|
Name |
Accession |
Description |
Interval |
E-value |
| mglC |
PRK09478 |
galactose/methyl galactoside ABC transporter permease MglC; |
1-336 |
0e+00 |
|
galactose/methyl galactoside ABC transporter permease MglC;
Pssm-ID: 181892 [Multi-domain] Cd Length: 336 Bit Score: 555.84 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 1 MKAVNKKSALTWLKEGGIYVVLLVLLAIIIFQDPTFLSLMNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAA 80
Cdd:PRK09478 1 MSALNKKSFLTYLKEGGIYVVLLVLLAIIIIQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 81 VVAATLLQAMDNANKVFPHMDTVPIPLVILAVCVIGGVIGLVNGLIIAYLKVTPFITTLGTMIIVYGINSLYYDFVGASP 160
Cdd:PRK09478 81 VVAATLLQSMDNANKVFPELATMPIALVILIVCAIGAVIGLINGLIIAYLNVTPFIATLGTMIIVYGINSLYYDFVGASP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 161 IAGFDEKFSTFAQGFVRLGDFKLSYITFYAAIAVFFVWVLWNKTRFGKNIFAIGGNPEAARVSGVNVNFNLILIYALSGV 240
Cdd:PRK09478 161 ISGFDSGFSTFAQGFVALGSFRLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMIYALSGV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 241 FYAFGGMLEAGRIGSATNNLGFMYELDAIAACVVGGVSFAGGVGTVAGVVTGVLIFTVINYGLTYIGVNPYWQYIIKGGI 320
Cdd:PRK09478 241 FYAFGGMLEAGRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAI 320
|
330
....*....|....*.
gi 502968022 321 IIFAVALDSLKYARKK 336
Cdd:PRK09478 321 IIFAVALDSLKYARKK 336
|
|
| MglC |
COG4211 |
ABC-type glucose/galactose transport system, permease component [Carbohydrate transport and ... |
1-336 |
4.50e-166 |
|
ABC-type glucose/galactose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443358 Cd Length: 336 Bit Score: 465.91 E-value: 4.50e-166
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 1 MKAVNKKSALTWLKEGGIYVVLLVLLAIIIFQDPTFLSLMNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAA 80
Cdd:COG4211 1 EKKIKKKKIKNFLLNNAIYIVLLLLIIAIIIINPNFLSLRNIRNILTQSSTRMIIALGVAGLIVTQGTDLSAGRMVGLAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 81 VVAATLLQAMDNANKVFPHMDTVPIPLVILAVCVIGGVIGLVNGLIIAYLKVTPFITTLGTMIIVYGINSLYYDFVGASP 160
Cdd:COG4211 81 VISASLLQSGDYAGKFFPNLPELPIIVPILIAIAIGALFGLINGFFVAKLKVPPFIATLGTMLIVYGINSIYTDRPGAQP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 161 IAGFDEKFSTFAQGFVRLGDFKLSYITFYAAIAVFFVWVLWNKTRFGKNIFAIGGNPEAARVSGVNVNFNLILIYALSGV 240
Cdd:COG4211 161 IGGLDESFTNFAQGSINIGGFGIPYLIIYAIIVIVIMWFIWNKTKFGKNMYAVGGNPEAAEVSGVNVFKTLIIVYALAGA 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 241 FYAFGGMLEAGRIGSATNNLGFMYELDAIAACVVGGVSFAGGVGTVAGVVTGVLIFTVINYGLTYIGVNPYWQYIIKGGI 320
Cdd:COG4211 241 LYGFAGFLEAARTGSATNNYGNGYELDAIAACVVGGVSFSGGIGKISGVVIGVLIFTVINYGLTFIGVNPYWQYIIKGLI 320
|
330
....*....|....*.
