NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|503427277|ref|WP_013661938|]
View 

DUF4279 domain-containing protein [Marinomonas mediterranea]

Protein Classification

DUF4279 domain-containing protein( domain architecture ID 10624169)

DUF4279 domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF4279 pfam14106
Domain of unknown function (DUF4279); This family of proteins is functionally uncharacterized. ...
 16-128 1.19e-27

Domain of unknown function (DUF4279); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 134 and 145 amino acids in length.


:

Pssm-ID: 433720  Cd Length: 116  Bit Score: 98.50  E-value: 1.19e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503427277   16 FSETkIDFEEIEKTLGITPTSKHKKGERRGAKTPPYKHDMWSLESGLKEEESLEKHLLALWGILKPHKEYLLTLKETAKI 95
Cdd:pfam14106   1 TGED-FDPDEITRLLGIEPTETYRKGDRIPDGSPKRKETSWILSTGLEESLDLEDHLDKLLDRLEPKAEKIRELAKKYNL 79

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 503427277   96 DVFCG---YRSNNHIAGVDLSHQALELFSELKIDFS 128
Cdd:pfam14106  80 EIFLSvviYIENGESPELHLSKEILRFLAELGAELD 115
 
Name Accession Description Interval E-value
DUF4279 pfam14106
Domain of unknown function (DUF4279); This family of proteins is functionally uncharacterized. ...
 16-128 1.19e-27

Domain of unknown function (DUF4279); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 134 and 145 amino acids in length.


Pssm-ID: 433720  Cd Length: 116  Bit Score: 98.50  E-value: 1.19e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503427277   16 FSETkIDFEEIEKTLGITPTSKHKKGERRGAKTPPYKHDMWSLESGLKEEESLEKHLLALWGILKPHKEYLLTLKETAKI 95
Cdd:pfam14106   1 TGED-FDPDEITRLLGIEPTETYRKGDRIPDGSPKRKETSWILSTGLEESLDLEDHLDKLLDRLEPKAEKIRELAKKYNL 79

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 503427277   96 DVFCG---YRSNNHIAGVDLSHQALELFSELKIDFS 128
Cdd:pfam14106  80 EIFLSvviYIENGESPELHLSKEILRFLAELGAELD 115
 
Name Accession Description Interval E-value
DUF4279 pfam14106
Domain of unknown function (DUF4279); This family of proteins is functionally uncharacterized. ...
 16-128 1.19e-27

Domain of unknown function (DUF4279); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 134 and 145 amino acids in length.


Pssm-ID: 433720  Cd Length: 116  Bit Score: 98.50  E-value: 1.19e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503427277   16 FSETkIDFEEIEKTLGITPTSKHKKGERRGAKTPPYKHDMWSLESGLKEEESLEKHLLALWGILKPHKEYLLTLKETAKI 95
Cdd:pfam14106   1 TGED-FDPDEITRLLGIEPTETYRKGDRIPDGSPKRKETSWILSTGLEESLDLEDHLDKLLDRLEPKAEKIRELAKKYNL 79

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 503427277   96 DVFCG---YRSNNHIAGVDLSHQALELFSELKIDFS 128
Cdd:pfam14106  80 EIFLSvviYIENGESPELHLSKEILRFLAELGAELD 115
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH