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Conserved domains on  [gi|503339820|ref|WP_013574481|]
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MULTISPECIES: NADH-quinone oxidoreductase subunit B family protein [Rahnella]

Protein Classification

NADH-quinone oxidoreductase subunit B family protein( domain architecture ID 10007134)

NADH-quinone oxidoreductase subunit B (NuoB) family protein such as Escherichia coli formate hydrogenlyase subunit 7

EC:  1.-.-.-
Gene Ontology:  GO:0048038|GO:0008137|GO:0022900|GO:1990204
PubMed:  9299297|10449365
SCOP:  4000435

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HycG COG3260
Ni,Fe-hydrogenase III small subunit [Energy production and conversion];
34-169 5.23e-83

Ni,Fe-hydrogenase III small subunit [Energy production and conversion];


:

Pssm-ID: 442491  Cd Length: 137  Bit Score: 244.70  E-value: 5.23e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503339820  34 SIRRSAYVYRVDCGGCNGCEIEIFAAISPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRIPALRAWDSAPDPKICISY 113
Cdd:COG3260    2 VLGRSLWIRHVDAGSCNGCEIEILALLTPRYDLERFGIKFVASPRHADVLLVTGPVTRNMREALLRTYEAMPEPKVVVAV 81

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 503339820 114 GACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATIYGFAMALGLLDQKIK 169
Cdd:COG3260   82 GDCACSGGVFRDSYAVLGGVDKVIPVDVYIPGCPPRPEAILDGLLKALGRLEEKLK 137
 
Name Accession Description Interval E-value
HycG COG3260
Ni,Fe-hydrogenase III small subunit [Energy production and conversion];
34-169 5.23e-83

Ni,Fe-hydrogenase III small subunit [Energy production and conversion];


Pssm-ID: 442491  Cd Length: 137  Bit Score: 244.70  E-value: 5.23e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503339820  34 SIRRSAYVYRVDCGGCNGCEIEIFAAISPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRIPALRAWDSAPDPKICISY 113
Cdd:COG3260    2 VLGRSLWIRHVDAGSCNGCEIEILALLTPRYDLERFGIKFVASPRHADVLLVTGPVTRNMREALLRTYEAMPEPKVVVAV 81

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 503339820 114 GACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATIYGFAMALGLLDQKIK 169
Cdd:COG3260   82 GDCACSGGVFRDSYAVLGGVDKVIPVDVYIPGCPPRPEAILDGLLKALGRLEEKLK 137
PRK06411 PRK06411
NADH-quinone oxidoreductase subunit NuoB;
46-179 1.52e-42

NADH-quinone oxidoreductase subunit NuoB;


Pssm-ID: 235797  Cd Length: 183  Bit Score: 143.20  E-value: 1.52e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503339820  46 CGGCngCEIEIFAAISPLFDAERFGIKVVPSPRHADILLFTGAVTRAMrIPALR-AWDSAPDPKICISYGACGNSGGIFH 124
Cdd:PRK06411  43 GLAC--CAIEMMAAGTSRYDLDRFGMVFRASPRQADLMIVAGTLTNKM-APALRrLYDQMPEPKWVISMGSCANSGGMYH 119

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 503339820 125 DLYCVWGGTDKIVPVDVYIPGCPPTPAATIYGFAMalglLDQKIKGQQHDEAATE 179
Cdd:PRK06411 120 YSYSVVQGVDRIVPVDVYVPGCPPRPEALLYGILK----LQKKIRQSERERKRGE 170
nuoB_fam TIGR01957
NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that ...
 52-171 2.27e-42

NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2. [Energy metabolism, Electron transport]


Pssm-ID: 273896  Cd Length: 145  Bit Score: 141.72  E-value: 2.27e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503339820   52 CEIEIFAAISPLFDAERFGIKVV-PSPRHADILLFTGAVTRAMrIPAL-RAWDSAPDPKICISYGACGNSGGIFHDLYCV 129
Cdd:TIGR01957  29 CAIEMMATGASRYDLDRFGSEVFrASPRQADVMIVAGTVTKKM-APALrRLYDQMPEPKWVISMGACANSGGMFHTSYSV 107

