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Conserved domains on  [gi|502862957|ref|WP_013097933|]
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MULTISPECIES: ABC transporter permease [Enterobacter]

Protein Classification

ABC transporter permease( domain architecture ID 10003065)

ABC transporter permease is the transmembrane (TM) subunit of a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter responsible for the translocation across the membrane of one or more from a variety of substrates including gylcine betaine, choline, and carnitine

Gene Ontology:  GO:0140359|GO:0042626|GO:0055085|GO:0016020
PubMed:  25750732|24638992|31571164|27273632|26517919|18535149|17723295
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 42-242 9.77e-72

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


:

Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 218.00  E-value: 9.77e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862957  42 QQESFINLALAHLWLVALSSAIAVVLGVGAGIVVTRPwgREFRPLVETIAAIGQTFPPVAVLAIAVPVIGFGQQPAIIAL 121
Cdd:COG1174   12 NRDGILALLLEHLLLVLLALLIALLIAVPLGILITRR--RRLAGLVLGVANILQTIPSLALLALLIPLLGIGPAPAIIAL 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862957 122 ILYGVLPVLQGTLAGIASVPASVLSVAEGMGMSSGQRLCKVELPLAAPVIIAGIRTSVIINIGTATIASTVGANTLGTPI 201
Cdd:COG1174   90 VLYALLPILRNTYTGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPVILAGIRTAAVQNIGTATLAALIGAGGLGDLI 169

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 502862957 202 IIGLSGFNTAYIVQGAVLVALAAIVIDRLFERLARLLSRHR 242
Cdd:COG1174  170 FDGLQLNNTALILAGAILVALLALLVDLLLALLERLLTPRG 210
 
Name Accession Description Interval E-value
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 42-242 9.77e-72

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 218.00  E-value: 9.77e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862957  42 QQESFINLALAHLWLVALSSAIAVVLGVGAGIVVTRPwgREFRPLVETIAAIGQTFPPVAVLAIAVPVIGFGQQPAIIAL 121
Cdd:COG1174   12 NRDGILALLLEHLLLVLLALLIALLIAVPLGILITRR--RRLAGLVLGVANILQTIPSLALLALLIPLLGIGPAPAIIAL 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862957 122 ILYGVLPVLQGTLAGIASVPASVLSVAEGMGMSSGQRLCKVELPLAAPVIIAGIRTSVIINIGTATIASTVGANTLGTPI 201
Cdd:COG1174   90 VLYALLPILRNTYTGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPVILAGIRTAAVQNIGTATLAALIGAGGLGDLI 169

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 502862957 202 IIGLSGFNTAYIVQGAVLVALAAIVIDRLFERLARLLSRHR 242
Cdd:COG1174  170 FDGLQLNNTALILAGAILVALLALLVDLLLALLERLLTPRG 210
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 68-240 8.12e-16

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 72.72  E-value: 8.12e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862957   68 GVGAGIVVTRPWGREFRPLVETIAAIGQTFPPVAVLAIAVPV-----IGFGQQPAIIALILYGVLPVLQGTLAGIASVPA 142
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIailsiLGHGILPAIILALLGWAGYARLIRRAALRSLPS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862957  143 SVLSVAEGMGMSSGQRLCKVELPLAAPVIIAGIRTSVIINIGTATIASTVGANT-LGTPIIIGLSGFNTAYIVQGAVLVA 221
Cdd:pfam00528  81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPgLGLLLIEAILGYDYPEIQGPVLAAA 160

                         170
                  ....*....|....*....
gi 502862957  222 LAAIVIDRLFERLARLLSR 240
Cdd:pfam00528 161 LILLLLNLLVDILQRLLDP 179
PRK10952 PRK10952
proline/glycine betaine ABC transporter permease ProW;
50-236 3.56e-15

proline/glycine betaine ABC transporter permease ProW;


Pssm-ID: 236805  Cd Length: 355  Bit Score: 73.59  E-value: 3.56e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862957  50 ALAHLWLVALSSAIAVVLGVGAGIVVTRP--WGREFRPLVETIaaigQTFPPVAVLAIAVPVIGFGQQPAIIALILYGVL 127
Cdd:PRK10952 146 AMVTLALVLTALLFCIVIGLPLGIWLARSprAAKIIRPLLDAM----QTTPAFVYLVPIVMLFGIGNVPGVVVTIIFALP 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862957 128 PVLQGTLAGIASVPASVLSVAEGMGMSSGQRLCKVELPLAAPVIIAGIRTSVIINIGTATIASTVGANTLGTPIIIGLSG 207
Cdd:PRK10952 222 PIVRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGGLGQMVLRGIGR 301

                        170       180
                 ....*....|....*....|....*....
gi 502862957 208 FNTAYIVQGAVLVALAAIVIDRLFERLAR 236
Cdd:PRK10952 302 LDMGLATVGGVGIVILAIILDRLTQAVGR 330
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 50-227 1.19e-09

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 56.13  E-value: 1.19e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862957  50 ALAHLWLVALSSAIAVVLGVGAGIVVTRPWGReFRPLVETIAAIGQTFPPVAVLAIAVPVIGFGQQ---------PAIIA 120
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGK-LDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGwgilpglglPALIL 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862957 121 LILYGVLPVLQGTLAGIASVPASVLSVAEGMGMSSGQRLCKVELPLAAPVIIAGIRTSVIINIGTATIASTVGANTLGTP 200
Cdd:cd06261   80 ALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGP 159

                        170       180
                 ....*....|....*....|....*..
gi 502862957 201 IIIGLSGFNTAYIVQGAVLVALAAIVI 227
Cdd:cd06261  160 GTGLLLIFAILFPGDLGVAAAVALILL 186
 
Name Accession Description Interval E-value
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 42-242 9.77e-72

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 218.00  E-value: 9.77e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862957  42 QQESFINLALAHLWLVALSSAIAVVLGVGAGIVVTRPwgREFRPLVETIAAIGQTFPPVAVLAIAVPVIGFGQQPAIIAL 121
Cdd:COG1174   12 NRDGILALLLEHLLLVLLALLIALLIAVPLGILITRR--RRLAGLVLGVANILQTIPSLALLALLIPLLGIGPAPAIIAL 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862957 122 ILYGVLPVLQGTLAGIASVPASVLSVAEGMGMSSGQRLCKVELPLAAPVIIAGIRTSVIINIGTATIASTVGANTLGTPI 201
Cdd:COG1174   90 VLYALLPILRNTYTGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPVILAGIRTAAVQNIGTATLAALIGAGGLGDLI 169

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 502862957 202 IIGLSGFNTAYIVQGAVLVALAAIVIDRLFERLARLLSRHR 242
Cdd:COG1174  170 FDGLQLNNTALILAGAILVALLALLVDLLLALLERLLTPRG 210
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 54-242 5.12e-20

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 85.58  E-value: 5.12e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862957  54 LWLVALSSAIAVVLGVGAGIVVTrpWGREFRPLVETIAAIGQTFPPVAVLAIAVPVIGFGQQPAIIALILYGVLPVLQGT 133
Cdd:COG0600   67 LLRVLLGFALAALLGVPLGLLLG--LSRLLRRLLDPLLVFLRPIPPLALAPLLILWFGIGEASKIFVIFLGAFFPILLNT 144

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862957 134 LAGIASVPASVLSVAEGMGMSSGQRLCKVELPLAAPVIIAGIRTSVIINIGTATIASTVGANT-LGTPIIIGLSGFNTAY 212
Cdd:COG0600  145 AAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTGLRIALGLAWIGLVVAELLGASSgLGYLILDARQLLDTDL 224

                        170       180       190
                 ....*....|....*....|....*....|
gi 502862957 213 IVQGAVLVALAAIVIDRLFERLARLLSRHR 242
Cdd:COG0600  225 VFAAILVIGLLGLLLDLLLRLLERRLLRWR 254
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 68-240 8.12e-16

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 72.72  E-value: 8.12e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862957   68 GVGAGIVVTRPWGREFRPLVETIAAIGQTFPPVAVLAIAVPV-----IGFGQQPAIIALILYGVLPVLQGTLAGIASVPA 142
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIailsiLGHGILPAIILALLGWAGYARLIRRAALRSLPS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862957  143 SVLSVAEGMGMSSGQRLCKVELPLAAPVIIAGIRTSVIINIGTATIASTVGANT-LGTPIIIGLSGFNTAYIVQGAVLVA 221
Cdd:pfam00528  81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPgLGLLLIEAILGYDYPEIQGPVLAAA 160

                         170
                  ....*....|....*....
gi 502862957  222 LAAIVIDRLFERLARLLSR 240
Cdd:pfam00528 161 LILLLLNLLVDILQRLLDP 179
PRK10952 PRK10952
proline/glycine betaine ABC transporter permease ProW;
50-236 3.56e-15

proline/glycine betaine ABC transporter permease ProW;


