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Conserved domains on  [gi|502863698|ref|WP_013098674|]
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MULTISPECIES: oxidative damage protection protein [Enterobacter]

Protein Classification

oxidative damage protection protein( domain architecture ID 10012369)

oxidative damage protection protein is an Fe(2+)-trafficking protein that may act as a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK05408 PRK05408
oxidative damage protection protein; Provisional
 1-90 1.62e-58

oxidative damage protection protein; Provisional


:

Pssm-ID: 180059  Cd Length: 90  Bit Score: 173.86  E-value: 1.62e-58
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502863698  1 MARTIFCTFLQRDAEGQDFQLYPGELGKRIYNEISKEAWGQWQKKQTMLINEKKLSMMNPEHRKLLEQEMVNFLFEGKDV 80
Cdd:PRK05408  1 MARTVFCVKLGKEAEGLDFPPYPGELGKRIYENISKEAWQEWLKHQTMLINEKRLNMMDPEARKFLEEQMEKFLFGEGAV 80

                        90
                ....*....|
gi 502863698 81 HIEGYTPPEK 90
Cdd:PRK05408 81 KPEGYVPPSK 90
 
Name Accession Description Interval E-value
PRK05408 PRK05408
oxidative damage protection protein; Provisional
 1-90 1.62e-58

oxidative damage protection protein; Provisional


Pssm-ID: 180059  Cd Length: 90  Bit Score: 173.86  E-value: 1.62e-58
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502863698  1 MARTIFCTFLQRDAEGQDFQLYPGELGKRIYNEISKEAWGQWQKKQTMLINEKKLSMMNPEHRKLLEQEMVNFLFEGKDV 80
Cdd:PRK05408  1 MARTVFCVKLGKEAEGLDFPPYPGELGKRIYENISKEAWQEWLKHQTMLINEKRLNMMDPEARKFLEEQMEKFLFGEGAV 80

                        90
                ....*....|
gi 502863698 81 HIEGYTPPEK 90
Cdd:PRK05408 81 KPEGYVPPSK 90
YggX COG2924
Fe-S cluster biosynthesis and repair protein YggX [Inorganic ion transport and metabolism, ...
 1-90 9.94e-56

Fe-S cluster biosynthesis and repair protein YggX [Inorganic ion transport and metabolism, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 442168  Cd Length: 90  Bit Score: 166.89  E-value: 9.94e-56
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502863698  1 MARTIFCTFLQRDAEGQDFQLYPGELGKRIYNEISKEAWGQWQKKQTMLINEKKLSMMNPEHRKLLEQEMVNFLFEGKDV 80
Cdd:COG2924   1 MSRTVFCVKLGKEAEGLDFPPYPGELGQRIFENVSKEAWQEWLKHQTMLINEYRLNLMDPEARKFLEEQMEKFLFGEGAD 80

                        90
                ....*....|
gi 502863698 81 HIEGYTPPEK 90
Cdd:COG2924  81 KPEGYVPPSA 90
Iron_traffic pfam04362
Bacterial Fe(2+) trafficking; This is a family of bacterial Fe(2+) trafficking proteins.
 3-87 1.57e-51

Bacterial Fe(2+) trafficking; This is a family of bacterial Fe(2+) trafficking proteins.


Pssm-ID: 461275  Cd Length: 85  Bit Score: 156.16  E-value: 1.57e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502863698   3 RTIFCTFLQRDAEGQDFQLYPGELGKRIYNEISKEAWGQWQKKQTMLINEKKLSMMNPEHRKLLEQEMVNFLFEGKDVHI 82
Cdd:pfam04362  1 RTVFCVKLGKEAEGLDFPPYPGELGQRIFDNVSKEAWQEWLKHQTMLINEYRLNLMDPKARKFLEEQMEKFLFGEGAEKP 80


                 ....*
gi 502863698  83 EGYTP 87
Cdd:pfam04362 81 EGYVP 85
 
Name Accession Description Interval E-value
PRK05408 PRK05408
oxidative damage protection protein; Provisional
 1-90 1.62e-58

oxidative damage protection protein; Provisional


Pssm-ID: 180059  Cd Length: 90  Bit Score: 173.86  E-value: 1.62e-58
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502863698  1 MARTIFCTFLQRDAEGQDFQLYPGELGKRIYNEISKEAWGQWQKKQTMLINEKKLSMMNPEHRKLLEQEMVNFLFEGKDV 80
Cdd:PRK05408  1 MARTVFCVKLGKEAEGLDFPPYPGELGKRIYENISKEAWQEWLKHQTMLINEKRLNMMDPEARKFLEEQMEKFLFGEGAV 80

                        90
                ....*....|
gi 502863698 81 HIEGYTPPEK 90
Cdd:PRK05408 81 KPEGYVPPSK 90
YggX COG2924
Fe-S cluster biosynthesis and repair protein YggX [Inorganic ion transport and metabolism, ...
 1-90 9.94e-56

Fe-S cluster biosynthesis and repair protein YggX [Inorganic ion transport and metabolism, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 442168  Cd Length: 90  Bit Score: 166.89  E-value: 9.94e-56
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502863698  1 MARTIFCTFLQRDAEGQDFQLYPGELGKRIYNEISKEAWGQWQKKQTMLINEKKLSMMNPEHRKLLEQEMVNFLFEGKDV 80
Cdd:COG2924   1 MSRTVFCVKLGKEAEGLDFPPYPGELGQRIFENVSKEAWQEWLKHQTMLINEYRLNLMDPEARKFLEEQMEKFLFGEGAD 80

                        90
                ....*....|
gi 502863698 81 HIEGYTPPEK 90
Cdd:COG2924  81 KPEGYVPPSA 90
Iron_traffic pfam04362
Bacterial Fe(2+) trafficking; This is a family of bacterial Fe(2+) trafficking proteins.
 3-87 1.57e-51

Bacterial Fe(2+) trafficking; This is a family of bacterial Fe(2+) trafficking proteins.


Pssm-ID: 461275  Cd Length: 85  Bit Score: 156.16  E-value: 1.57e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502863698   3 RTIFCTFLQRDAEGQDFQLYPGELGKRIYNEISKEAWGQWQKKQTMLINEKKLSMMNPEHRKLLEQEMVNFLFEGKDVHI 82
Cdd:pfam04362  1 RTVFCVKLGKEAEGLDFPPYPGELGQRIFDNVSKEAWQEWLKHQTMLINEYRLNLMDPKARKFLEEQMEKFLFGEGAEKP 80


                 ....*
gi 502863698  83 EGYTP 87
Cdd:pfam04362 81 EGYVP 85
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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