NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|503473400|ref|WP_013708061|]
View 

ATP synthase F1 subunit epsilon [Coriobacterium glomerans]

Protein Classification

FoF1 ATP synthase subunit delta/epsilon( domain architecture ID 10187353)

The FoF1 ATP synthase subunit delta/epsilon is a component of the F1-complex catalytic core of the F-type ATPase, which synthesizes ATP from ADP in the presence of a proton gradient across the membrane

Gene Ontology:  GO:0015986|GO:0046933|GO:0045261
PubMed:  12745923|15282184
SCOP:  4004011

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
F1-ATPase_delta cd12152
mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, ...
 1-115 1.29e-24

mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta, and epsilon subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain. In bacteria, which is lacking a eukaryotic epsilon subunit homolog, this subunit is called the epsilon subunit.


:

Pssm-ID: 213395 [Multi-domain]  Cd Length: 123  Bit Score: 90.65  E-value: 1.29e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503473400   1 MRIRIVGPEMLIYEGDAAFVAVPASDGEIGVLPSHSNEIATIRAGYVRVSDEtmGRIDHTFAVLSGYVEIADDAIIVLAD 80
Cdd:cd12152    1 LKLEIVTPERVFFSGEVESVVLPGTEGEFGILPGHAPLVTALKPGVLRIRDE--DGEEKYFAVSGGFLEVTPNRVTILAD 78

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 503473400  81 RAVDLATVDKDDVSAHLRDFEDQLDGLESDDAHRA 115
Cdd:cd12152   79 EAERPEDIDVERAEEALERAEERLAQAKDEREKAR 113
 
Name Accession Description Interval E-value
F1-ATPase_delta cd12152
mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, ...
 1-115 1.29e-24

mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta, and epsilon subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain. In bacteria, which is lacking a eukaryotic epsilon subunit homolog, this subunit is called the epsilon subunit.


Pssm-ID: 213395 [Multi-domain]  Cd Length: 123  Bit Score: 90.65  E-value: 1.29e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503473400   1 MRIRIVGPEMLIYEGDAAFVAVPASDGEIGVLPSHSNEIATIRAGYVRVSDEtmGRIDHTFAVLSGYVEIADDAIIVLAD 80
Cdd:cd12152    1 LKLEIVTPERVFFSGEVESVVLPGTEGEFGILPGHAPLVTALKPGVLRIRDE--DGEEKYFAVSGGFLEVTPNRVTILAD 78

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 503473400  81 RAVDLATVDKDDVSAHLRDFEDQLDGLESDDAHRA 115
Cdd:cd12152   79 EAERPEDIDVERAEEALERAEERLAQAKDEREKAR 113
AtpC COG0355
FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP ...
 1-114 3.62e-24

FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP synthase, epsilon subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440124 [Multi-domain]  Cd Length: 131  Bit Score: 89.86  E-value: 3.62e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503473400   1 MRIRIVGPEMLIYEGDAAFVAVPASDGEIGVLPSHSNEIATIRAGYVRVSDEtmGRIDHTFAVLSGYVEIADDAIIVLAD 80
Cdd:COG0355    1 LKLEIVTPERVLFSGEVESVVAPGAEGEFGILPGHAPLLTALKPGVVRIRTE--DGEEEYFAVSGGFLEVQPNKVTILAD 78

                         90       100       110
                 ....*....|....*....|....*....|....
gi 503473400  81 RAVDLATVDKDDVSAHLRDFEDQLDGLESDDAHR 114
Cdd:COG0355   79 TAERAEDIDVERAEEAKERAEERLEEAKDDIDYA 112
atpC PRK00571
F0F1 ATP synthase subunit epsilon; Validated
 1-115 1.20e-20

F0F1 ATP synthase subunit epsilon; Validated


Pssm-ID: 234796 [Multi-domain]  Cd Length: 135  Bit Score: 80.96  E-value: 1.20e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503473400   1 MRIRIVGPEMLIYEGDAAFVAVPASDGEIGVLPSHSNEIATIRAGYVRVsdETMGRIDHTFAVLSGYVEIADDAIIVLAD 80
Cdd:PRK00571   4 LTVDIVSPEGLIYSGEVEEVVVPGTEGELGILPGHAPLLTALKPGVVRI--KKDDGEEEVIAVSGGFLEVQPDKVTVLAD 81

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 503473400  81 RAVDLATVDKDDVSAHLRDFEDQLDGLESD-DAHRA 115
Cdd:PRK00571  82 SAERADDIDEARAEEAKERAEEALENKHDDvDYARA 117
ATP-synt_DE_N pfam02823
ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These ...
 1-82 4.96e-20

ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. The subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensitive subunit, OSCP (pfam00213).


Pssm-ID: 460714 [Multi-domain]  Cd Length: 80  Bit Score: 77.86  E-value: 4.96e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503473400    1 MRIRIVGPEMLIYEGDAAFVAVPASDGEIGVLPSHSNEIATIRAGYVRVSDEtmGRIDHTFAVLSGYVEIADDAIIVLAD 80
Cdd:pfam02823   1 LKLEIVTPERVVFSGEVEMVVAPGAEGELGILPGHAPLLTALKPGVLRIKTE--DGEEEYIAVSGGFLEVQPNKVTILAD 78


                  ..
gi 503473400   81 RA 82
Cdd:pfam02823  79 SA 80
ATP_synt_epsi TIGR01216
ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five ...
 1-122 5.60e-20

ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273506 [Multi-domain]  Cd Length: 130  Bit Score: 79.22  E-value: 5.60e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503473400    1 MRIRIVGPEMLIYEGDAAFVAVPASDGEIGVLPSHSNEIATIRAGYVRVsdETMGRIDHTFAVLSGYVEIADDAIIVLAD 80
Cdd:TIGR01216   2 LKLEIVTPEGEIYSGEVESVILPGSEGELGILPGHAPLITALKPGVVRI--RKLGDDWEHIAVSGGFAEVQPDKVTILAD 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 503473400   81 RAVDLATVDKDDVSAHLRDFEDQLDGlESDDAHRAYLYNKIS 122
Cdd:TIGR01216  80 GAVFADDIDEAEAEKALEAAEKLLES-AEDDKDLAEALLKLK 120
 
Name Accession Description Interval E-value
F1-ATPase_delta cd12152
mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, ...
 1-115 1.29e-24

mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta, and epsilon subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain. In bacteria, which is lacking a eukaryotic epsilon subunit homolog, this subunit is called the epsilon subunit.


Pssm-ID: 213395 [Multi-domain]  Cd Length: 123  Bit Score: 90.65  E-value: 1.29e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503473400   1 MRIRIVGPEMLIYEGDAAFVAVPASDGEIGVLPSHSNEIATIRAGYVRVSDEtmGRIDHTFAVLSGYVEIADDAIIVLAD 80
Cdd:cd12152    1 LKLEIVTPERVFFSGEVESVVLPGTEGEFGILPGHAPLVTALKPGVLRIRDE--DGEEKYFAVSGGFLEVTPNRVTILAD 78

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 503473400  81 RAVDLATVDKDDVSAHLRDFEDQLDGLESDDAHRA 115
Cdd:cd12152   79 EAERPEDIDVERAEEALERAEERLAQAKDEREKAR 113
AtpC COG0355
FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP ...
 1-114 3.62e-24

FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP synthase, epsilon subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440124 [Multi-domain]  Cd Length: 131  Bit Score: 89.86  E-value: 3.62e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503473400   1 MRIRIVGPEMLIYEGDAAFVAVPASDGEIGVLPSHSNEIATIRAGYVRVSDEtmGRIDHTFAVLSGYVEIADDAIIVLAD 80
Cdd:COG0355    1 LKLEIVTPERVLFSGEVESVVAPGAEGEFGILPGHAPLLTALKPGVVRIRTE--DGEEEYFAVSGGFLEVQPNKVTILAD 78

                         90       100       110
                 ....*....|....*....|....*....|....
gi 503473400  81 RAVDLATVDKDDVSAHLRDFEDQLDGLESDDAHR 114
Cdd:COG0355   79 TAERAEDIDVERAEEAKERAEERLEEAKDDIDYA 112
atpC PRK00571
F0F1 ATP synthase subunit epsilon; Validated
 1-115 1.20e-20

F0F1 ATP synthase subunit epsilon; Validated


Pssm-ID: 234796 [Multi-domain]  Cd Length: 135  Bit Score: 80.96  E-value: 1.20e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503473400   1 MRIRIVGPEMLIYEGDAAFVAVPASDGEIGVLPSHSNEIATIRAGYVRVsdETMGRIDHTFAVLSGYVEIADDAIIVLAD 80
Cdd:PRK00571   4 LTVDIVSPEGLIYSGEVEEVVVPGTEGELGILPGHAPLLTALKPGVVRI--KKDDGEEEVIAVSGGFLEVQPDKVTVLAD 81

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 503473400  81 RAVDLATVDKDDVSAHLRDFEDQLDGLESD-DAHRA 115
Cdd:PRK00571  82 SAERADDIDEARAEEAKERAEEALENKHDDvDYARA 117
ATP-synt_DE_N pfam02823
ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These ...
 1-82 4.96e-20

ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. The subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensitive subunit, OSCP (pfam00213).


Pssm-ID: 460714 [Multi-domain]  Cd Length: 80  Bit Score: 77.86  E-value: 4.96e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503473400    1 MRIRIVGPEMLIYEGDAAFVAVPASDGEIGVLPSHSNEIATIRAGYVRVSDEtmGRIDHTFAVLSGYVEIADDAIIVLAD 80
Cdd:pfam02823   1 LKLEIVTPERVVFSGEVEMVVAPGAEGELGILPGHAPLLTALKPGVLRIKTE--DGEEEYIAVSGGFLEVQPNKVTILAD 78


                  ..
gi 503473400   81 RA 82
Cdd:pfam02823  79 SA 80
ATP_synt_epsi TIGR01216
ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five ...
 1-122 5.60e-20

ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273506 [Multi-domain]  Cd Length: 130  Bit Score: 79.22  E-value: 5.60e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503473400    1 MRIRIVGPEMLIYEGDAAFVAVPASDGEIGVLPSHSNEIATIRAGYVRVsdETMGRIDHTFAVLSGYVEIADDAIIVLAD 80
Cdd:TIGR01216   2 LKLEIVTPEGEIYSGEVESVILPGSEGELGILPGHAPLITALKPGVVRI--RKLGDDWEHIAVSGGFAEVQPDKVTILAD 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 503473400   81 RAVDLATVDKDDVSAHLRDFEDQLDGlESDDAHRAYLYNKIS 122
Cdd:TIGR01216  80 GAVFADDIDEAEAEKALEAAEKLLES-AEDDKDLAEALLKLK 120
atpC PRK13448
F0F1 ATP synthase subunit epsilon; Provisional
 5-115 1.84e-15

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 139579 [Multi-domain]  Cd Length: 135  Bit Score: 67.49  E-value: 1.84e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503473400   5 IVGPEMLIYEGDAAFVAVPASDGEIGVLPSHSNEIATIRAGYVRVsdeTMGRIDHTFAVLSGYVEIADDAIIVLADRAVD 84
Cdd:PRK13448   8 LVSPEKLAFSGEVDQVDIPGVEGDFGVLAGHAPVVAVIRPGILTV---TAGGNQQKIVVLGGLAEVSEKGLTVLADVATS 84

                         90       100       110
                 ....*....|....*....|....*....|.
gi 503473400  85 LATVDKDDVSAHLRDFEDQLDGLESDDAHRA 115
Cdd:PRK13448  85 VADLDLAQFAATIAEMEAQLAGKVGDELDRA 115
atpC PRK13446
F0F1 ATP synthase subunit epsilon; Provisional
 1-113 3.37e-12

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 184056 [Multi-domain]  Cd Length: 136  Bit Score: 59.20  E-value: 3.37e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503473400   1 MRIRIVGPEMLIYEGDAAFVAVPASDGEIGVLPSHSNEIATIRAGYVRVSDEtmGRIDHTFaVLSGYVEIADDAIIVLAD 80
Cdd:PRK13446   5 LKLEIVTPEKKVLSEEVDEVGAPGVLGEFGVLPGHAPFLTALKIGELTYKKG--GKTHYVA-VNGGFAEVSNNKVTVLAE 81

                         90       100       110
                 ....*....|....*....|....*....|...
gi 503473400  81 RAVDLATVDKDDVSAHLRDFEDQLDGLESDDAH 113
Cdd:PRK13446  82 TAERAEEIDVERARAALERAEQRLKKLTPEDDS 114
atpC PRK14736
F0F1 ATP synthase subunit epsilon; Provisional
 5-115 4.07e-12

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 173198 [Multi-domain]  Cd Length: 133  Bit Score: 59.04  E-value: 4.07e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503473400   5 IVGPEMLIYEGDAAFVAVPASDGEIGVLPSHSNEIATIRAGYVRVSD-ETMGRidhTFAVLSGYVEIADDAIIVLADRAV 83
Cdd:PRK14736   8 LVGPERTLYSGEVEAVQLPGSEGEMTVLPGHAPVLTTLKVGVITVTEtTGNGK---RIYVRGGFAEIGPTSVTVLAERAA 84

                         90       100       110
                 ....*....|....*....|....*....|..
gi 503473400  84 DLATVDKDDVSAHLRDFEDQLDGLESDDAHRA 115
Cdd:PRK14736  85 PVEELTPEMIDREIEAVEMERDATQDLDKREA 116
atpC PRK13442
F0F1 ATP synthase subunit epsilon; Provisional
 1-82 6.42e-12

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 184055 [Multi-domain]  Cd Length: 89  Bit Score: 57.34  E-value: 6.42e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503473400   1 MRIRIVGPEMLIYEGDAAFVAVPASDGEIGVLPSHSNEIATIRAGYVRVSDETMGRIdhTFAVLSGYVEIADDAIIVLAD 80
Cdd:PRK13442   6 LHVNIVAADRPVWSGEATMVVARTTEGDIGILPGHEPLLGVLESGTVTVVTPGGERI--SAAVDGGFISFDSNKLTVLAE 83


                 ..
gi 503473400  81 RA 82
Cdd:PRK13442  84 RA 85
atpC PRK13449
ATP synthase F1 subunit epsilon;
5-86 1.01e-11

ATP synthase F1 subunit epsilon;


Pssm-ID: 184058 [Multi-domain]  Cd Length: 88  Bit Score: 56.70  E-value: 1.01e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503473400   5 IVGPEMLIYEGDAAFVAVPASDGEIGVLPSHSNEIATIRAGYVRVSdETMGRIDHTFAVLSGYVEIADDAIIVLADRAVD 84
Cdd:PRK13449   8 LVTPERLLRSGEVDMVVVPGTEGDFGVLAGHAPFMTTLREGEVTVY-SSDGAAPEVFHVQGGFAEVNEKGLTILAEHAVE 86


                 ..
gi 503473400  85 LA 86
Cdd:PRK13449  87 AA 88
atpC PRK01474
F0F1 ATP synthase subunit epsilon; Validated
 1-104 1.35e-11

F0F1 ATP synthase subunit epsilon; Validated


Pssm-ID: 100879  Cd Length: 112  Bit Score: 57.19  E-value: 1.35e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503473400   1 MRIRIVGPEMLIYEGDAAFVAVPASDGEIGVLPSHSNEIATIRAGYVRVSDETMGRIDHTFAVLSGYVEIADDAIIVLAD 80
Cdd:PRK01474   5 ILVKIITPLSIAFEKQAKMVTMPGEEGMFGVLPSHVPMIVSLKAGLVQVYIDDMHKSENTYLISGGVTEVTGNYINIATE 84

                         90       100
                 ....*....|....*....|....
gi 503473400  81 RAVDLATVDKDDVSAHLRDFEDQL 104
Cdd:PRK01474  85 TAINVTNLSEAEIATKLLDLQKTL 108
atpC PRK13443
F0F1 ATP synthase subunit epsilon; Provisional
 1-113 1.09e-09

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 237388 [Multi-domain]  Cd Length: 136  Bit Score: 52.62  E-value: 1.09e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503473400   1 MRIRIVGPEMLIYEGDAAFVAVPASDGEIGVLPSHSNEIATIRAGYVRVsDETMGRIDhtFAVLSGYVEIADDAIIVLAD 80
Cdd:PRK13443   5 LQFDLVSPERRLASFQATAVQIPGADGDMTAMEGHAPTITTLRPGILRA-HGPSGTQE--YAVTGGFAEINATSISVLAE 81

                         90       100       110
                 ....*....|....*....|....*....|...
gi 503473400  81 RAVDLATVDKDDVSAHLRDFEDQLDGLESDDAH 113
Cdd:PRK13443  82 KAIPVEELTGAVLDEFIAEARELASVALPENEP 114
atpC PRK13444
F0F1 ATP synthase subunit epsilon; Provisional
 1-80 8.36e-09