Pssm-ID: 236805  Cd Length: 355  Bit Score: 73.59  E-value: 3.56e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862957  50 ALAHLWLVALSSAIAVVLGVGAGIVVTRP--WGREFRPLVETIaaigQTFPPVAVLAIAVPVIGFGQQPAIIALILYGVL 127
Cdd:PRK10952 146 AMVTLALVLTALLFCIVIGLPLGIWLARSprAAKIIRPLLDAM----QTTPAFVYLVPIVMLFGIGNVPGVVVTIIFALP 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862957 128 PVLQGTLAGIASVPASVLSVAEGMGMSSGQRLCKVELPLAAPVIIAGIRTSVIINIGTATIASTVGANTLGTPIIIGLSG 207
Cdd:PRK10952 222 PIVRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGGLGQMVLRGIGR 301

                        170       180
                 ....*....|....*....|....*....
gi 502862957 208 FNTAYIVQGAVLVALAAIVIDRLFERLAR 236
Cdd:PRK10952 302 LDMGLATVGGVGIVILAIILDRLTQAVGR 330
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 50-227 1.19e-09

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 56.13  E-value: 1.19e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862957  50 ALAHLWLVALSSAIAVVLGVGAGIVVTRPWGReFRPLVETIAAIGQTFPPVAVLAIAVPVIGFGQQ---------PAIIA 120
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGK-LDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGwgilpglglPALIL 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862957 121 LILYGVLPVLQGTLAGIASVPASVLSVAEGMGMSSGQRLCKVELPLAAPVIIAGIRTSVIINIGTATIASTVGANTLGTP 200
Cdd:cd06261   80 ALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGP 159

                        170       180
                 ....*....|....*....|....*..
gi 502862957 201 IIIGLSGFNTAYIVQGAVLVALAAIVI 227
Cdd:cd06261  160 GTGLLLIFAILFPGDLGVAAAVALILL 186
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
5-174 5.43e-08

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 52.86  E-value: 5.43e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862957   5 RDPLLWLTGLFVALLFLMPHSGALFSSLFPGLP--------RPVYQQESFINLALAHLWLVALSSAIAVVLGVGAGIVVT 76
Cdd:COG1178  287 RWLALALCLLLVLLGLLLPLLALLLWSLTKALDdnltldnyRFVLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVR 366

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862957  77 RPWGReFRPLVETIAAIGQTFPPVaVLAIAV-----PVIGFGQQPAIIALIL-YGV--LPVLQGTL-AGIASVPASVLSV 147
Cdd:COG1178  367 RRRGR-LARLLDRLAMLPYAVPGI-VLGLGLlllfnRPLPLLLYGTLAILVLaYVVrfLPFALRSLeAALAQIDPSLEEA 444

                        170       180
                 ....*....|....*....|....*..
gi 502862957 148 AEGMGMSSGQRLCKVELPLAAPVIIAG 174
Cdd:COG1178  445 ARSLGASPLRTLRRVTLPLLRPGLLAA 471
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
8-236 2.95e-07

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 50.54  E-value: 2.95e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862957   8 LLWLTGLFVALLFLMPHSGALFSSLFPGLP--RPVYQQESFINLALAHLWLVALSSAIAVVLGVGAGIVVTR---PWGRE 82
Cdd:COG1178   12 LLLLLALLLALLVLLPLLALLLRAFTDGLAnfWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPLAWLLARtdfPGRRL 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862957  83 FRPLVET-------IAAIGQTF-----PPVAVLAIAVPVIGF----GQQPAIIALILYGVLPVLQGTLAGIASVPASVLS 146
Cdd:COG1178   92 LRWLLLLplalppyVVALAWIAlfgpnGLLNTLLRALFGLEPpdiyGLGGIILVLVLFNYPYVYLLLRAALRSIDASLEE 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862957 147 VAEGMGMSSGQRLCKVELPLAAPVIIAGIRTSVIINIGTATIASTVG--ANTLGTPI---IIGLSGFNTAYIVqGAVLVA 221
Cdd:COG1178  172 AARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVLGggYTTLTTAIyqaWLGDFDLGAAAAL-ALVLLL 250

                        250
                 ....*....|....*
gi 502862957 222 LAAIVIdrLFERLAR 236
Cdd:COG1178  251 LVLLLL--LLERRLR 263
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 40-174 1.49e-04