gi 502968022 321 IIFAVALDSLKYARKK 336
Cdd:COG4211 321 IIAAVALDIRKYLKKK 336
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
49-328 |
7.58e-68 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 213.42 E-value: 7.58e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 49 SSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQAMdnankvfphmdTVPIPLVILAVCVIGGVIGLVNGLIIA 128
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNA-----------GLPIPLAILAALAVGALIGLLNGLLVA 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 129 YLKVTPFITTLGTMIIVYGINSLYydfVGASPIAGFDEKFSTFAQGFVRLGdfkLSYITFYAAIAVFFVWVLWNKTRFGK 208
Cdd:cd06579 70 YLRIPPFIVTLGTMFILRGLALLI---TGGRPISGLPPLFSFFLGGGLILG---IPVPVLIALAVALVAWFLLRRTRFGR 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 209 NIFAIGGNPEAARVSGVNVNFNLILIYALSGVFYAFGGMLEAGRIGSATNNLGFMYELDAIAACVVGGVSFAGGVGTVAG 288
Cdd:cd06579 144 YLYAVGGNPEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLG 223
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 502968022 289 VVTGVLIFTVINYGLTYIGVNPYWQYIIKGGIIIFAVALD 328
Cdd:cd06579 224 TLLGALLLGVLNNGLNLLGVSSFWQQIVKGAILLLAVALD 263
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
13-328 |
1.08e-36 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 135.66 E-value: 1.08e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 13 LKEGGIYVVLLVLlaIIIFQ---DPTFLSLMNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQA 89
Cdd:NF040906 2 LRQYGMLIALVAI--VVLFQiltGGILLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVN 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 90 MDnankvfphmdtVPIPLVILAVCVIGGVIGLVNGLIIAYLKVTPFITTLGTMIIVYGinsLYYDFVGASPIAGFDEKFS 169
Cdd:NF040906 80 WG-----------MPWWLAVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRG---LTLVVLGGQSIGPFPDGFQ 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 170 TFAQGFV--RLGDFKLSYITFY--AAIAVFFVWVLW-------------------------------------------- 201
Cdd:NF040906 146 KISSGFLpdLFGGTGLHLLTLLlgVLAAAALVWSQLrgrrrrikyglevepmalfiaklvliaaailfftyllasyrglp 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 202 -----------------NKTRFGKNIFAIGGNPEAARVSGVNVNFNLILIYALSGVFYAFGGMLEAGRIGSATNNLGFMY 264
Cdd:NF040906 226 nvliilgvlilvysfvtNRTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGF 305
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 502968022 265 ELDAIAACVVGGVSFAGGVGTVAGVVTGVLIFTVINYGLTYIGVNPYWQYIIKGGIIIFAVALD 328
Cdd:NF040906 306 ELDAIAACFIGGASASGGVGTVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAVAFD 369
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
41-325 |
1.50e-27 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 108.50 E-value: 1.50e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 41 NLSNILTQSSVRIIIALGVAGLI-VTQGTDLSAGRQVGLAAVVAATLLQAMDNAnkvfphmdtvpIPLVILAVCVIGGVI 119
Cdd:pfam02653 1 NILNILTLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAYVAAMLLNLLGPG-----------LWLALPVGILVGAAV 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 120 GLVNGLIIAYLKVTPFITTLGTMIIVYGINsLYYDFVGASPIAGFDEKFSTFAQGFVRLGdFKLSYITFYAAIAVFFVWV 199
Cdd:pfam02653 70 GLLIGILTLRLKINEVIITLLLNLAALGLA-LFLVTGILGGEGGTSGITGPSGFPGAFLS-FAFAFIFLLALLLVLALWL 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 200 LWNKTRFGKNIFAIGGNPEAARVSGVNVNFNLILIYALSGVFYAFGGMLEAGRIGSAT-NNLGFMYELDAIAACVVGGVS 278
Cdd:pfam02653 148 LLYRTKFGRALRAVGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPpSNFGVGLGLDAIAAVVLGGAG 227
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 502968022 279 faggvgTVAGVVTGVLIFTVIN-YGLTYIGVNPYWQYIIKGGIIIFAV 325
Cdd:pfam02653 228 ------SPIGVVIGSLIIGLVQsLGLGALGSPPELSLLVLGALLILVL 269
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| mglC |
PRK09478 |
galactose/methyl galactoside ABC transporter permease MglC; |
1-336 |
0e+00 |
|
galactose/methyl galactoside ABC transporter permease MglC;
Pssm-ID: 181892 [Multi-domain] Cd Length: 336 Bit Score: 555.84 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 1 MKAVNKKSALTWLKEGGIYVVLLVLLAIIIFQDPTFLSLMNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAA 80
Cdd:PRK09478 1 MSALNKKSFLTYLKEGGIYVVLLVLLAIIIIQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 81 VVAATLLQAMDNANKVFPHMDTVPIPLVILAVCVIGGVIGLVNGLIIAYLKVTPFITTLGTMIIVYGINSLYYDFVGASP 160
Cdd:PRK09478 81 VVAATLLQSMDNANKVFPELATMPIALVILIVCAIGAVIGLINGLIIAYLNVTPFIATLGTMIIVYGINSLYYDFVGASP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 161 IAGFDEKFSTFAQGFVRLGDFKLSYITFYAAIAVFFVWVLWNKTRFGKNIFAIGGNPEAARVSGVNVNFNLILIYALSGV 240
Cdd:PRK09478 161 ISGFDSGFSTFAQGFVALGSFRLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMIYALSGV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 241 FYAFGGMLEAGRIGSATNNLGFMYELDAIAACVVGGVSFAGGVGTVAGVVTGVLIFTVINYGLTYIGVNPYWQYIIKGGI 320
Cdd:PRK09478 241 FYAFGGMLEAGRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAI 320
|
330
....*....|....*.