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 139576 [Multi-domain]  Cd Length: 127  Bit Score: 50.26  E-value: 8.36e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503473400   1 MRIRIVGPEMLIYEGDAAFVAVPASDGEIGVLPSHSNEIATIRAGYVRV-SDETMGRIdhtfAVLSGYVEIADDAIIVLA 79
Cdd:PRK13444   6 LTVSVISPEKILYKGEVDSLIVPGSEGFFGILPNHAPLVATLGIGLLEIrKGEKLKRI----SVEGGFCEVKDNQISILT 81


                 .
gi 503473400  80 D 80
Cdd:PRK13444  82 D 82
atpE CHL00063
ATP synthase CF1 epsilon subunit
 1-89 4.35e-08

ATP synthase CF1 epsilon subunit


Pssm-ID: 214351 [Multi-domain]  Cd Length: 134  Bit Score: 48.32  E-value: 4.35e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503473400   1 MRIRIVGPEMLIYEGDAAFVAVPASDGEIGVLPSHSNEIATIRAGYVRVsdetmgRIDH---TFAVLSGYVEIADDAIIV 77
Cdd:CHL00063   3 LNLRVLTPNRIVWDSEVEEIILPTNSGQIGVLPNHAPIATALDIGVLRI------RLNDqwlTMALMGGFARIGNNEITI 76

                         90
                 ....*....|..
gi 503473400  78 LADRAVDLATVD 89
Cdd:CHL00063  77 LVNDAEKGSDID 88
atpC PRK13450
F0F1 ATP synthase subunit epsilon; Provisional
 1-117 3.97e-05

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 184059 [Multi-domain]  Cd Length: 132  Bit Score: 40.52  E-value: 3.97e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503473400   1 MRIRIVGPEMLIYEGDAAFVAVPASDGEIGVLPSHSNEIATIRAGYVRVSDETmGRIDHTFAVlSGYVEIADDAIIVLAD 80
Cdd:PRK13450   4 IKLTILTPEKNFYIGEVKEVITEGLDGDIAILPNHVPLITYLKPTITKIIDEN-GEKKKIFTS-SGVLKVENNEVYILCD 81

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 503473400  81 RAVDLATVDKDDVSAHLRDFEDQLDGLESDDAHRAYL 117
Cdd:PRK13450  82 ASEWPEEIDIKRAENAKKRAEERLRKKDEIDVKRAEL 118
atpC PRK13451
F0F1 ATP synthase subunit epsilon; Provisional
 1-53 1.01e-04

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 172059  Cd Length: 101  Bit Score: 38.61  E-value: 1.01e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 503473400   1 MRIRIVGPEMLIYEGDAAFVAVPASDGEIGVLPSHSNEIATIRAGYVRVSDET 53
Cdd:PRK13451   1 MKVKIVTPYGIVYDRESDFVSFRTVEGEMGILPRRAPIIAKLSVCDVKIKSGD 53
atpC PRK14735
F0F1 ATP synthase subunit epsilon; Provisional
 1-82 2.10e-04

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 173197 [Multi-domain]  Cd Length: 139  Bit Score: 38.44  E-value: 2.10e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503473400   1 MRIRIVGPEMLIYEGDAAFVAVPASDGEIGVLPSHSNEIATIRAGYVrvsDETMGRIDHTFAVLSGYVEIADDAIIVLAD 80
Cdd:PRK14735   3 IHLEIVTAERVVLSDDVDMISAPTKDGRVGILPRHAPLLTILEPGEL---DIVKNGVRTPFAISGGFMEVLPHRVTILAD 79


                 ..
gi 503473400  81 RA 82
Cdd:PRK14735  80 TA 81
atpC PRK13452
F0F1 ATP synthase subunit epsilon; Provisional
 1-99 1.89e-03

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 106409 [Multi-domain]  Cd Length: 145  Bit Score: 36.26  E-value: 1.89e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503473400   1 MRIRIVGPEMLIYEGDAAFVAVPASDGEIGVLPSHSNEIATIRAGYVRVSDetmGRIDHTFAVLSGYVEIADDAIIVLAD 80
Cdd:PRK13452   6 LKVDVVSPLGSVFKGEADMVSLRGSAGEMGIAYGHTELLSTLPAGVVNVRK---DQHTDVLYVSGGIVEVTPTRVTIMVD 82

                         90       100
                 ....*....|....*....|..
gi 503473400  81 ---RAVDLATVDKDDVSAHLRD 99
Cdd:PRK13452  83 dmeRAENLNQAEAEKARARAKE 104
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH