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Conserved domains on  [gi|503245622|ref|WP_013480283|]
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class I poly(R)-hydroxyalkanoic acid synthase [Asticcacaulis excentricus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PHA_synth_I super family cl47022
poly(R)-hydroxyalkanoic acid synthase, class I; This model represents the class I subfamily of ...
141-675 0e+00

poly(R)-hydroxyalkanoic acid synthase, class I; This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. [Fatty acid and phospholipid metabolism, Biosynthesis]


The actual alignment was detected with superfamily member TIGR01838:

Pssm-ID: 481362 [Multi-domain]  Cd Length: 532  Bit Score: 754.60  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622  141 LAQNPEKVIEAQTDLMTGYMSLWAEMTRRSLG--VETPEDTTPKDKRFSDPRWQQNLVFDMMRKSYLLSSTWLNNLVSSV 218
Cdd:TIGR01838   1 LSAQPARLFEAQASYWQQQMQLWQKALLRSAGedVEPFADPEPGDRRFASPAWSSHPFFDFLKQSYLLNSSWLLELVDAV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622  219 EDVDPLHKRRAEFFTKLVTDAFSPSNFLMSNPAALDTLLSSKGESLVKGMQKFADDLARGDGKLKISQADYAHFKVGENV 298
Cdd:TIGR01838  81 EGLDPKTRRRLEFFTRQLINAMAPSNFLATNPEALRLTVETQGESLVRGMENLAEDLERGGGDLKIRQTDSSAFEVGRNL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622  299 ATTPGKVVWRGPLFELLQYNPTTDEVHETPLLIFPPWINKYYILDLQSKNSLIKWLTDQGFSVFVVSWVNPDADLKDVTF 378
Cdd:TIGR01838 161 ATTPGAVVFENELFQLIQYEPTTETVHKTPLLIVPPWINKYYILDLRPQNSLVRWLVEQGHTVFVISWRNPDASQADKTF 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622  379 EDYMFGGVYKAMSLVREQTGSPKVNTVGYCIGGTLLGVALAHMAAKGDD-SVSSATFFTAQHDFSEAGDLLLFTNEAWLK 457
Cdd:TIGR01838 241 DDYIRDGVIAALEVVEAITGEKQVNCVGYCIGGTLLSTALAYLAARGDDkRIKSATFFTTLLDFSDPGELGVFVDEEIVA 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622  458 ELERQMDaAGGVLPGAAMADTFNALRANDLVWSFFVNNYLMGKDLTAFDLLCWNADQTRMPKALHMYYLRKFYHENALSQ 537
Cdd:TIGR01838 321 GIERQNG-GGGYLDGRQMAVTFSLLRENDLIWNYYVDNYLKGKSPVPFDLLFWNSDSTNLPGKMHNFYLRNLYLQNALTT 399
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622  538 GKLTIAGVPIDLKNVRIPVFEQSGREDHIAPPGSVFKSARLFGGPVTFVMAGSGHIAGVVNPPAAQKYQHWINElsnakG 617
Cdd:TIGR01838 400 GGLEVCGVRLDLSKVKVPVYIIATREDHIAPWQSAYRGAALLGGPKTFVLGESGHIAGVVNPPSKNKYGHWTNA-----A 474
                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 503245622  618 LPETLEAWQKDAVEHKGSWWDYWAQWLHDKSGPMVPARDPSKGKFKPDMDAPGSYVLV 675
Cdd:TIGR01838 475 LPADPEVWLAGATEHPGSWWPDWAAWLAGHSGKQVPARNPGNAKYPPLEPAPGRYVKV 532
PHA02682 super family cl31817
ORF080 virion core protein; Provisional
30-180 2.31e-06

ORF080 virion core protein; Provisional


The actual alignment was detected with superfamily member PHA02682:

Pssm-ID: 177464 [Multi-domain]  Cd Length: 280  Bit Score: 49.86  E-value: 2.31e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622  30 TPAMAPAPVAKATRKTAPKPKAASVEAPVAPKPAAQSAPSPTPPQSEPSPESTFDSEQMKAledlsinlAKAAITAQTAL 109
Cdd:PHA02682  95 CPACAPAAPAPAVTCPAPAPACPPATAPTCPPPAVCPAPARPAPACPPSTRQCPPAPPLPT--------PKPAPAAKPIF 166
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622 110 ASAVLKQPDFNGTpNGDPFQVAPAMTSVMTSlaQNPEKVIEAQT-----------DLMTGYMSLWAEMTRRSLGVETPED 178
Cdd:PHA02682 167 LHNQLPPPDYPAA-SCPTIETAPAASPVLEP--RIPDKIIDADNddkdlikkelaDIADSVRDLNAESLSLTRDIENAKS 243