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 503339820  130 WGGTDKIVPVDVYIPGCPPTPAATIYGFAmalgLLDQKIKGQ 171
Cdd:TIGR01957 108 VQGVDRIVPVDVYIPGCPPRPEALIYGLI----KLQKKIKRE 145
Oxidored_q6 pfam01058
NADH ubiquinone oxidoreductase, 20 Kd subunit;
49-160 1.92e-33

NADH ubiquinone oxidoreductase, 20 Kd subunit;


Pssm-ID: 426021 [Multi-domain]  Cd Length: 124  Bit Score: 118.07  E-value: 1.92e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503339820   49 CNGCEIEIFAAISPLFDA-----ERFGIKVVPSPR----HADILLFTGAVTRAMRIPALRAWDSAPDPKICISYGACGNS 119
Cdd:pfam01058   1 CTGCTISLLALHPPLLDLldlisLRYGIPLMASPReipeGADVLLVEGAVTRKPKEALERLYEAAPKAKYVIAVGTCAAF 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 503339820  120 GGIF---HDLYCVWGGTDKIVPVDVYIPGCPPTPAATIYGFAMA 160
Cdd:pfam01058  81 GGIPaagNNPSYGVRPVLEVVPVDINIPGCPPHPEAILGTLLAL 124
 
Name Accession Description Interval E-value
HycG COG3260
Ni,Fe-hydrogenase III small subunit [Energy production and conversion];
34-169 5.23e-83

Ni,Fe-hydrogenase III small subunit [Energy production and conversion];


Pssm-ID: 442491  Cd Length: 137  Bit Score: 244.70  E-value: 5.23e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503339820  34 SIRRSAYVYRVDCGGCNGCEIEIFAAISPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRIPALRAWDSAPDPKICISY 113
Cdd:COG3260    2 VLGRSLWIRHVDAGSCNGCEIEILALLTPRYDLERFGIKFVASPRHADVLLVTGPVTRNMREALLRTYEAMPEPKVVVAV 81

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 503339820 114 GACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATIYGFAMALGLLDQKIK 169
Cdd:COG3260   82 GDCACSGGVFRDSYAVLGGVDKVIPVDVYIPGCPPRPEAILDGLLKALGRLEEKLK 137
NuoB COG0377
NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy ...
 52-173 1.08e-43

NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy production and conversion]; NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440146  Cd Length: 152  Bit Score: 145.32  E-value: 1.08e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503339820  52 CEIEIFAAISPLFDAERFGIKVV-PSPRHADILLFTGAVTRAMRiPAL-RAWDSAPDPKICISYGACGNSGGIFHDLYCV 129
Cdd:COG0377   26 CAIEMMAAGASRYDLERFGAEVPrASPRQADLMIVAGTVTKKMA-PVLrRLYEQMPEPKWVIAMGACAISGGPYWDSYSV 104

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 503339820 130 WGGTDKIVPVDVYIPGCPPTPAATIYGFAMalglLDQKIKGQQH 173
Cdd:COG0377  105 VQGVDKIIPVDVYVPGCPPRPEALLDGILK----LQEKIRRERL 144
PRK06411 PRK06411
NADH-quinone oxidoreductase subunit NuoB;
46-179 1.52e-42

NADH-quinone oxidoreductase subunit NuoB;


Pssm-ID: 235797  Cd Length: 183  Bit Score: 143.20  E-value: 1.52e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503339820  46 CGGCngCEIEIFAAISPLFDAERFGIKVVPSPRHADILLFTGAVTRAMrIPALR-AWDSAPDPKICISYGACGNSGGIFH 124
Cdd:PRK06411  43 GLAC--CAIEMMAAGTSRYDLDRFGMVFRASPRQADLMIVAGTLTNKM-APALRrLYDQMPEPKWVISMGSCANSGGMYH 119

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 503339820 125 DLYCVWGGTDKIVPVDVYIPGCPPTPAATIYGFAMalglLDQKIKGQQHDEAATE 179
Cdd:PRK06411 120 YSYSVVQGVDRIVPVDVYVPGCPPRPEALLYGILK----LQKKIRQSERERKRGE 170
nuoB_fam TIGR01957
NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that ...
 52-171 2.27e-42

NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2. [Energy metabolism, Electron transport]


Pssm-ID: 273896  Cd Length: 145  Bit Score: 141.72  E-value: 2.27e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503339820   52 CEIEIFAAISPLFDAERFGIKVV-PSPRHADILLFTGAVTRAMrIPAL-RAWDSAPDPKICISYGACGNSGGIFHDLYCV 129
Cdd:TIGR01957  29 CAIEMMATGASRYDLDRFGSEVFrASPRQADVMIVAGTVTKKM-APALrRLYDQMPEPKWVISMGACANSGGMFHTSYSV 107

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 503339820  130 WGGTDKIVPVDVYIPGCPPTPAATIYGFAmalgLLDQKIKGQ 171
Cdd:TIGR01957 108 VQGVDRIVPVDVYIPGCPPRPEALIYGLI----KLQKKIKRE 145
Oxidored_q6 pfam01058
NADH ubiquinone oxidoreductase, 20 Kd subunit;
49-160 1.92e-33

NADH ubiquinone oxidoreductase, 20 Kd subunit;


Pssm-ID: 426021 [Multi-domain]  Cd Length: 124  Bit Score: 118.07  E-value: 1.92e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503339820   49 CNGCEIEIFAAISPLFDA-----ERFGIKVVPSPR----HADILLFTGAVTRAMRIPALRAWDSAPDPKICISYGACGNS 119
Cdd:pfam01058   1 CTGCTISLLALHPPLLDLldlisLRYGIPLMASPReipeGADVLLVEGAVTRKPKEALERLYEAAPKAKYVIAVGTCAAF 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 503339820  120 GGIF---HDLYCVWGGTDKIVPVDVYIPGCPPTPAATIYGFAMA 160
Cdd:pfam01058  81 GGIPaagNNPSYGVRPVLEVVPVDINIPGCPPHPEAILGTLLAL 124
PRK14819 PRK14819
NADH-quinone oxidoreductase subunit B;
52-172 4.03e-29

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 237822  Cd Length: 264  Bit Score: 110.84  E-value: 4.03e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503339820  52 CEIEIFAAISPLFDAERFGIKVV-PSPRHADILLFTGAVTRAMRIPALRAWDSAPDPKICISYGACGNSGGIFHDLYCVW 130
Cdd:PRK14819  43 CAIEMMATGLSRYDLARFGAELFrASPRQADLMIVAGTVTKKMAPQVVRLYNQMPEPRYVISMGACATSGGPFRDGYNVL 122

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 503339820 131 GGTDKIVPVDVYIPGCPPTPAATIYgfamALGLLDQKIKGQQ 172
Cdd:PRK14819 123 RGIDLLIPVDVYIPGCPPRPEALLH----ALMTLQKQIDAQS 160
PRK14815 PRK14815
NADH dehydrogenase subunit B; Provisional
 52-172 4.42e-29

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 237821  Cd Length: 183  Bit Score: 108.45  E-value: 4.42e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503339820  52 CEIEIFAAISPLFDAERFGIKVVP-SPRHADILLFTGAVTRAMRIPALRAWDSAPDPKICISYGACGNSGGIFHDlYCVW 130
Cdd:PRK14815  45 CAIELMAVACSRFDISRFGAEVMRfSPRQADVMIVAGTVTYKMALAVRRIYDQMPEPKWVIAMGACASSGGMYRS-YSVL 123

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 503339820 131 GGTDKIVPVDVYIPGCPPTPAATIygfaMALGLLDQKIKGQQ 172
Cdd:PRK14815 124 QGVDRILPVDVYISGCPPRPEAIL----DALIKLQKKIDTER 161
PRK14818 PRK14818
NADH dehydrogenase subunit B; Provisional
 52-157 1.41e-28