gi 502968022 321 IIFAVALDSLKYARKK 336
Cdd:PRK09478 321 IIFAVALDSLKYARKK 336
|
|
| MglC |
COG4211 |
ABC-type glucose/galactose transport system, permease component [Carbohydrate transport and ... |
1-336 |
4.50e-166 |
|
ABC-type glucose/galactose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443358 Cd Length: 336 Bit Score: 465.91 E-value: 4.50e-166
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 1 MKAVNKKSALTWLKEGGIYVVLLVLLAIIIFQDPTFLSLMNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAA 80
Cdd:COG4211 1 EKKIKKKKIKNFLLNNAIYIVLLLLIIAIIIINPNFLSLRNIRNILTQSSTRMIIALGVAGLIVTQGTDLSAGRMVGLAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 81 VVAATLLQAMDNANKVFPHMDTVPIPLVILAVCVIGGVIGLVNGLIIAYLKVTPFITTLGTMIIVYGINSLYYDFVGASP 160
Cdd:COG4211 81 VISASLLQSGDYAGKFFPNLPELPIIVPILIAIAIGALFGLINGFFVAKLKVPPFIATLGTMLIVYGINSIYTDRPGAQP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 161 IAGFDEKFSTFAQGFVRLGDFKLSYITFYAAIAVFFVWVLWNKTRFGKNIFAIGGNPEAARVSGVNVNFNLILIYALSGV 240
Cdd:COG4211 161 IGGLDESFTNFAQGSINIGGFGIPYLIIYAIIVIVIMWFIWNKTKFGKNMYAVGGNPEAAEVSGVNVFKTLIIVYALAGA 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 241 FYAFGGMLEAGRIGSATNNLGFMYELDAIAACVVGGVSFAGGVGTVAGVVTGVLIFTVINYGLTYIGVNPYWQYIIKGGI 320
Cdd:COG4211 241 LYGFAGFLEAARTGSATNNYGNGYELDAIAACVVGGVSFSGGIGKISGVVIGVLIFTVINYGLTFIGVNPYWQYIIKGLI 320
|
330
....*....|....*.
gi 502968022 321 IIFAVALDSLKYARKK 336
Cdd:COG4211 321 IIAAVALDIRKYLKKK 336
|
|
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
12-336 |
5.27e-83 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 254.26 E-value: 5.27e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 12 WLKEGGIYVVLLVLLAIIIFQDPTFLSLMNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQAMD 91
Cdd:COG1172 15 LLPELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVVAALLLVALG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 92 nankvfphmdtVPIPLVILAVCVIGGVIGLVNGLIIAYLKVTPFITTLGTMIIVYGINSLYydfVGASPIAGFDEKFSTF 171
Cdd:COG1172 95 -----------LPILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLL---TGGRPISGLPDAFRAL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 172 AQGFVrlgdFKLSYITFYAAIAVFFVWVLWNKTRFGKNIFAIGGNPEAARVSGVNVNFNLILIYALSGVFYAFGGMLEAG 251
Cdd:COG1172 161 GQGSL----LGIPVPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAA 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 252 RIGSATNNLGFMYELDAIAACVVGGVSFAGGVGTVAGVVTGVLIFTVINYGLTYIGVNPYWQYIIKGGIIIFAVALDSLK 331
Cdd:COG1172 237 RLGSAQPNAGSGYELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLR 316
|
....*
gi 502968022 332 YARKK 336
Cdd:COG1172 317 RRRRA 321
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
49-328 |
7.58e-68 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 213.42 E-value: 7.58e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 49 SSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQAMdnankvfphmdTVPIPLVILAVCVIGGVIGLVNGLIIA 128
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNA-----------GLPIPLAILAALAVGALIGLLNGLLVA 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 129 YLKVTPFITTLGTMIIVYGINSLYydfVGASPIAGFDEKFSTFAQGFVRLGdfkLSYITFYAAIAVFFVWVLWNKTRFGK 208
Cdd:cd06579 70 YLRIPPFIVTLGTMFILRGLALLI---TGGRPISGLPPLFSFFLGGGLILG---IPVPVLIALAVALVAWFLLRRTRFGR 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 209 NIFAIGGNPEAARVSGVNVNFNLILIYALSGVFYAFGGMLEAGRIGSATNNLGFMYELDAIAACVVGGVSFAGGVGTVAG 288
Cdd:cd06579 144 YLYAVGGNPEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLG 223
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 502968022 289 VVTGVLIFTVINYGLTYIGVNPYWQYIIKGGIIIFAVALD 328
Cdd:cd06579 224 TLLGALLLGVLNNGLNLLGVSSFWQQIVKGAILLLAVALD 263
|
|
| COG4158 |
COG4158 |
Predicted ABC-type sugar transport system, permease component [General function prediction ... |
2-331 |
1.23e-57 |
|
Predicted ABC-type sugar transport system, permease component [General function prediction only];
Pssm-ID: 443324 Cd Length: 334 Bit Score: 189.37 E-value: 1.23e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 2 KAVNKKSALTWLKEGGIYVVLLVLLAIIIFQDPTFLSLMNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAV 81
Cdd:COG4158 16 AAARRFRLRSLLQAVGMLPVLILLCIGFELLTPNFLTVQNLSNIARQASINIVLAAGMTFVILTGGIDLSVGSILAASAV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 82 VAAtllqamdnankvfpHMDTVPIP--LVILAVCVIGGVIGLVNGLIIAYLKVTPFITTLGTMIIVYGINSLyydFVGAS 159
Cdd:COG4158 96 VAV--------------LVSLLPGLglLGIPAALLVGLLFGLINGLLIAFLKLPPFIVTLGSLTALRGAARL---LANGT 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 160 PIAGFDEKFSTFAQGFVrlgdFKLSYITFYAAIAVFFVWVLWNKTRFGKNIFAIGGNPEAARVSGVNVNFNLILIYALSG 239
Cdd:COG4158 159 TVFNPDLPFAWIGNGYL----LGIPWLVVIALAVVLASWFILRRTVLGVHIYAVGGNAQAARLTGIKVWRVLLFVYAVSG 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 240 VFYAFGGMLEAGRIGSAT-NNLGFMYELDAIAACVVGGVSFAGGVGTVAGVVTGVLIFTVINYGLTYIGVNPYWQYIIKG 318
Cdd:COG4158 235 LLAGLGGVMSAARLYAANgLQLGQGYELDAIAAVILGGTSFVGGIGSIWGTLIGALIIAVLNNGLILLGVSDFWQFIIKG 314
|
330
....*....|...
gi 502968022 319 GIIIFAVALDSLK 331
Cdd:COG4158 315 LVIIIAVALDRYR 327
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
12-328 |
1.07e-52 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 176.06 E-value: 1.07e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 12 WLKEGGIYVVLLVLLAIIIFQDPTFLSLMNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLqAMD 91
Cdd:PRK09512 15 WLIEQKSLIALLVLIAIVSTLSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIV-GIE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 92 nankvfphmdtVPIPLVILAVCVIGGVIGLVNGLIIAYLKVTPFITTLGTMIIVYGINSLYYDfvgASPI-AGFDEK--- 167
Cdd:PRK09512 94 -----------VNALVAVPAALALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTD---GSPInTGFTDNadl 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 168 FSTFAQGFVrlgdFKLSYITFYAAIAVFFVWVLWNKTRFGKNIFAIGGNPEAARVSGVNVNFNLILIYALSGVFYAFGGM 247
Cdd:PRK09512 160 FGWFGIGRP----LGIPTPVWIMAIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGI 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 248 LEAGRIGSATNNLGFMYELDAIAACVVGGVSFAGGVGTVAGVVTGVLIFTVINYGLTYIGVNPYWQYIIKGGIIIFAVAL 327
Cdd:PRK09512 236 IEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLV 315
|
.
gi 502968022 328 D 328
Cdd:PRK09512 316 D 316
|
|
| PRK09699 |
PRK09699 |
D-allose ABC transporter permease; |
9-330 |
3.23e-45 |
|
D-allose ABC transporter permease;
Pssm-ID: 182035 [Multi-domain] Cd Length: 312 Bit Score: 156.47 E-value: 3.23e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 9 ALTWLKEGGIYVVLLVLLAIIIFQDPTFLSLMNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQ 88
Cdd:PRK09699 6 ALFWDKYGTFFILAIIVAIFGSLSPEYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKLML 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 89 AMDNankvfphmdtvPIPLVILAVCVIGGVIGLVNGLIIAYLKVTPFITTLGTMIIVYGINSLYYDfvgASPIAGFDEKF 168
Cdd:PRK09699 86 AGVD-----------PFLAALIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISD---ANSVYGFSFDF 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 169 STFAQGFVrlgdFKLSYITFYAAIAVFFVWVLWNKTRFGKNIFAIGGNPEAARVSGVNVNFNLILIYALSGVFYAFGGML 248
Cdd:PRK09699 152 VNFFAASV----IGIPVPVIFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVV 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 249 EAGRIGSATNNLGFMYELDAIAACVVGGVSFAGGVGTVAGVVTGVLIFTVINYGLTYIGVNPYWQYIIKGGIIIFAVALD 328
Cdd:PRK09699 228 STARLGAAEPLAGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALD 307
|
..
gi 502968022 329 SL 330
Cdd:PRK09699 308 RL 309
|
|
| araH |
PRK11285 |
L-arabinose transporter permease protein; Provisional |
17-336 |
4.51e-43 |
|
L-arabinose transporter permease protein; Provisional
Pssm-ID: 183076 [Multi-domain] Cd Length: 333 Bit Score: 151.37 E-value: 4.51e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 17 GIYVVLLVLLAIIIFQDPTFLSLMNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQAMDNankv 96
Cdd:PRK11285 31 GMLVVFAVLFIACSLFVPNFASFINMKGLGLAISMIGMVACTMLFCLASGDFDLSVASVVAFAGVVTAVVINATES---- 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 97 fphmdtvpIPLVILAVCVIGGVIGLVNGLIIAYLKVTPFITTLGTMIIVYGinsLYYDFVGASPIAGFDEKFstFAQGFV 176
Cdd:PRK11285 107 --------LWLGVAAGLLLGAAVGLVNGFVIARLKINALITTLATMQIVRG---LAYIISDGKAVGISDERF--FALGYA 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 177 RLgdFKLSYITFYAAIAVFFVWVLWNKTRFGKNIFAIGGNPEAARVSGVNVNFNLILIYALSGVFYAFGGMLEAGRIGSA 256
Cdd:PRK11285 174 NF--FGVPAPIWLTVACFVVFGFLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLQGLVSALAGVILASRMTSG 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 257 TNNLGFMYELDAIAACVVGGVSFAGGVGTVAGVVTGVLIFTVINYGLTYIGVNPYWQYIIKGGIIIFAVALDSLKYARKK 336
Cdd:PRK11285 252 QPMTSIGFELIVISACVLGGVSLKGGIAKISGVVAGVLILGTVENAMNLLNISPFYQYVVRGLILLAAVLFDRYKQRAKR 331
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
13-328 |
1.08e-36 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 135.66 E-value: 1.08e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 13 LKEGGIYVVLLVLlaIIIFQ---DPTFLSLMNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQA 89
Cdd:NF040906 2 LRQYGMLIALVAI--VVLFQiltGGILLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVN 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 90 MDnankvfphmdtVPIPLVILAVCVIGGVIGLVNGLIIAYLKVTPFITTLGTMIIVYGinsLYYDFVGASPIAGFDEKFS 169
Cdd:NF040906 80 WG-----------MPWWLAVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRG---LTLVVLGGQSIGPFPDGFQ 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 170 TFAQGFV--RLGDFKLSYITFY--AAIAVFFVWVLW-------------------------------------------- 201
Cdd:NF040906 146 KISSGFLpdLFGGTGLHLLTLLlgVLAAAALVWSQLrgrrrrikyglevepmalfiaklvliaaailfftyllasyrglp 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 202 -----------------NKTRFGKNIFAIGGNPEAARVSGVNVNFNLILIYALSGVFYAFGGMLEAGRIGSATNNLGFMY 264
Cdd:NF040906 226 nvliilgvlilvysfvtNRTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGF 305
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 502968022 265 ELDAIAACVVGGVSFAGGVGTVAGVVTGVLIFTVINYGLTYIGVNPYWQYIIKGGIIIFAVALD 328
Cdd:NF040906 306 ELDAIAACFIGGASASGGVGTVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAVAFD 369
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
41-325 |
1.50e-27 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 108.50 E-value: 1.50e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 41 NLSNILTQSSVRIIIALGVAGLI-VTQGTDLSAGRQVGLAAVVAATLLQAMDNAnkvfphmdtvpIPLVILAVCVIGGVI 119
Cdd:pfam02653 1 NILNILTLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAYVAAMLLNLLGPG-----------LWLALPVGILVGAAV 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 120 GLVNGLIIAYLKVTPFITTLGTMIIVYGINsLYYDFVGASPIAGFDEKFSTFAQGFVRLGdFKLSYITFYAAIAVFFVWV 199
Cdd:pfam02653 70 GLLIGILTLRLKINEVIITLLLNLAALGLA-LFLVTGILGGEGGTSGITGPSGFPGAFLS-FAFAFIFLLALLLVLALWL 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 200 LWNKTRFGKNIFAIGGNPEAARVSGVNVNFNLILIYALSGVFYAFGGMLEAGRIGSAT-NNLGFMYELDAIAACVVGGVS 278
Cdd:pfam02653 148 LLYRTKFGRALRAVGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPpSNFGVGLGLDAIAAVVLGGAG 227
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 502968022 279 faggvgTVAGVVTGVLIFTVIN-YGLTYIGVNPYWQYIIKGGIIIFAV 325
Cdd:pfam02653 228 ------SPIGVVIGSLIIGLVQsLGLGALGSPPELSLLVLGALLILVL 269
|
|
| PRK15432 |
PRK15432 |
autoinducer 2 ABC transporter permease LsrC; Provisional |
14-328 |
8.00e-27 |
|
autoinducer 2 ABC transporter permease LsrC; Provisional
Pssm-ID: 185330 [Multi-domain] Cd Length: 344 Bit Score: 108.28 E-value: 8.00e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 14 KEGGIYVVLLVLLAIIIFQDPTFLSLMNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQAmdna 93
Cdd:PRK15432 9 RELTALLAIVLLFVLLGFLDRQYLSLQTLTMVFSSAQILILLAIGATLVMLTRNIDVSVGSITGLCAVLVGMLLNA---- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 94 nkvfphmdTVPIPLVILAVCVIGGVIGLVNGLIIAYLKVTPFITTLGTMIIVYGINSLYydfVGASPIAGFDEKFSTFAQ 173
Cdd:PRK15432 85 --------GYSLPVACLATLLLGLLAGFFNGVLVAWLRIPAIVATLGTLGLYRGIMLLW---TGGKWIEGLPAELKQLSA 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 174 GFVrlgdFKLSYITFYAAIAVFFVWVLWNKTRFGKNIFAIGGNPEAARVSGVNVNFNLILIYALSGVFYAFGGMLEAGRI 253
Cdd:PRK15432 154 PIL----LGISPIGWLTLILILAMAWLLAKTAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQI 229
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 502968022 254 GSATNNLGFMYELDAIAACVVGGVSFAGGVGTVAGVVTGVLIFTVINYGLTYIGVNPYWQYIIKGGIIIFAVALD 328
Cdd:PRK15432 230 GFIPNQTGTGLEMKAIAACVLGGISLLGGSGTIIGAVLGAYFLTQIDSVLVLLRIPAWWNDFIAGLVLLGVLVFD 304
|
|
| PRK11618 |
PRK11618 |
inner membrane ABC transporter permease protein YjfF; Provisional |
20-276 |
9.17e-25 |
|
inner membrane ABC transporter permease protein YjfF; Provisional
Pssm-ID: 183235 [Multi-domain] Cd Length: 317 Bit Score: 101.95 E-value: 9.17e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 20 VVLLVLLAIIIFQDPTFLSLMNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQAMDnankvfph 99
Cdd:PRK11618 13 GVFVLGYLFCLVQFPGFASTRVICNLLTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKLIGDYG-------- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 100 mdtVPIPLVILAVCVIGGVIGLVNGLIIAYLKVTPFITTLGTMIIVYGINSLyydfVGASPIAGFDEKFSTFAQGFVRL- 178
Cdd:PRK11618 85 ---WSPLLAFPLVLVMGAAFGAFMGALIHYLKLPAFIVTLAGMFLARGVSFL----VSEESIPINHPFYDTLSSLAWKLp 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 179 GDFKLSYITFYAAIAVFFVWVLWNKTRFGKNIFAIGGNPEAARVSGVNVNFNLILIYALSGVFYAFGGMLEAGRIGSATN 258
Cdd:PRK11618 158 GGGRLSAMALIMLAVVAIGIFLAHRTRFGNNVYAIGGNATSANLMGIPVRRTTIRIYMLSGFLATLAGIVFSLYTSAGYA 237
|
250
....*....|....*...
gi 502968022 259 NLGFMYELDAIAACVVGG 276
Cdd:PRK11618 238 LAAVGVELDAIAAVVIGG 255
|
|
| PRK15038 |
PRK15038 |
autoinducer 2 ABC transporter permease LsrD; |
54-334 |
9.47e-25 |
|
autoinducer 2 ABC transporter permease LsrD;
Pssm-ID: 184998 Cd Length: 330 Bit Score: 102.22 E-value: 9.47e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 54 IIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQAmdnankvfphmdTVPIPLVILAVCVIGGVIGLVNGLIIAYLKVT 133
Cdd:PRK15038 47 IVALPLTMVIVSGGIDISFGSTIGLCAIALGVLFQS------------GVPMPLAILLTLLLGALCGLINAGLIIYTGVN 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 134 PFITTLGTMIIVYGINSLYYDFVGASP---IAGFDEKFSTFAQgfvrLGDFKLSYITFYAAIAVFFVWVLWNKTRFGKNI 210
Cdd:PRK15038 115 PLVITLGTLYLFGGSALLLSGMAGATGyegIGGFPMAFTDFAN----LDVLGLPVPLIIFLICLLVFWLLMHRTHAGRNV 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 211 FAIGGNPEAARVSGVNVNFNLILIYALSGVFYAFGGMLEAGRIGSATNNLGFMYELDAIAACVVGGVSFAGGVGTVAGVV 290
Cdd:PRK15038 191 FLIGQSPRVALYSAIPVNRTLCALYAMTGLASAIAAVLLVSYFGSARSDLGASFLMPAITAVVLGGANIYGGSGSIIGTA 270
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 502968022 291 TGVLIFTVINYGLTYIGVNPYWQYIIKGGIIIFAVALDSLKYAR 334
Cdd:PRK15038 271 LAVLLVGYLQQGLQMAGVPNQISSALSGALLIVVVVGRSVSLHR 314
|
|
| TM_PBP1_branched-chain-AA_like |
cd06574 |
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette ... |
49-325 |
3.29e-19 |
|
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.
Pssm-ID: 119320 [Multi-domain] Cd Length: 266 Bit Score: 85.79 E-value: 3.29e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 49 SSVRIIIALGVAGLIVTQG-TDLSAGRQVGLAAVVAATLLqamdnankvfphMDTVPIPLVILAVCVIGGVIGLVNGLII 127
Cdd:cd06574 1 GLIYAILALGVYIVFRILGfPDLTVDGSFPLGAAVAAILI------------VAGYNPWLALIAAILAGAAAGLVTGFLH 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 128 AYLKVTPFITTLGTMIIVYGINSLYYdfvGASPIAGFDEKFS-TFAQGFVRLGDFKLSYITFYAAIAVFFVWVLWNKTRF 206
Cdd:cd06574 69 TRLKINGLLAGILIMIGLYSINLRIM---GGPNIPLGTRDTLlGLLLLFGISGTLSIPVVLLLIVLLVLFLVIWFLRTKL 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 207 GKNIFAIGGNPEAARVSGVNVNFNLILIYALSGVFYAFGGMLEAGRIGSATNNLGFMYELDAIAACVVGGVSFAGGVGTV 286
Cdd:cd06574 146 GLAMRATGDNPDMARSLGINVDRTRILGLVISNALAALGGALYAQYQGFADVNMGIGTGVIGLAAVIIGGAIVGRRTIKA 225
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 502968022 287 AGVVTGV--LIFTVINYGLTYIGVNPYWQYIIKGGIIIFAV 325
Cdd:cd06574 226 SILGVIIgaILYRIALALALGSGLIPSDLKLITAGVIVLVL 266
|
|
| NupP |
COG4603 |
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and ... |
1-276 |
1.57e-14 |
|
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and metabolism];
Pssm-ID: 443653 [Multi-domain] Cd Length: 356 Bit Score: 73.62 E-value: 1.57e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 1 MKAVNKKSALTWLKEGGIyVVLLVLLAIIIF--------QDP----------TFLSLMNLSNILTQSSVRIIIALGVA-- 60
Cdd:COG4603 1 MSRLRLERRLLRLRSLLI-PLLAVLLALLVGallillagANPleaysalfqgAFGSPYGLGETLVKATPLILTGLAVAva 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 61 ---GL--IVTQGtdlsagrQVGLAAVVAATLLQAMDNANKVfphmdtVPIPLVILAVCVIGGVIGLVNGLIIAYLKVTPF 135
Cdd:COG4603 80 fraGLfnIGAEG-------QLYLGALAAAAVGLALPGLPGP------LHLPLALLAGALAGALWAAIPGLLKARFGVNEV 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 136 ITTL-----GTMIIVYGINSLYYDFVGASPIAgfdEKFSTFAQGFVRLGDFKLSYITFYAAIAVFFVWVLWNKTRFGKNI 210
Cdd:COG4603 147 ITTLmlnyiALYLVNYLVRGPLRDPGSGFPQT---PPIPESARLPRLLPGTRLHLGLLIALLAAVLVWVLLNRTTLGYEL 223
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 502968022 211 FAIGGNPEAARVSGVNVNFNLILIYALSGVFYAFGGMLE-AGRIGSATNNLGFMYELDAIAACVVGG 276
Cdd:COG4603 224 RAVGLNPRAARYAGINVKRLIVLAMLISGALAGLAGAVEvLGVQGRLTPGFSPGYGFTGIAVALLGR 290
|
|
| TM_PBP1_transp_TpRbsC_like |
cd06580 |
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. ... |
102-276 |
7.30e-13 |
|
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Pssm-ID: 119322 [Multi-domain] Cd Length: 234 Bit Score: 67.08 E-value: 7.30e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 102 TVPIPLVILAVCVIGGVIGLVNGLIIAYLKVTPFITTLGTMIIVYGInslyydfvgaspiagfdekfstfaqgfvrlgdf 181
Cdd:cd06580 47 TGSLPLGLLAAALAGALWALLPALLKAKLGVNEVISGLMLNYIALGL--------------------------------- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 182 kLSYITFYAAIAVFFVWVLWNKTRFGKNIFAIGGNPEAARVSGVNVNFNLILIYALSGVFYAFGGMLE-AGRIGSATNNL 260
Cdd:cd06580 94 -TSYLLLLALLLVILVWLLLYRTRFGLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGLAGAYLvLGVQGRFTEGM 172
|
170
....*....|....*.
gi 502968022 261 GFMYELDAIAACVVGG 276
Cdd:cd06580 173 SAGYGFIAIAVALLGR 188
|
|
| LivH |
COG0559 |
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ... |
78-277 |
9.87e-13 |
|
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440325 [Multi-domain] Cd Length: 290 Bit Score: 67.40 E-value: 9.87e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 78 LAAVVAATLLQAMDnankvfphmdtVPIPLVILAVCVIGGVIG-LVNGLIIAYLK----VTPFITTLGTMIIVYGINSLY 152
Cdd:COG0559 45 LGAYVAYTLATLLG-----------LPLWLALLLAVLVAALLGvLLERLVIRPLRgappLALLLATIGLSLVLQGLVLLI 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 153 YdfvGASPIAgfdekFSTFAQGFVRLGDFKLSYITFY----AAIAVFFVWVLWNKTRFGKNIFAIGGNPEAARVSGVNVN 228
Cdd:COG0559 114 F---GADPRS-----FPALLSGSVELGGVSIPAYRLFiivvALVLLAALWLFLRRTRLGLAMRAVAQNREAARLMGINVD 185
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 502968022 229 FNLILIYALSGVFYAFGGMLeAGRIGSATNNLGFMYELDAIAACVVGGV 277
Cdd:COG0559 186 RVIALTFALGAALAGLAGVL-LAPIYSVSPTMGFLLGLKAFAAVVLGGL 233
|
|
| TM_PBP1_LivM_like |
cd06581 |
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ... |
103-277 |
2.66e-12 |
|
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119323 [Multi-domain] Cd Length: 268 Bit Score: 65.93 E-value: 2.66e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 103 VPIPLVILAVCVIGGVIGLVNGLIIAYLKVTPF-ITTLGTMIIVYGINSLYYDFVGASpiAGFDEKFSTFAQGFVRLGDF 181
Cdd:cd06581 45 LPFWLALLAAGLVAALVGLLLGLPALRLRGVYFaIATLAFAEIVRLLALNWSSLTGGS--NGLSGIPPPLLGGLLLSSPL 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 182 KLSYITFYAAIAVFFVWVLWNKTRFGKNIFAIGGNPEAARVSGVNVNFNLILIYALSGVFYAFGGMLEAGRIGSAT-NNL 260
Cdd:cd06581 123 AFYYLVLAVLLLVLLLLRRLVRSPFGRALRAIRENEVAAEALGINVTRYKLLAFALSAALAGLAGALYAHYLGFVSpESF 202
|
170
....*....|....*..
gi 502968022 261 GFMYELDAIAACVVGGV 277
Cdd:cd06581 203 GFALSIELLLMVVLGGL 219
|
|
| TM_PBP1_LivH_like |
cd06582 |
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ... |
103-277 |
2.98e-11 |
|
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119324 [Multi-domain] Cd Length: 272 Bit Score: 62.83 E-value: 2.98e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 103 VPIPLVILAVCVIGGVIG-LVNGLIIAYLKVTPFITTLGTMIIVYGINSLYYDFVGASPIAGFdekfSTFAQGFVRLGDF 181
Cdd:cd06582 49 LPFWLALLLALLVAALLGvLLERLVLRPLRGAPLLTLLITFGGLLILLQGLLLIFGGDPRVPP----PPLLSGSVELGGV 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 182 KLSYITFY----AAIAVFFVWVLWNKTRFGKNIFAIGGNPEAARVSGVNVNFNLILIYALSGVFYAFGGMLeAGRIGSAT 257
Cdd:cd06582 125 TIPPYRLFiiavALVLLAALYLFLRRTRLGRAIRAVAQNPEAARLLGINVRRVFALTFALGAALAGLAGVL-LAPITGVS 203
|
170 180
....*....|....*....|
gi 502968022 258 NNLGFMYELDAIAACVVGGV 277
Cdd:cd06582 204 PTMGLLLLLKAFAAVVLGGL 223
|
|
| LivM |
COG4177 |
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport ... |
103-277 |
3.16e-11 |
|
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443336 [Multi-domain] Cd Length: 285 Bit Score: 63.18 E-value: 3.16e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 103 VPIPLVILAVCVIGGVIGLVNGLIIAYLKVTPF-ITTLGTMIIVYGINSLYYDFV-GASPIAGFDekfSTFAQGFVRLGD 180
Cdd:COG4177 55 LPFWLALLLAGLVAALLGLLIGLPALRLRGDYLaIATLAFAEIVRLLALNLESLTgGADGLSGIP---RPTLFGLDLGSP 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 181 FKLSYITFYAAIAVFFVWVLWNKTRFGKNIFAIGGNPEAARVSGVNVNFNLILIYALSGVFYAFGGMLEAGRIGSAT-NN 259
Cdd:COG4177 132 LAFYYLVLALLVLVLLLLRRLVRSRFGRALRAIRENEIAAEALGINVTRYKLLAFVLSAALAGLAGALYAHYVGFVSpES 211
|
170
....*....|....*...
gi 502968022 260 LGFMYELDAIAACVVGGV 277
Cdd:COG4177 212 FSFLLSIEILLMVVLGGL 229
|
|
| NupQ |
COG1079 |
ABC-type guanosine uptake system NupNOPQ, permease subunit NupQ [Nucleotide transport and ... |
109-276 |
5.67e-08 |
|
ABC-type guanosine uptake system NupNOPQ, permease subunit NupQ [Nucleotide transport and metabolism];
Pssm-ID: 440697 [Multi-domain] Cd Length: 309 Bit Score: 53.53 E-value: 5.67e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 109 ILAVCVIGGVIGLVNGLIIAYLKVTPFITTLGTMIIVYGINS-LYYDFVGASPIAGFDEKFSTFAQGFVR----LGD--F 181
Cdd:COG1079 66 LLAAALAGALLALLHAFLTITLRANQIVSGLALNLLALGLTAfLGRLLFGQGGQTPSIPGLPPIPIPGLSdipvLGPllF 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502968022 182 KLSYITFYAAIAVFFVWVLWNKTRFGKNIFAIGGNPEAARVSGVNVNFNLILIYALSGVFYAFGGM-LEAGRIGSATNNL 260
Cdd:COG1079 146 GQSPLVYLALLLVPLVWWVLYRTRFGLRLRAVGENPAAADALGINVYRIRYLAVLIGGALAGLGGAyLSLGYVGSFTEGM 225
|
170 180
....*....|....*....|
gi 502968022 261 ----GFMyeldAIAACVVGG 276
Cdd:COG1079 226 tagrGFI----ALAAVIFGR 241
|
|
| |
