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Conserved domains on  [gi|502949854|ref|WP_013184830|]
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DUF5347 domain-containing protein [Xenorhabdus nematophila]

Protein Classification

DUF5347 domain-containing protein( domain architecture ID 13879462)

DUF5347 domain-containing protein similar to Escherichia coli protein ORFC in retron EC67

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF5347 pfam17282
Family of unknown function (DUF5347); This family of unknown function is found in Bacteria, ...
 10-110 3.07e-52

Family of unknown function (DUF5347); This family of unknown function is found in Bacteria, mainly in Proteobacteria.


:

Pssm-ID: 435838  Cd Length: 101  Bit Score: 159.50  E-value: 3.07e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502949854   10 VVLTLDERIDGLNAAAELRHKVFSDDNSELAEFMEYMRDRTNNRVRNNERILHLIFHLAGFDKSRYDVKFNELTKNEQRA 89
Cdd:pfam17282   1 VPLPIDERIDGLNHAAKLRAEVFGDDNKELERFMDEMRDKRNNMYRDNKRFLSAIFYLANIEKERHDLKFNELTTNEQFA 80

                          90       100
                  ....*....|....*....|.
gi 502949854   90 LILAMNQFKAVASILPAKLVL 110
Cdd:pfam17282  81 LIKAINHIRAVSSILPKHLVL 101
 
Name Accession Description Interval E-value
DUF5347 pfam17282
Family of unknown function (DUF5347); This family of unknown function is found in Bacteria, ...
 10-110 3.07e-52

Family of unknown function (DUF5347); This family of unknown function is found in Bacteria, mainly in Proteobacteria.


Pssm-ID: 435838  Cd Length: 101  Bit Score: 159.50  E-value: 3.07e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502949854   10 VVLTLDERIDGLNAAAELRHKVFSDDNSELAEFMEYMRDRTNNRVRNNERILHLIFHLAGFDKSRYDVKFNELTKNEQRA 89
Cdd:pfam17282   1 VPLPIDERIDGLNHAAKLRAEVFGDDNKELERFMDEMRDKRNNMYRDNKRFLSAIFYLANIEKERHDLKFNELTTNEQFA 80

                          90       100
                  ....*....|....*....|.
gi 502949854   90 LILAMNQFKAVASILPAKLVL 110
Cdd:pfam17282  81 LIKAINHIRAVSSILPKHLVL 101
 
Name Accession Description Interval E-value
DUF5347 pfam17282
Family of unknown function (DUF5347); This family of unknown function is found in Bacteria, ...
 10-110 3.07e-52

Family of unknown function (DUF5347); This family of unknown function is found in Bacteria, mainly in Proteobacteria.


Pssm-ID: 435838  Cd Length: 101  Bit Score: 159.50  E-value: 3.07e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502949854   10 VVLTLDERIDGLNAAAELRHKVFSDDNSELAEFMEYMRDRTNNRVRNNERILHLIFHLAGFDKSRYDVKFNELTKNEQRA 89
Cdd:pfam17282   1 VPLPIDERIDGLNHAAKLRAEVFGDDNKELERFMDEMRDKRNNMYRDNKRFLSAIFYLANIEKERHDLKFNELTTNEQFA 80

                          90       100
                  ....*....|....*....|.
gi 502949854   90 LILAMNQFKAVASILPAKLVL 110
Cdd:pfam17282  81 LIKAINHIRAVSSILPKHLVL 101
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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