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 173279  Cd Length: 173  Bit Score: 106.96  E-value: 1.41e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503339820  52 CEIEIFAAISPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRIPALRAWDSAPDPKICISYGACGNSGGIFHDLYCVWG 131
Cdd:PRK14818  43 CGIELMQTGGPRADVMRFGAIPRASPRQADFMIVAGTLTYKMAERARLLYDQMPEPKYVISMGSCSNCGGLFQLGYSVCK 122

                         90       100
                 ....*....|....*....|....*.
gi 503339820 132 GTDKIVPVDVYIPGCPPTPAATIYGF 157
Cdd:PRK14818 123 GVDKVIPVDVYVPGCPPRPEALTEGL 148
PRK14816 PRK14816
NADH-quinone oxidoreductase subunit B;
52-172 1.50e-28

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 173277  Cd Length: 182  Bit Score: 107.31  E-value: 1.50e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503339820  52 CEIEIFAAISPLFDAERFGIKVV-PSPRHADILLFTGAVTRAMRIPALRAWDSAPDPKICISYGACGNSGGIFHDLYCVW 130
Cdd:PRK14816  53 CGIEFMALGAARYDMARFGFEVArASPRQADMIMVCGTITNKMAPVLKRLYDQMADPKYVIAVGGCAVSGGPFKKSYHVL 132

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 503339820 131 GGTDKIVPVDVYIPGCPPTPAATIYGFAMalglLDQKIKGQQ 172
Cdd:PRK14816 133 NGVDKILPVDVYIPGCPPRPEAFYYGMMQ----LQRKVKIEK 170
PRK14817 PRK14817
NADH-quinone oxidoreductase subunit B;
10-181 6.11e-28

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 173278  Cd Length: 181  Bit Score: 105.43  E-value: 6.11e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503339820  10 DENGLPVPVTL-DESIAKLKSTLLHSI---RRSA---YVYRVDCggcngCEIEIFAAISPLFDAERFGIKVvP--SPRHA 80
Cdd:PRK14817   3 ELDGLPVIATRrEEAEGFLQGLVSKSLgwaRKYSlftYPFVTAC-----CGMEYMTMASARYDSDRFGAAM-PrfSPRQA 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503339820  81 DILLFTGAVTrAMRIPAL-RAWDSAPDPKICISYGACGNSGGiFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATIYGfam 159
Cdd:PRK14817  77 DLLMVVGTVN-CKQAPILqRVYEQMADPKWVMAFGVCASSGG-FYDNYATVQGIDRIIPVDVYVPGCPPRPEQVLDG--- 151

                        170       180
                 ....*....|....*....|..
gi 503339820 160 aLGLLDQKIKGQQHDEAATEPA 181
Cdd:PRK14817 152 -IMLLQKKIQNQSHKLIDRKPL 172
PRK13292 PRK13292
NADH-quinone oxidoreductase subunit B/C/D;
48-184 7.34e-28

NADH-quinone oxidoreductase subunit B/C/D;


Pssm-ID: 183955 [Multi-domain]  Cd Length: 788  Bit Score: 112.18  E-value: 7.34e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503339820  48 GCNGCEIEIFAAISPLFDAERFGIKVV-PSPRHADILLFTGAVTRAMRIPALRAWDSAPDPKICISYGACGNSGGIFhDL 126
Cdd:PRK13292  30 GLSCCFVEMMTSFTSRYDISRFGAEVLrGTPREADLMVIAGTVFKKMAPSILRLYEQMAEPKWVISMGSCANSGGMY-DV 108

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 503339820 127 YCVWGGTDKIVPVDVYIPGCPPTPAATIYGfamaLGLLDQKIKgqqHDEAATEPALLL 184
Cdd:PRK13292 109 YSVVQGVNQILPVDVYIPGCPPRPEAFLQG----LMLLQEKIR---REERPARPVLHL 159
PRK14820 PRK14820
NADH-quinone oxidoreductase subunit B;
52-157 2.14e-27

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 184833  Cd Length: 180  Bit Score: 104.14  E-value: 2.14e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503339820  52 CEIEIFAAISPLFDAERFGIKVVP-SPRHADILLFTGAVTRAMRiPALR-AWDSAPDPKICISYGACGNSGGIFhDLYCV 129
Cdd:PRK14820  45 CGIEFMATMASHYDLARFGSERPSfSPRQADMLMVMGTIAKKMA-PVLKqVYLQMAEPRWVVAVGACASSGGIF-DTYSV 122

                         90       100
                 ....*....|....*....|....*...
gi 503339820 130 WGGTDKIVPVDVYIPGCPPTPAATIYGF 157
Cdd:PRK14820 123 LQGIDRIIPVDVYVPGCPPRPEQIIDGV 150
ndhK CHL00023
NADH dehydrogenase subunit K
 48-154 3.63e-26

NADH dehydrogenase subunit K


Pssm-ID: 214337  Cd Length: 225  Bit Score: 102.09  E-value: 3.63e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503339820  48 GCNGCEIEIFAAISPLFDAERFGIkvVP--SPRHADILLFTGAVTRAMrIPAL-RAWDSAPDPKICISYGACGNSGGIFH 124
Cdd:CHL00023  40 GTSCCFIEFASLIGSRFDFDRYGL--VPrsSPRQADLILTAGTVTMKM-APSLvRLYEQMPEPKYVIAMGACTITGGMFS 116

                         90       100       110
                 ....*....|....*....|....*....|.
gi 503339820 125 -DLYCVWGGTDKIVPVDVYIPGCPPTPAATI 154
Cdd:CHL00023 117 tDSYSTVRGVDKLIPVDVYLPGCPPKPEAVI 147
PRK14813 PRK14813
NADH dehydrogenase subunit B; Provisional
 52-157 1.51e-25

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 173274  Cd Length: 189  Bit Score: 99.57  E-value: 1.51e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503339820  52 CEIEIFAAISPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRIPALRAWDSAPDPKICISYGACGNSGGIF-HDLYCVW 130
Cdd:PRK14813  40 CAIEMMATNASNYDLERFGIFPRSSPRQSDLMIVAGTVTMKMAERVVRLYEQMPEPRYVLSMGSCSNCGGPYwEHGYHVL 119

                         90       100
                 ....*....|....*....|....*..
gi 503339820 131 GGTDKIVPVDVYIPGCPPTPAATIYGF 157
Cdd:PRK14813 120 KGVDRIIPVDVYVPGCPPRPEALIGGL 146
PRK14814 PRK14814
NADH dehydrogenase subunit B; Provisional
 52-171 3.67e-25

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 173275  Cd Length: 186  Bit Score: 98.56  E-value: 3.67e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503339820  52 CEIEIFAAISPLFDAERFGIKVVP-SPRHADILLFTGAVTRAMrIPALRA-WDSAPDPKICISYGACGNSGGIFHDlYCV 129
Cdd:PRK14814  45 CGIEYMSTACSDYDIARFGAERPSfSPRQADMILVLGTITYKM-APVLRQiYDQMAEPKFVISVGACASSGGMFHT-YGV 122

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 503339820 130 WGGTDKIVPVDVYIPGCPPTPAATIygfaMALGLLDQKIKGQ 171
Cdd:PRK14814 123 LQGVDRILPVDVYVPGCPPRPEAIL----DALVKLQTKLKTQ 160
FrhG COG1941
Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion];
44-152 1.70e-09

Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion];


Pssm-ID: 441544 [Multi-domain]  Cd Length: 262  Bit Score: 56.86  E-value: 1.70e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503339820  44 VDCGGCNGCEIEIFAAISPLFD-AERFGIK-------VVPSPRHADILLFTGAVTRA---MRIPALRAwdsapDPKICIS 112
Cdd:COG1941    9 YWLAGCSGCQLSFLDLDERLLDlLELVEIVyfpeasdVKEIPEPVDVALVEGSIRNEeneERLKEIRE-----KSKILVA 83

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 503339820 113 YGACGNSGGI-----FHD----LYCVWGGT----------------------DKIVPVDVYIPGCPPTPAA 152
Cdd:COG1941   84 LGACAVTGGIpalrnLYDleelLERVYGETpstnpqipgeelpelldrvrplSEVVKVDYELPGCPPDPDQ 154
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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