                 ..
gi 503245622 179 TT 180
Cdd:PHA02682 244 TT 245
 
Name Accession Description Interval E-value
PHA_synth_I TIGR01838
poly(R)-hydroxyalkanoic acid synthase, class I; This model represents the class I subfamily of ...
141-675 0e+00

poly(R)-hydroxyalkanoic acid synthase, class I; This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. [Fatty acid and phospholipid metabolism, Biosynthesis]


Pssm-ID: 213656 [Multi-domain]  Cd Length: 532  Bit Score: 754.60  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622  141 LAQNPEKVIEAQTDLMTGYMSLWAEMTRRSLG--VETPEDTTPKDKRFSDPRWQQNLVFDMMRKSYLLSSTWLNNLVSSV 218
Cdd:TIGR01838   1 LSAQPARLFEAQASYWQQQMQLWQKALLRSAGedVEPFADPEPGDRRFASPAWSSHPFFDFLKQSYLLNSSWLLELVDAV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622  219 EDVDPLHKRRAEFFTKLVTDAFSPSNFLMSNPAALDTLLSSKGESLVKGMQKFADDLARGDGKLKISQADYAHFKVGENV 298
Cdd:TIGR01838  81 EGLDPKTRRRLEFFTRQLINAMAPSNFLATNPEALRLTVETQGESLVRGMENLAEDLERGGGDLKIRQTDSSAFEVGRNL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622  299 ATTPGKVVWRGPLFELLQYNPTTDEVHETPLLIFPPWINKYYILDLQSKNSLIKWLTDQGFSVFVVSWVNPDADLKDVTF 378
Cdd:TIGR01838 161 ATTPGAVVFENELFQLIQYEPTTETVHKTPLLIVPPWINKYYILDLRPQNSLVRWLVEQGHTVFVISWRNPDASQADKTF 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622  379 EDYMFGGVYKAMSLVREQTGSPKVNTVGYCIGGTLLGVALAHMAAKGDD-SVSSATFFTAQHDFSEAGDLLLFTNEAWLK 457
Cdd:TIGR01838 241 DDYIRDGVIAALEVVEAITGEKQVNCVGYCIGGTLLSTALAYLAARGDDkRIKSATFFTTLLDFSDPGELGVFVDEEIVA 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622  458 ELERQMDaAGGVLPGAAMADTFNALRANDLVWSFFVNNYLMGKDLTAFDLLCWNADQTRMPKALHMYYLRKFYHENALSQ 537
Cdd:TIGR01838 321 GIERQNG-GGGYLDGRQMAVTFSLLRENDLIWNYYVDNYLKGKSPVPFDLLFWNSDSTNLPGKMHNFYLRNLYLQNALTT 399
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622  538 GKLTIAGVPIDLKNVRIPVFEQSGREDHIAPPGSVFKSARLFGGPVTFVMAGSGHIAGVVNPPAAQKYQHWINElsnakG 617
Cdd:TIGR01838 400 GGLEVCGVRLDLSKVKVPVYIIATREDHIAPWQSAYRGAALLGGPKTFVLGESGHIAGVVNPPSKNKYGHWTNA-----A 474
                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 503245622  618 LPETLEAWQKDAVEHKGSWWDYWAQWLHDKSGPMVPARDPSKGKFKPDMDAPGSYVLV 675
Cdd:TIGR01838 475 LPADPEVWLAGATEHPGSWWPDWAAWLAGHSGKQVPARNPGNAKYPPLEPAPGRYVKV 532
PhaC COG3243
Poly-beta-hydroxybutyrate synthase [Lipid transport and metabolism];
122-675 0e+00

Poly-beta-hydroxybutyrate synthase [Lipid transport and metabolism];


Pssm-ID: 442475 [Multi-domain]  Cd Length: 545  Bit Score: 738.69  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622 122 TPNGDPFQVAPAMTSVMTSLAQNPEKVIEAQTDLMTGYMSLWAEMTRRSLG--VETPEDTTPKDKRFSDPRWQQNLVFDM 199
Cdd:COG3243    1 AAAGDSLAAAAAAAAAAAALLAAPARLLLAQAALAQRLLALWQAAAARLAGggAAPPPIPPPPDDRRFDPDWWWNPPFDF 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622 200 MRKSYLLSSTWLNNLVSSVEDVDPLHKRRAEFFTKLVTDAFSPSNFLMSNPAALDTLLSSKGESLVKGMQKFADDLARGd 279
Cdd:COG3243   81 IKQAYLLLAQWWLDAVADVEGLDPKTRRRVRFYTRQILDAMSPSNFLATNPEALKETLETGGESLVRGLENLLEDLERG- 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622 280 gklKISQADYAHFKVGENVATTPGKVVWRGPLFELLQYNPTTDEVHETPLLIFPPWINKYYILDLQSKNSLIKWLTDQGF 359
Cdd:COG3243  160 ---AISQTDESAFEVGENVATTPGKVVYRNDLMELIQYAPTTEKVHKTPLLIVPPWINKYYILDLQPGNSLVRYLVDQGF 236
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622 360 SVFVVSWVNPDADLKDVTFEDYMFGGVYKAMSLVREQTGSPKVNTVGYCIGGTLLGVALAHMAAKGDDSVSSATFFTAQH 439
Cdd:COG3243  237 TVFLISWGNPDAEDRDLGLDDYVEDGILAAVDAVREITGEDKVNLLGYCLGGTLLAIYAALLAARGPDRVASLTLLATPL 316
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622 440 DFSEAGDLLLFTNEAWLKELERQMDaAGGVLPGAAMADTFNALRANDLVWSFFVNNYLMGKDLTAFDLLCWNADQTRMPK 519
Cdd:COG3243  317 DFSEPGELGVFIDESQLADLEALMA-AKGYLPGRLMAGAFSLLRPNDLIWSYYVNNYLLGENPPPFDLLYWNADSTRLPG 395
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622 520 ALHMYYLRKFYHENALSQGKLTIAGVPIDLKNVRIPVFEQSGREDHIAPPGSVFKSARLFGG-PVTFVMAGSGHIAGVVN 598
Cdd:COG3243  396 RMHSQYLRDLYLENRLAKGELELGGRPVDLSDITVPVLVVAGEEDHIAPWRSVYALAQLVGGkDVTFVLAPGGHIGGIVN 475
                        490       500       510       520       530       540       550
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 503245622 599 PPAAQKYQHWINElsnakGLPETLEAWQKDAVEHKGSWWDYWAQWLHDKSGPMVPARDPskGKFKPDMDAPGSYVLV 675
Cdd:COG3243  476 PPGKPKRSYWTND-----RLPGDPDEWLAGAEEHPGSWWPDWADWLAERSGKKVPARAP--GSGPPLEDAPGTYVKE 545
PhaC_N pfam07167
Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus; This family represents the N-terminal ...
182-354 1.10e-92

Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus; This family represents the N-terminal region of the bacterial poly-beta-hydroxybutyrate polymerase (PhaC). Polyhydroxyalkanoic acids (PHAs) are carbon and energy reserve polymers produced in some bacteria when carbon sources are plentiful and another nutrient, such as nitrogen, phosphate, oxygen, or sulfur, becomes limiting. PHAs composed of monomeric units ranging from 3 to 14 carbons exist in nature. When the carbon source is exhausted, PHA is utilized by the bacterium. PhaC links D-(-)-3-hydroxybutyrl-CoA to an existing PHA molecule by the formation of an ester bond. This family appears to be a partial segment of an alpha/beta hydrolase domain.


Pssm-ID: 462110 [Multi-domain]  Cd Length: 173  Bit Score: 284.54  E-value: 1.10e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622  182 KDKRFSDPRWQQNLVFDMMRKSYLLSSTWLNNLVSSVEDVDPLHKRRAEFFTKLVTDAFSPSNFLMSNPAALDTLLSSKG 261
Cdd:pfam07167   1 RDRRFADPAWQTNPFFDFLKQAYLLTSKWLMDWVDEVEGLDPKTRARAEFFTRQLIDALAPSNFLATNPEALKETFESGG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622  262 ESLVKGMQKFADDLARGDGKLKISQADYAHFKVGENVATTPGKVVWRGPLFELLQYNPTTDEVHETPLLIFPPWINKYYI 341
Cdd:pfam07167  81 ESLVRGLENLLEDLERGGGDLKISQTDESAFEVGKNLATTPGKVVFRNELMELIQYKPTTEKVHKRPLLIVPPWINKFYI 160
                         170
                  ....*....|...
gi 503245622  342 LDLQSKNSLIKWL 354
Cdd:pfam07167 161 LDLSPQNSLVRWA 173
PHA02682 PHA02682
ORF080 virion core protein; Provisional
30-180 2.31e-06

ORF080 virion core protein; Provisional


Pssm-ID: 177464 [Multi-domain]  Cd Length: 280  Bit Score: 49.86  E-value: 2.31e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622  30 TPAMAPAPVAKATRKTAPKPKAASVEAPVAPKPAAQSAPSPTPPQSEPSPESTFDSEQMKAledlsinlAKAAITAQTAL 109
Cdd:PHA02682  95 CPACAPAAPAPAVTCPAPAPACPPATAPTCPPPAVCPAPARPAPACPPSTRQCPPAPPLPT--------PKPAPAAKPIF 166
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622 110 ASAVLKQPDFNGTpNGDPFQVAPAMTSVMTSlaQNPEKVIEAQT-----------DLMTGYMSLWAEMTRRSLGVETPED 178
Cdd:PHA02682 167 LHNQLPPPDYPAA-SCPTIETAPAASPVLEP--RIPDKIIDADNddkdlikkelaDIADSVRDLNAESLSLTRDIENAKS 243

                 ..
gi 503245622 179 TT 180
Cdd:PHA02682 244 TT 245
DedD COG3147
Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, ...
30-79 5.25e-04

Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442381 [Multi-domain]  Cd Length: 140  Bit Score: 40.91  E-value: 5.25e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 503245622  30 TPAMAPAPV-AKATRKTAPKPkaasVEAPVAPKPAAQSAPSPTPPQSEPSP 79
Cdd:COG3147   17 APAAAAAPApAAAAAAAAPKP----AAKPAAPKPAAAAAAAPAAKAAAPAG 63
 
Name Accession Description Interval E-value
PHA_synth_I TIGR01838
poly(R)-hydroxyalkanoic acid synthase, class I; This model represents the class I subfamily of ...
141-675 0e+00

poly(R)-hydroxyalkanoic acid synthase, class I; This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. [Fatty acid and phospholipid metabolism, Biosynthesis]


Pssm-ID: 213656 [Multi-domain]  Cd Length: 532  Bit Score: 754.60  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622  141 LAQNPEKVIEAQTDLMTGYMSLWAEMTRRSLG--VETPEDTTPKDKRFSDPRWQQNLVFDMMRKSYLLSSTWLNNLVSSV 218
Cdd:TIGR01838   1 LSAQPARLFEAQASYWQQQMQLWQKALLRSAGedVEPFADPEPGDRRFASPAWSSHPFFDFLKQSYLLNSSWLLELVDAV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622  219 EDVDPLHKRRAEFFTKLVTDAFSPSNFLMSNPAALDTLLSSKGESLVKGMQKFADDLARGDGKLKISQADYAHFKVGENV 298
Cdd:TIGR01838  81 EGLDPKTRRRLEFFTRQLINAMAPSNFLATNPEALRLTVETQGESLVRGMENLAEDLERGGGDLKIRQTDSSAFEVGRNL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622  299 ATTPGKVVWRGPLFELLQYNPTTDEVHETPLLIFPPWINKYYILDLQSKNSLIKWLTDQGFSVFVVSWVNPDADLKDVTF 378
Cdd:TIGR01838 161 ATTPGAVVFENELFQLIQYEPTTETVHKTPLLIVPPWINKYYILDLRPQNSLVRWLVEQGHTVFVISWRNPDASQADKTF 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622  379 EDYMFGGVYKAMSLVREQTGSPKVNTVGYCIGGTLLGVALAHMAAKGDD-SVSSATFFTAQHDFSEAGDLLLFTNEAWLK 457
Cdd:TIGR01838 241 DDYIRDGVIAALEVVEAITGEKQVNCVGYCIGGTLLSTALAYLAARGDDkRIKSATFFTTLLDFSDPGELGVFVDEEIVA 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622  458 ELERQMDaAGGVLPGAAMADTFNALRANDLVWSFFVNNYLMGKDLTAFDLLCWNADQTRMPKALHMYYLRKFYHENALSQ 537
Cdd:TIGR01838 321 GIERQNG-GGGYLDGRQMAVTFSLLRENDLIWNYYVDNYLKGKSPVPFDLLFWNSDSTNLPGKMHNFYLRNLYLQNALTT 399
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622  538 GKLTIAGVPIDLKNVRIPVFEQSGREDHIAPPGSVFKSARLFGGPVTFVMAGSGHIAGVVNPPAAQKYQHWINElsnakG 617
Cdd:TIGR01838 400 GGLEVCGVRLDLSKVKVPVYIIATREDHIAPWQSAYRGAALLGGPKTFVLGESGHIAGVVNPPSKNKYGHWTNA-----A 474
                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 503245622  618 LPETLEAWQKDAVEHKGSWWDYWAQWLHDKSGPMVPARDPSKGKFKPDMDAPGSYVLV 675
Cdd:TIGR01838 475 LPADPEVWLAGATEHPGSWWPDWAAWLAGHSGKQVPARNPGNAKYPPLEPAPGRYVKV 532
PhaC COG3243
Poly-beta-hydroxybutyrate synthase [Lipid transport and metabolism];
122-675 0e+00

Poly-beta-hydroxybutyrate synthase [Lipid transport and metabolism];


Pssm-ID: 442475 [Multi-domain]  Cd Length: 545  Bit Score: 738.69  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622 122 TPNGDPFQVAPAMTSVMTSLAQNPEKVIEAQTDLMTGYMSLWAEMTRRSLG--VETPEDTTPKDKRFSDPRWQQNLVFDM 199
Cdd:COG3243    1 AAAGDSLAAAAAAAAAAAALLAAPARLLLAQAALAQRLLALWQAAAARLAGggAAPPPIPPPPDDRRFDPDWWWNPPFDF 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622 200 MRKSYLLSSTWLNNLVSSVEDVDPLHKRRAEFFTKLVTDAFSPSNFLMSNPAALDTLLSSKGESLVKGMQKFADDLARGd 279
Cdd:COG3243   81 IKQAYLLLAQWWLDAVADVEGLDPKTRRRVRFYTRQILDAMSPSNFLATNPEALKETLETGGESLVRGLENLLEDLERG- 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622 280 gklKISQADYAHFKVGENVATTPGKVVWRGPLFELLQYNPTTDEVHETPLLIFPPWINKYYILDLQSKNSLIKWLTDQGF 359
Cdd:COG3243  160 ---AISQTDESAFEVGENVATTPGKVVYRNDLMELIQYAPTTEKVHKTPLLIVPPWINKYYILDLQPGNSLVRYLVDQGF 236
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622 360 SVFVVSWVNPDADLKDVTFEDYMFGGVYKAMSLVREQTGSPKVNTVGYCIGGTLLGVALAHMAAKGDDSVSSATFFTAQH 439
Cdd:COG3243  237 TVFLISWGNPDAEDRDLGLDDYVEDGILAAVDAVREITGEDKVNLLGYCLGGTLLAIYAALLAARGPDRVASLTLLATPL 316
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622 440 DFSEAGDLLLFTNEAWLKELERQMDaAGGVLPGAAMADTFNALRANDLVWSFFVNNYLMGKDLTAFDLLCWNADQTRMPK 519
Cdd:COG3243  317 DFSEPGELGVFIDESQLADLEALMA-AKGYLPGRLMAGAFSLLRPNDLIWSYYVNNYLLGENPPPFDLLYWNADSTRLPG 395
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622 520 ALHMYYLRKFYHENALSQGKLTIAGVPIDLKNVRIPVFEQSGREDHIAPPGSVFKSARLFGG-PVTFVMAGSGHIAGVVN 598
Cdd:COG3243  396 RMHSQYLRDLYLENRLAKGELELGGRPVDLSDITVPVLVVAGEEDHIAPWRSVYALAQLVGGkDVTFVLAPGGHIGGIVN 475
                        490       500       510       520       530       540       550
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 503245622 599 PPAAQKYQHWINElsnakGLPETLEAWQKDAVEHKGSWWDYWAQWLHDKSGPMVPARDPskGKFKPDMDAPGSYVLV 675
Cdd:COG3243  476 PPGKPKRSYWTND-----RLPGDPDEWLAGAEEHPGSWWPDWADWLAERSGKKVPARAP--GSGPPLEDAPGTYVKE 545
PhaC_N pfam07167
Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus; This family represents the N-terminal ...
182-354 1.10e-92

Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus; This family represents the N-terminal region of the bacterial poly-beta-hydroxybutyrate polymerase (PhaC). Polyhydroxyalkanoic acids (PHAs) are carbon and energy reserve polymers produced in some bacteria when carbon sources are plentiful and another nutrient, such as nitrogen, phosphate, oxygen, or sulfur, becomes limiting. PHAs composed of monomeric units ranging from 3 to 14 carbons exist in nature. When the carbon source is exhausted, PHA is utilized by the bacterium. PhaC links D-(-)-3-hydroxybutyrl-CoA to an existing PHA molecule by the formation of an ester bond. This family appears to be a partial segment of an alpha/beta hydrolase domain.


Pssm-ID: 462110 [Multi-domain]  Cd Length: 173  Bit Score: 284.54  E-value: 1.10e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622  182 KDKRFSDPRWQQNLVFDMMRKSYLLSSTWLNNLVSSVEDVDPLHKRRAEFFTKLVTDAFSPSNFLMSNPAALDTLLSSKG 261
Cdd:pfam07167   1 RDRRFADPAWQTNPFFDFLKQAYLLTSKWLMDWVDEVEGLDPKTRARAEFFTRQLIDALAPSNFLATNPEALKETFESGG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622  262 ESLVKGMQKFADDLARGDGKLKISQADYAHFKVGENVATTPGKVVWRGPLFELLQYNPTTDEVHETPLLIFPPWINKYYI 341
Cdd:pfam07167  81 ESLVRGLENLLEDLERGGGDLKISQTDESAFEVGKNLATTPGKVVFRNELMELIQYKPTTEKVHKRPLLIVPPWINKFYI 160
                         170
                  ....*....|...
gi 503245622  342 LDLQSKNSLIKWL 354
Cdd:pfam07167 161 LDLSPQNSLVRWA 173
PHA_synth_III_C TIGR01836
poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit; This model represents the PhaC ...
262-611 8.77e-41

poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit; This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates. [Fatty acid and phospholipid metabolism, Biosynthesis]


Pssm-ID: 130895  Cd Length: 350  Bit Score: 152.58  E-value: 8.77e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622  262 ESLVKGMQKFADDLARGDGKLkisqADYAHFKVGenvaTTPGKVVWRGPLFELLQYNPTTDEVHETPLLIFPPWINKYYI 341
Cdd:TIGR01836   6 ESLAQEYLDFTRKLKEGYENL----TNEEDIEVG----VTPKEVVYREDKVVLYRYTPVKDNTHKTPLLIVYALVNRPYM 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622  342 LDLQSKNSLIKWLTDQGFSVFVVSWVNPDADLKDVTFEDYMFGGVYKAMSLVREQTGSPKVNTVGYCIGGTLlgvALAHm 421
Cdd:TIGR01836  78 LDLQEDRSLVRGLLERGQDVYLIDWGYPDRADRYLTLDDYINGYIDKCVDYICRTSKLDQISLLGICQGGTF---SLCY- 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622  422 AAKGDDSVSSATFFTAQHDFSEAGDLLLFTNEAWlkELERQMDAAGGVlPGAAMADTFNALRAndlvwsfFVNNYlmGKD 501
Cdd:TIGR01836 154 AALYPDKIKNLVTMVTPVDFETPGNMLSNWARHV--DIDLAVDTMGNI-PGELLNLTFLMLKP-------FSLGY--QKY 221
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622  502 LTAFDLLcwnADQT------RM--------PKALHMY--YLRKFYHENALSQGKLTIAGVPIDLKNVRIPVFEQSGREDH 565
Cdd:TIGR01836 222 VNLVDIL---EDERkvenflRMekwifdspDQAGEAFrqFVKDFYQQNGLINGEVEIGGRKVDLKNIKMPILNIYAERDH 298
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|..
gi 503245622  566 IAPPGSVFKSARLFGGPVTFVMA-GSGHIaGVVNPPAAQK-----YQHWINE 611
Cdd:TIGR01836 299 LVPPDASKALNDLVSSEDYTELSfPGGHI-GIYVSGKAQKevppaIGKWLQA 349
Abhydrolase_1 pfam00561
alpha/beta hydrolase fold; This catalytic domain is found in a very wide range of enzymes.
349-599 5.53e-14

alpha/beta hydrolase fold; This catalytic domain is found in a very wide range of enzymes.


Pssm-ID: 395444 [Multi-domain]  Cd Length: 245  Bit Score: 72.15  E-value: 5.53e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622  349 SLIKWLTDQGFSVFVVSWVNPDADLKDVTFEDYMFGGVYKAMSLVREQTGSPKVNTVGYCIGGTLLgvalAHMAAKGDDS 428
Cdd:pfam00561  18 KLAPALARDGFRVIALDLRGFGKSSRPKAQDDYRTDDLAEDLEYILEALGLEKVNLVGHSMGGLIA----LAYAAKYPDR 93
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622  429 VSSATFFTAQHDFSEAGDLLLFTNEAWLKELERQMDAA----GGVLPGAAMADTFNALRA----NDLVWSFFVNNYLMGK 500
Cdd:pfam00561  94 VKALVLLGALDPPHELDEADRFILALFPGFFDGFVADFapnpLGRLVAKLLALLLLRLRLlkalPLLNKRFPSGDYALAK 173
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622  501 DLTAFDLLCWNADQTRmpkalhmyYLRKFYHenalsqgkltiagvpidlkNVRIPVFEQSGREDHIAPPGSVFKSARLFG 580
Cdd:pfam00561 174 SLVTGALLFIETWSTE--------LRAKFLG-------------------RLDEPTLIIWGDQDPLVPPQALEKLAQLFP 226
                         250
                  ....*....|....*....
gi 503245622  581 GPVTFVMAGSGHIAGVVNP 599
Cdd:pfam00561 227 NARLVVIPDAGHFAFLEGP 245
PHA02682 PHA02682
ORF080 virion core protein; Provisional
30-180 2.31e-06

ORF080 virion core protein; Provisional


Pssm-ID: 177464 [Multi-domain]  Cd Length: 280  Bit Score: 49.86  E-value: 2.31e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622  30 TPAMAPAPVAKATRKTAPKPKAASVEAPVAPKPAAQSAPSPTPPQSEPSPESTFDSEQMKAledlsinlAKAAITAQTAL 109
Cdd:PHA02682  95 CPACAPAAPAPAVTCPAPAPACPPATAPTCPPPAVCPAPARPAPACPPSTRQCPPAPPLPT--------PKPAPAAKPIF 166
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622 110 ASAVLKQPDFNGTpNGDPFQVAPAMTSVMTSlaQNPEKVIEAQT-----------DLMTGYMSLWAEMTRRSLGVETPED 178
Cdd:PHA02682 167 LHNQLPPPDYPAA-SCPTIETAPAASPVLEP--RIPDKIIDADNddkdlikkelaDIADSVRDLNAESLSLTRDIENAKS 243

                 ..
gi 503245622 179 TT 180
Cdd:PHA02682 244 TT 245
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
31-137 2.07e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 47.79  E-value: 2.07e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622  31 PAMAPAPVAKATRKTAPK-PKAASVEAPVAPKPAAQSAPSPTPPQSEPSPestfdsEQMKALEDLSINLAKAAITAQTAL 109
Cdd:PRK14951 387 AAPAAAPVAQAAAAPAPAaAPAAAASAPAAPPAAAPPAPVAAPAAAAPAA------APAAAPAAVALAPAPPAQAAPETV 460
                         90       100
                 ....*....|....*....|....*...
gi 503245622 110 ASAVLKQPDFNGTPNGDPFQVAPAMTSV 137
Cdd:PRK14951 461 AIPVRVAPEPAVASAAPAPAAAPAAARL 488
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
31-133 5.06e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 46.77  E-value: 5.06e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622  31 PAMAPAPVAKATRKTAPKPKAASVEAPVAPKPAAQSAPS-PTPPQSEPSPESTFDSEQMKALEDLSINLAKAAITAQTAL 109
Cdd:PRK07003 383 PGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATrAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSR 462
                         90       100
                 ....*....|....*....|....
gi 503245622 110 ASAVLKQPDFNGTPNGDPFQVAPA 133
Cdd:PRK07003 463 CDERDAQPPADSGSASAPASDAPP 486
DedD COG3147
Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, ...
30-79 5.25e-04

Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442381 [Multi-domain]  Cd Length: 140  Bit Score: 40.91  E-value: 5.25e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 503245622  30 TPAMAPAPV-AKATRKTAPKPkaasVEAPVAPKPAAQSAPSPTPPQSEPSP 79
Cdd:COG3147   17 APAAAAAPApAAAAAAAAPKP----AAKPAAPKPAAAAAAAPAAKAAAPAG 63
PRK04654 PRK04654
sec-independent translocase; Provisional
30-79 6.69e-04

sec-independent translocase; Provisional


Pssm-ID: 135173 [Multi-domain]  Cd Length: 214  Bit Score: 41.72  E-value: 6.69e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 503245622  30 TPAMAPAPVAKATRKTAPKPKAASVEAP---VAPKPAAQSAPSPTPPQSEPSP 79
Cdd:PRK04654 140 TPVPAPAPVIAQAQPIAPAPHQTLVPAPhdtIVPAPHAAHLPSAPATPVSVAP 192
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
30-146 1.15e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 42.14  E-value: 1.15e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622  30 TPAMAPAPVAKATRKT--APKPKAASVEAPVAPKPAAQSAPSPTPPQSEPSPESTfdseqmkALEDLSINLAKAAITAQT 107
Cdd:PRK07003 425 APPAAPAPPATADRGDdaADGDAPVPAKANARASADSRCDERDAQPPADSGSASA-------PASDAPPDAAFEPAPRAA 497
                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 503245622 108 ALASAVLKQPDFNGTPNGDPFQVAPAMTSVMTSLAQNPE 146
Cdd:PRK07003 498 APSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPT 536
PHA03247 PHA03247
large tegument protein UL36; Provisional
35-145 1.46e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 42.23  E-value: 1.46e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622   35 PAPVAKATRKTAPkPKAASVEAPVAPK--PAAQSAPSPTPPQ--------SEPSPESTFDSEQMKALEDLSINLAKAAIT 104
Cdd:PHA03247 2580 PAVTSRARRPDAP-PQSARPRAPVDDRgdPRGPAPPSPLPPDthapdpppPSPSPAANEPDPHPPPTVPPPERPRDDPAP 2658
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 503245622  105 AQTAL---ASAVLKQPDFNGTPNGDPFQVAPAMTSVMTSLAQNP 145
Cdd:PHA03247 2659 GRVSRprrARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPP 2702
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
30-91 1.56e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 41.80  E-value: 1.56e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 503245622   30 TPAMAPAPVAKATRKTAPKPKAASVEAPVAPKPAAQSAPSPTPPQSEPSPESTFDSEQMKAL 91
Cdd:PRK12270   59 AAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTPL 120
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
30-80 1.75e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 41.21  E-value: 1.75e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 503245622  30 TPAMAPAPVAKATRKTAPKPKAASVEAPvAPKPAAQSAPSPTPPQSEPSPE 80
Cdd:PTZ00144 121 GGAPPAAAPAAAAAAKAEKTTPEKPKAA-APTPEPPAASKPTPPAAAKPPE 170
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
30-80 2.93e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 41.01  E-value: 2.93e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 503245622  30 TPAMAPAPVAKATRKTAPKPKAASVEAPVAPKPAAQSAPSP--TPPQSEPSPE 80
Cdd:PRK12323 453 APAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADddPPPWEELPPE 505
motB PRK05996
MotB family protein;
1-102 3.60e-03

MotB family protein;


Pssm-ID: 235665 [Multi-domain]  Cd Length: 423  Bit Score: 40.45  E-value: 3.60e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622   1 MTEKSTEKPASKAKTRKAAAPKKAVAAEATPAMAPAPVAKATRKTAPKPKAASVEAPVAPKPAAQSAPSPTPPQSEPSPE 80
Cdd:PRK05996 192 VTTAGDLLPPGQAREQAQGAKSATAAPATVPQAAPLPQAQPKKAATEEELIADAKKAATGEPAANAAKAAKPEPMPDDQQ 271
                         90       100
                 ....*....|....*....|..
gi 503245622  81 STFDSEQMKALEDLSINLAKAA 102
Cdd:PRK05996 272 KEAEQLQAAIAQAIGGVAGKLA 293
EstA COG1075
Triacylglycerol esterase/lipase EstA, alpha/beta hydrolase fold [Lipid transport and ...
348-434 4.08e-03

Triacylglycerol esterase/lipase EstA, alpha/beta hydrolase fold [Lipid transport and metabolism];


Pssm-ID: 440693 [Multi-domain]  Cd Length: 106  Bit Score: 37.50  E-value: 4.08e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622 348 NSLIKWLTDQGFSVFVVSWVNPDADLKDVTFEdymfggVYKAMSLVREQTGSPKVNTVGYCIGGTLLGVALAHMAakGDD 427
Cdd:COG1075   22 APLAPRLRAAGYPVYALNYPSTNGSIEDSAEQ------LAAFVDAVLAATGAEKVDLVGHSMGGLVARYYLKRLG--GAA 93

                 ....*..
gi 503245622 428 SVSSATF 434
Cdd:COG1075   94 KVARVVT 100
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
30-151 4.86e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 40.24  E-value: 4.86e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503245622  30 TPAMAPAPVAKATRK------TAPKPKAASVEAPVAPKPAAQSAPSP-----TPPQSEPSPESTFDSEQMKALEDLSINL 98
Cdd:PRK12323 427 SPAPEALAAARQASArgpggaPAPAPAPAAAPAAAARPAAAGPRPVAaaaaaAPARAAPAAAPAPADDDPPPWEELPPEF 506
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 503245622  99 AKAAITAQTALASAVLKQ--PDFNGTPNGDPF--QVAPAMTSVMTSLAQNPEKVIEA 151
Cdd:PRK12323 507 ASPAPAQPDAAPAGWVAEsiPDPATADPDDAFetLAPAPAAAPAPRAAAATEPVVAP 563
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
31-82 5.32e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 40.26  E-value: 5.32e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 503245622   31 PAMAPAPVAKATRKTAPKPKAASVEAPVAPKPAAQSAPSPTPPQSEPSPEST 82
Cdd:PRK12270   38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAA 89
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
30-80 6.83e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.58  E-value: 6.83e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 503245622  30 TPAMAPAPVAKATRKTAPKPKAASVEAPVAPKPAAQSAPSPTPPQSEPSPE 80
Cdd:PRK07764 399 PSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAP 449
PRK11633 PRK11633
cell division protein DedD; Provisional
30-79 8.59e-03

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 38.45  E-value: 8.59e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 503245622  30 TPAMAPAPVAKATRKTAPKPKAASVEAPvAPKPAAQSAPSPTPPQSEPSP 79
Cdd:PRK11633  96 PVEPEPAPVEPPKPKPVEKPKPKPKPQQ-KVEAPPAPKPEPKPVVEEKAA 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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