMFAGSKVGLGVKVAGITQD 60
Cdd:PRK12632   7 SLSVSASGMRAQALRLRHVSENIANADTPGYRRKTVSFQEARDFDPGSGLVSTGPVRLD 65
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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