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Conserved domains on  [gi|503231273|ref|WP_013465934|]
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MULTISPECIES: pilin [Pseudoalteromonas]

Protein Classification

pilin; pilin; type II secretion system GspH family protein( domain architecture ID 11471942)

pilin similar to Pseudomonas aeruginosa fimbrial protein PilA, which is responsible for the adhesive property of the pilus; pilin similar to Pseudomonas aeruginosa fimbrial protein PilA, which is responsible for the adhesive property of the pilus; pilin similar to fimbrial protein PilA, which is responsible for the adhesive property of the pilus; pilin similar to fimbrial protein PilE, which is required for pilus biogenesis, as well as fimbrial protein PilA, which is responsible for the adhesive property of the pilus; pilin similar to Pseudomonas aeruginosa fimbrial protein PilA, which is responsible for the adhesive property of the pilus; pilin similar to Pseudomonas aeruginosa fimbrial protein PilA, which is responsible for the adhesive property of the pilus; pilin similar to fimbrial protein PilE, which is required for pilus biogenesis, as well as fimbrial protein PilA, which is responsible for the adhesive property of the pilus; pilin similar to Pseudomonas aeruginosa fimbrial protein PilA, which is responsible for the adhesive property of the pilus; pilin similar to Pseudomonas aeruginosa fimbrial protein PilA, which is responsible for the adhesive property of the pilus; pilin similar to fimbrial protein PilE, which is required for pilus biogenesis, as well as fimbrial protein PilA, which is responsible for the adhesive property of the pilus; pilin similar to Pseudomonas aeruginosa fimbrial protein PilA, which is responsible for the adhesive property of the pilus; pilin similar to fimbrial protein PilE, which is required for pilus biogenesis, as well as fimbrial protein PilA, which is responsible for the adhesive property of the pilus; pilin similar to fimbrial protein PilE, which is required for pilus biogenesis, as well as fimbrial protein PilA, which is responsible for the adhesive property of the pilus, and Acinetobacter baylyi ComP which is the major pilin (PilA-homolog) in A. bayli; pilin similar to fimbrial protein PilE, which is required for pilus biogenesis, as well as fimbrial protein PilA, which is responsible for the adhesive property of the pilus; pilin similar to Pseudomonas aeruginosa fimbrial protein PilA, which is responsible for the adhesive property of the pilus; pilin similar to fimbrial protein PilE, which is required for pilus biogenesis, as well as fimbrial protein PilA, which is responsible for the adhesive property of the pilus; pilin similar to fimbrial protein PilA, which is responsible for the adhesive property of the pilus; pilin similar to fimbrial protein PilE, which is required for pilus biogenesis, as well as fimbrial protein PilA, which is responsible for the adhesive property of the pilus; pilin similar to fimbrial protein PilA, which is responsible for the adhesive property of the pilus; pilin similar to fimbrial protein PilE, which is required for pilus biogenesis, as well as fimbrial protein PilA, which is responsible for the adhesive property of the pilus; pilin similar to fimbrial protein PilE, which is required for pilus biogenesis, as well as fimbrial protein PilA, which is responsible for the adhesive property of the pilus; pilin similar to fimbrial protein PilA, which is responsible for the adhesive property of the pilus; pilin similar to fimbrial protein PilE, which is required for pilus biogenesis, as well as fimbrial protein PilA, which is responsible for the adhesive property of the pilus; pilin similar to fimbrial protein PilE, which is required for pilus biogenesis, as well as fimbrial protein PilA, which is responsible for the adhesive property of the pilus; type II secretion system GspH family protein similar to Pseudomonas aeruginosa type II secretion system protein H that is part of the system system required for the energy-dependent secretion of extracellular factors such as proteases and toxins from the periplasm; pilin similar to fimbrial protein PilE, which is required for pilus biogenesis, as well as fimbrial protein PilA, which is responsible for the adhesive property of the pilus

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PilA COG4969
Type IV pilus assembly protein, major pilin PilA [Cell motility, Extracellular structures];
6-137 1.50e-25

Type IV pilus assembly protein, major pilin PilA [Cell motility, Extracellular structures];


:

Pssm-ID: 443995 [Multi-domain]  Cd Length: 134  Bit Score: 94.00  E-value: 1.50e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503231273   6 QQNQKGFTLIELMIVVAIIGILAAVALPAYSNYQASAKLTAGLAEISAGKTGFEV-AANSGTTPTIAEAGLQAKTANCDI 84
Cdd:COG4969    2 KKKQKGFTLIELMIVVAIIGILAAIAIPAYQDYVARARVSEALALASPLKTAVEEcALENGSLPNCNAGDNGLPATIATK 81

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 503231273  85 TVTSTTIVCAVINA-PTQIGTAAKMTWTRTSTG---AWTCATTgitaaNKDLAPKSC 137
Cdd:COG4969   82 YVSSVSVDNGVITVtGTAALAGLTLTLTPTLNNgaiTWTCSCS-----LPAKYPAGC 133
 
Name Accession Description Interval E-value
PilA COG4969
Type IV pilus assembly protein, major pilin PilA [Cell motility, Extracellular structures];
6-137 1.50e-25

Type IV pilus assembly protein, major pilin PilA [Cell motility, Extracellular structures];


Pssm-ID: 443995 [Multi-domain]  Cd Length: 134  Bit Score: 94.00  E-value: 1.50e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503231273   6 QQNQKGFTLIELMIVVAIIGILAAVALPAYSNYQASAKLTAGLAEISAGKTGFEV-AANSGTTPTIAEAGLQAKTANCDI 84
Cdd:COG4969    2 KKKQKGFTLIELMIVVAIIGILAAIAIPAYQDYVARARVSEALALASPLKTAVEEcALENGSLPNCNAGDNGLPATIATK 81

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 503231273  85 TVTSTTIVCAVINA-PTQIGTAAKMTWTRTSTG---AWTCATTgitaaNKDLAPKSC 137
Cdd:COG4969   82 YVSSVSVDNGVITVtGTAALAGLTLTLTPTLNNgaiTWTCSCS-----LPAKYPAGC 133
PRK10574 PRK10574
putative major pilin subunit; Provisional
 8-62 1.44e-13

putative major pilin subunit; Provisional


Pssm-ID: 236718 [Multi-domain]  Cd Length: 146  Bit Score: 63.13  E-value: 1.44e-13
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 503231273   8 NQKGFTLIELMIVVAIIGILAAVALPAYSNYQASAKLTAGLAEISAGKTGFEVAA 62
Cdd:PRK10574   3 KQRGFTLIELMVVIAIIAILSAIGIPAYQNYLQKAALTDMLQTFVPYKTAVELCA 57
typeII_sec_gspG TIGR01710
type II secretion system protein G; This model represents GspG, protein G of the main terminal ...
 10-77 1.48e-09

type II secretion system protein G; This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 130771 [Multi-domain]  Cd Length: 134  Bit Score: 52.43  E-value: 1.48e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 503231273   10 KGFTLIELMIVVAIIGILAAVALPAYSNYQASAKLTAGLAEISAGKTGFEV-AANSGTTPTiAEAGLQA 77
Cdd:TIGR01710   1 RGFTLLEIMVVLVILGLLAALVAPKLFSQADKAKAQVAKAQIKALKNALDMyRLDNGRYPT-EEQGLAA 68
N_methyl pfam07963
Prokaryotic N-terminal methylation motif; This short motif directs methylation of the ...
 8-32 2.11e-07

Prokaryotic N-terminal methylation motif; This short motif directs methylation of the conserved phenylalanine residue. It is most often found at the N-terminus of pilins and other proteins involved in secretion, see pfam00114, pfam05946, pfam02501 and pfam07596.


Pssm-ID: 429756 [Multi-domain]  Cd Length: 27  Bit Score: 44.29  E-value: 2.11e-07
                          10        20
                  ....*....|....*....|....*
gi 503231273    8 NQKGFTLIELMIVVAIIGILAAVAL 32
Cdd:pfam07963   3 KQRGFTLIELLVALAILAILLAAAL 27
T4P_ComGE NF041013
competence type IV pilus minor pilin ComGE;
7-39 2.52e-05

competence type IV pilus minor pilin ComGE;


Pssm-ID: 468942 [Multi-domain]  Cd Length: 83  Bit Score: 40.26  E-value: 2.52e-05
                         10        20        30
                 ....*....|....*....|....*....|...
gi 503231273   7 QNQKGFTLIELMIVVAIIGILAAVALPAYSNYQ 39
Cdd:NF041013   1 KKNKGFILLESLVALALLALIVSLLLPSLTQIQ 33
pilin_ComGC NF040999
competence type IV pilus major pilin ComGC; ComGC, encoded in the comG operon, is the major ...
 9-27 1.85e-04

competence type IV pilus major pilin ComGC; ComGC, encoded in the comG operon, is the major pilin of a type IV pilus involved in natural transformation of monoderm bacteria (those lacking an outer membrane) such as Bacillus subtilis and Streptococcus pneumoniae. In the seed alignment, Bacillus proteins have a pair of Cys residues likely to form a disulfide bond while Streptococcus proteins lack Cys residues.


Pssm-ID: 468929  Cd Length: 84  Bit Score: 37.88  E-value: 1.85e-04
                         10
                 ....*....|....*....
gi 503231273   9 QKGFTLIELMIVVAIIGIL 27
Cdd:NF040999   1 VKGFTLIEMLIVLLIISVL 19
 
Name Accession Description Interval E-value
PilA COG4969
Type IV pilus assembly protein, major pilin PilA [Cell motility, Extracellular structures];
6-137 1.50e-25

Type IV pilus assembly protein, major pilin PilA [Cell motility, Extracellular structures];


Pssm-ID: 443995 [Multi-domain]  Cd Length: 134  Bit Score: 94.00  E-value: 1.50e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503231273   6 QQNQKGFTLIELMIVVAIIGILAAVALPAYSNYQASAKLTAGLAEISAGKTGFEV-AANSGTTPTIAEAGLQAKTANCDI 84
Cdd:COG4969    2 KKKQKGFTLIELMIVVAIIGILAAIAIPAYQDYVARARVSEALALASPLKTAVEEcALENGSLPNCNAGDNGLPATIATK 81

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 503231273  85 TVTSTTIVCAVINA-PTQIGTAAKMTWTRTSTG---AWTCATTgitaaNKDLAPKSC 137
Cdd:COG4969   82 YVSSVSVDNGVITVtGTAALAGLTLTLTPTLNNgaiTWTCSCS-----LPAKYPAGC 133
PilE COG4968
Type IV pilus assembly protein PilE [Cell motility, Extracellular structures];
1-123 7.20e-19

Type IV pilus assembly protein PilE [Cell motility, Extracellular structures];


Pssm-ID: 443994 [Multi-domain]  Cd Length: 124  Bit Score: 76.65  E-value: 7.20e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503231273   1 MQTMTQQNQKGFTLIELMIVVAIIGILAAVALPAYSNYQASAKLTAGLAEISAGKTGFE--VAANSGTTPTIAEAGLQAK 78
Cdd:COG4968    1 MKKRMRRRQRGFTLIELMIVVAIIGILAAIAIPSYQDYVERARRAEAKAALLELAQAQEryYADNGSYPSALADLGLPAS 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 503231273  79 -TANCDITVTSTTiVCAVINAPTQIGTaakmTWTRTSTGAWTCATT 123
Cdd:COG4968   81 tSGYYTISIAAAA-TTYTLTATPQADG----TLTLDQTGVKTATGA 121
PulG COG2165
Type II secretory pathway, pseudopilin PulG [Cell motility, Intracellular trafficking, ...
 3-69 2.39e-15

Type II secretory pathway, pseudopilin PulG [Cell motility, Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 441768 [Multi-domain]  Cd Length: 99  Bit Score: 66.86  E-value: 2.39e-15
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 503231273   3 TMTQQNQKGFTLIELMIVVAIIGILAAVALPAYSNYQASAKLTAGLAEISAGKTGFE-VAANSGTTPT 69
Cdd:COG2165    4 RRRRRRQRGFTLIELLVVIAIIGILAALALPALQGARERARRAELRSNLRQIQQALErYRLDNGRYPS 71
PRK10574 PRK10574
putative major pilin subunit; Provisional
 8-62 1.44e-13

putative major pilin subunit; Provisional


Pssm-ID: 236718 [Multi-domain]  Cd Length: 146  Bit Score: 63.13  E-value: 1.44e-13
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 503231273   8 NQKGFTLIELMIVVAIIGILAAVALPAYSNYQASAKLTAGLAEISAGKTGFEVAA 62
Cdd:PRK10574   3 KQRGFTLIELMVVIAIIAILSAIGIPAYQNYLQKAALTDMLQTFVPYKTAVELCA 57
FimT COG4970
Type IV pilus assembly protein FimT [Cell motility, Extracellular structures];
1-53 1.61e-13

Type IV pilus assembly protein FimT [Cell motility, Extracellular structures];