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 42.02  E-value: 1.49e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862957  40 VYQQESFINLALAHLWLVALSSAIAVVLGVGAGIVVTRPWGReFRPLVETIAAIGQTFPPVAV-LAIAVPVIGFGQQPAI 118
Cdd:COG1177   53 LFSDPRLLDALLNSLLIALLSTLLATVLGTPAALALARYRFR-GRRLLLALLLLPLVVPGIVLgVALLLLFSALGLSGGL 131

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 502862957 119 IALIL--------YGVLPVLqgtlAGIASVPASVLSVAEGMGMSSGQRLCKVELPLAAPVIIAG 174
Cdd:COG1177  132 WGLILahvvftlpFVVLVVL----ARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAG 191
PRK10160 PRK10160
taurine ABC transporter permease TauC;
52-194 1.70e-04

taurine ABC transporter permease TauC;


Pssm-ID: 182276  Cd Length: 275  Bit Score: 41.69  E-value: 1.70e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862957  52 AHLWLVALSSAIAVVLGVGAGIVVTrpWGREFRPLVETIAAIGQTFPPVAVLAIAVPVIGFGQQPAIIALILYGVLPVLQ 131
Cdd:PRK10160  82 ASLTRIVLALLAAVVIGIPVGIAMG--LSPTVRGILDPLIELYRPVPPLAYLPLMVIWFGIGETSKILLIYLAIFAPVAM 159

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 502862957 132 GTLAGIASVPASVLSVAEGMGMSSGQRLCKVELPLAAPVIIAGIRTSVIINIGTATIASTVGA 194
Cdd:PRK10160 160 SALAGVKSAQQVRIRAAQSLGASRAQVLWFVILPGALPEILTGLRIGLGVGWSTLVAAELIAA 222
ssuC PRK11365
aliphatic sulfonate ABC transporter permease SsuC;
58-240 1.05e-03

aliphatic sulfonate ABC transporter permease SsuC;


Pssm-ID: 183100  Cd Length: 263  Bit Score: 39.53  E-value: 1.05e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862957  58 ALSSAIAVVLGVGAGIvvtRPWGREfrpLVETIAAIGQTFPPVAVLAIAVPVIGFGQQPAIIALILYGVLPVLQGTLAGI 137
Cdd:PRK11365  74 SIGGSLGLILGLISGL---SRWGER---LLDTSIQMLRNVPHLALIPLVILWFGIDESAKIFLVALGTLFPIYINTWHGI 147

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862957 138 ASVPASVLSVAEGMGMSSGQRLCKVELPLAAPVIIAGIRTSVIINIGTATIASTVGANTLgtpiiIGLSGFNTAYIVQGA 217
Cdd:PRK11365 148 RNIDRGLVEMARSYGLSGIPLFIHVILPGALPSIMVGVRFALGLMWLTLIVAETISANSG-----IGYLAMNAREFLQTD 222

                        170       180
                 ....*....|....*....|...
gi 502862957 218 VLValAAIVIDRLFERLARLLSR 240
Cdd:PRK11365 223 VVV--VAIILYALLGKLADVSAQ 243
PhnE COG3639
ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport ...
 58-238 4.71e-03

ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 442856 [Multi-domain]  Cd Length: 244  Bit Score: 37.37  E-value: 4.71e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862957  58 ALSSAIAVVLGV-GAGIVVTRPWgreFRPLVETIAAIGQTFPPVAVLAIAVPVIGFGQQPAIIALILYGVlpvlqGTLA- 135
Cdd:COG3639   65 LLGAVLALPLAFlAARNLAPNPW---VRLLARRLLNVLRAIPELVWALIFVAAVGLGPFAGVLALAIHTI-----GFLGk 136

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502862957 136 ----GIASVPASVLSVAEGMGMSSGQRLCKVELPLAAPVIIAgirTSVI---INIGTATIASTVGANTLGTPIIIGLSGF 208
Cdd:COG3639  137 lfaeAIEEIDPGPVEALRATGASRLQVIRYGVLPQVLPQFLS---YTLYrfeINIRAATVLGLVGAGGIGLLLNEAIRLF 213

                        170       180       190
                 ....*....|....*....|....*....|...
gi 502862957 209 N---TAYIVqgaVLVALAAIVIDRLFERLARLL 238
Cdd:COG3639  214 QydeVAAIL---LVILVLVLLIDLLSARLRRRL 243
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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