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Conserved domains on  [gi|503096841|ref|WP_013331651|]
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formate dehydrogenase subunit delta [Halomonas elongata]

Protein Classification

formate dehydrogenase subunit delta( domain architecture ID 10568441)

NAD-dependent formate dehydrogenase (FDH) subunit delta is part of a heteromeric FDH that catalyzes the irreversible oxidation of formate to CO(2) with concomitant reduction of NAD(+) to NADH

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FdsD pfam11390
NADH-dependant formate dehydrogenase delta subunit FdsD; FdsD is the delta subunit of the ...
 9-65 1.30e-19

NADH-dependant formate dehydrogenase delta subunit FdsD; FdsD is the delta subunit of the enzyme formate dehydrogenase. This subunit may play a role in maintaining the quaternary structure by means of electrostatic interactions with the other subunits. The delta subunit is not involved in the active centre of the enzyme.


:

Pssm-ID: 431862  Cd Length: 60  Bit Score: 74.10  E-value: 1.30e-19
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 503096841   9 LIHMANQIATNLQSSND--AATGVRNHLEKFWARSMKERLIGCLDDADCDLNPIARQAV 65
Cdd:pfam11390  2 LIRMANQIAAFFESQPDdeAVAGVADHIKKFWEPRMRRALLAHLAAGGAGLDPLVREAV 60
 
Name Accession Description Interval E-value
FdsD pfam11390
NADH-dependant formate dehydrogenase delta subunit FdsD; FdsD is the delta subunit of the ...
 9-65 1.30e-19

NADH-dependant formate dehydrogenase delta subunit FdsD; FdsD is the delta subunit of the enzyme formate dehydrogenase. This subunit may play a role in maintaining the quaternary structure by means of electrostatic interactions with the other subunits. The delta subunit is not involved in the active centre of the enzyme.


Pssm-ID: 431862  Cd Length: 60  Bit Score: 74.10  E-value: 1.30e-19
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 503096841   9 LIHMANQIATNLQSSND--AATGVRNHLEKFWARSMKERLIGCLDDADCDLNPIARQAV 65
Cdd:pfam11390  2 LIRMANQIAAFFESQPDdeAVAGVADHIKKFWEPRMRRALLAHLAAGGAGLDPLVREAV 60
 
Name Accession Description Interval E-value
FdsD pfam11390
NADH-dependant formate dehydrogenase delta subunit FdsD; FdsD is the delta subunit of the ...
 9-65 1.30e-19

NADH-dependant formate dehydrogenase delta subunit FdsD; FdsD is the delta subunit of the enzyme formate dehydrogenase. This subunit may play a role in maintaining the quaternary structure by means of electrostatic interactions with the other subunits. The delta subunit is not involved in the active centre of the enzyme.


Pssm-ID: 431862  Cd Length: 60  Bit Score: 74.10  E-value: 1.30e-19
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 503096841   9 LIHMANQIATNLQSSND--AATGVRNHLEKFWARSMKERLIGCLDDADCDLNPIARQAV 65
Cdd:pfam11390  2 LIRMANQIAAFFESQPDdeAVAGVADHIKKFWEPRMRRALLAHLAAGGAGLDPLVREAV 60
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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