Pssm-ID: 443996 [Multi-domain]  Cd Length: 73  Bit Score: 61.40  E-value: 1.61e-13
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 503231273   1 MQTMTQqNQKGFTLIELMIVVAIIGILAAVALPAYSNYQASAKLTAGLAEISA 53
Cdd:COG4970    1 MKRLRR-RQRGFTLIELLVVLAILAILAAIAVPSFSSLIARQRLRAAANELAA 52
ComGC COG4537
Competence protein ComGC [Mobilome: prophages, transposons];
5-52 1.08e-11

Competence protein ComGC [Mobilome: prophages, transposons];


Pssm-ID: 443603 [Multi-domain]  Cd Length: 108  Bit Score: 57.63  E-value: 1.08e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 503231273   5 TQQNQKGFTLIELMIVVAIIGILAAVALPAYSNYQASAKLTAGLAEIS 52
Cdd:COG4537    7 KLKKEKGFTLIEMLIVLLIISILLLIAVPNLTKQRETAQEKGCEANIK 54
typeII_sec_gspG TIGR01710
type II secretion system protein G; This model represents GspG, protein G of the main terminal ...
 10-77 1.48e-09

type II secretion system protein G; This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 130771 [Multi-domain]  Cd Length: 134  Bit Score: 52.43  E-value: 1.48e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 503231273   10 KGFTLIELMIVVAIIGILAAVALPAYSNYQASAKLTAGLAEISAGKTGFEV-AANSGTTPTiAEAGLQA 77
Cdd:TIGR01710   1 RGFTLLEIMVVLVILGLLAALVAPKLFSQADKAKAQVAKAQIKALKNALDMyRLDNGRYPT-EEQGLAA 68
N_methyl pfam07963
Prokaryotic N-terminal methylation motif; This short motif directs methylation of the ...
 8-32 2.11e-07

Prokaryotic N-terminal methylation motif; This short motif directs methylation of the conserved phenylalanine residue. It is most often found at the N-terminus of pilins and other proteins involved in secretion, see pfam00114, pfam05946, pfam02501 and pfam07596.


Pssm-ID: 429756 [Multi-domain]  Cd Length: 27  Bit Score: 44.29  E-value: 2.11e-07
                          10        20
                  ....*....|....*....|....*
gi 503231273    8 NQKGFTLIELMIVVAIIGILAAVAL 32
Cdd:pfam07963   3 KQRGFTLIELLVALAILAILLAAAL 27
Pilin pfam00114
Pilin (bacterial filament); Proteins with only the short N-terminal methylation site are not ...
 40-138 5.57e-07

Pilin (bacterial filament); Proteins with only the short N-terminal methylation site are not separated from the noise. The Prosite pattern detects those better.


Pssm-ID: 395064  Cd Length: 108  Bit Score: 45.07  E-value: 5.57e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503231273   40 ASAKLTAGLAEISAGKTGF-EVAANSGTTPTIAE--AGLQAKTANC---DITVTST---TIVCAVINAPTQIGTAAKMTW 110
Cdd:pfam00114   1 ARAQVSEALALASGLKTAVaEYALNEGSFPTAAAadIGLTSSTAILgviSVTVEGAgtgTITATFGGGGASDISGKTLTL 80

                          90       100       110
                  ....*....|....*....|....*....|.
gi 503231273  111 TRT---STGAWTCATTGItaaNKDLAPKSCP 138
Cdd:pfam00114  81 TRTandGSGSWTCGSSTV---DAKYLPSGCR 108
PilW COG4966
Type IV pilus assembly protein PilW [Cell motility, Extracellular structures];
7-51 2.26e-06

Type IV pilus assembly protein PilW [Cell motility, Extracellular structures];


Pssm-ID: 443992 [Multi-domain]  Cd Length: 158  Bit Score: 44.40  E-value: 2.26e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 503231273   7 QNQKGFTLIELMIVVAIIGILAAVALPAYSNYQASAKLTAGLAEI 51
Cdd:COG4966    2 RRQRGFTLVELMVALAIGLIVLAAVLQLFLSSRRSYRTQEALARL 46
PRK10506 PRK10506
prepilin peptidase-dependent protein;
7-44 3.14e-06

prepilin peptidase-dependent protein;


Pssm-ID: 236704 [Multi-domain]  Cd Length: 162  Bit Score: 44.21  E-value: 3.14e-06
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 503231273   7 QNQKGFTLIELMIVVAIIGILAAVALPAYSNYQASAKL 44
Cdd:PRK10506   6 KKQRGYTLIELLVVMTIVSILSAWGLYGWQRWQQRQRL 43
IV_pilin_GFxxxE TIGR02532
prepilin-type N-terminal cleavage/methylation domain; This model describes many but not all ...
 9-32 5.48e-06

prepilin-type N-terminal cleavage/methylation domain; This model describes many but not all examples of the N-terminal region of bacterial proteins that resemble type IV pilins at their N-terminus, with a cleavage site G^FxxxE followed by a hydrophobic stretch. The new N-terminal residue, usually Phe, is methylated. Separate domains of the prepilin peptidase appear responsible for cleavage and methylation. Proteins with this N-terminal region include type IV pilins and other components of pilus biogenesis, competence proteins, and type II secretion proteins. Typically several proteins in a single operon have this N-terminal domain. The N-terminal cleavage and methylation site is described by PROSITE motif PS00409 as [KRHEQSTAG]-G-[FYLIVM]-[ST]-[LT]-[LIVP]-E-[LIVMFWSTAG](14). [Cell envelope, Surface structures, Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274182 [Multi-domain]  Cd Length: 24  Bit Score: 40.37  E-value: 5.48e-06
                          10        20
                  ....*....|....*....|....
gi 503231273    9 QKGFTLIELMIVVAIIGILAAVAL 32
Cdd:TIGR02532   1 QRGFTLIELLVVLAILGILALIAL 24
T4P_ComGE NF041013
competence type IV pilus minor pilin ComGE;
7-39 2.52e-05

competence type IV pilus minor pilin ComGE;


Pssm-ID: 468942 [Multi-domain]  Cd Length: 83  Bit Score: 40.26  E-value: 2.52e-05
                         10        20        30
                 ....*....|....*....|....*....|...
gi 503231273   7 QNQKGFTLIELMIVVAIIGILAAVALPAYSNYQ 39
Cdd:NF041013   1 KKNKGFILLESLVALALLALIVSLLLPSLTQIQ 33
PulJ COG4795
Type II secretory pathway, PulJ/GspJ component [Intracellular trafficking, secretion, and ...
 3-31 4.77e-05

Type II secretory pathway, PulJ/GspJ component [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443823 [Multi-domain]  Cd Length: 118  Bit Score: 40.00  E-value: 4.77e-05
                         10        20
                 ....*....|....*....|....*....
gi 503231273   3 TMTQQNQKGFTLIELMIVVAIIGILAAVA 31
Cdd:COG4795    2 KRARRRQRGFTLLELLVALAIFALLLLAA 30
typeII_sec_gspH TIGR01708
type II secretion system protein H; This model represents GspH, protein H of the main terminal ...
 9-53 8.46e-05

type II secretion system protein H; This model represents GspH, protein H of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 130769 [Multi-domain]  Cd Length: 143  Bit Score: 39.86  E-value: 8.46e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 503231273    9 QKGFTLIELMIVVAIIGILAAVALPAYSNYQASAKLTAGLAEISA 53
Cdd:TIGR01708   3 QSGFTLIELLVVLAIMGLVAAAAALSLVSHYGTKSLDQVAGRLAA 47
pilin_ComGC NF040999
competence type IV pilus major pilin ComGC; ComGC, encoded in the comG operon, is the major ...
 9-27 1.85e-04

competence type IV pilus major pilin ComGC; ComGC, encoded in the comG operon, is the major pilin of a type IV pilus involved in natural transformation of monoderm bacteria (those lacking an outer membrane) such as Bacillus subtilis and Streptococcus pneumoniae. In the seed alignment, Bacillus proteins have a pair of Cys residues likely to form a disulfide bond while Streptococcus proteins lack Cys residues.


Pssm-ID: 468929  Cd Length: 84  Bit Score: 37.88  E-value: 1.85e-04
                         10
                 ....*....|....*....
gi 503231273   9 QKGFTLIELMIVVAIIGIL 27
Cdd:NF040999   1 VKGFTLIEMLIVLLIISVL 19
PilV COG4967
Type IV pilus assembly protein PilV [Cell motility, Extracellular structures];
1-32 2.27e-03

Type IV pilus assembly protein PilV [Cell motility, Extracellular structures];


Pssm-ID: 443993 [Multi-domain]  Cd Length: 86  Bit Score: 34.96  E-value: 2.27e-03
                         10        20        30
                 ....*....|....*....|....*....|....
gi 503231273   1 MQTMTQQNQKGFTLIELMIVVAI--IGILAAVAL 32
Cdd:COG4967    2 SRRRRRRRQRGFTLIEVLVALVIlsIGLLGLAGL 35
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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