|
Name |
Accession |
Description |
Interval |
E-value |
| transpos_IS6 |
NF033587 |
IS6 family transposase; |
109-315 |
3.52e-65 |
|
IS6 family transposase;
Pssm-ID: 411209 [Multi-domain] Cd Length: 203 Bit Score: 204.73 E-value: 3.52e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503486352 109 FKGMRFPIHIILMALDLYFLNESSTRRISQYLfRTFNVKVSHVTIASWTKKvLSAYFKLKSDNLFYNIDLSdsdeWHADE 188
Cdd:NF033587 1 FKRERFPPEIILLAVRLYLRGPLSLRDVEEIL-AERGVSVSHSTIYRWVHK-YAPQLAKRLRRRKPRPPDS----WAVDE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503486352 189 TVVFINGKKHYLWLVIDSESrLIISYHLSPYRDAKQAFSLFNDAKK--LGSPRAIVTDRLPSYNIPIKSVFQD-TLHIKV 265
Cdd:NF033587 75 TVIKINGKWYYLYRAVDKEG-ETLDFLLSPRRDTDAAKRFLRKLLKkhDGSPRVILTDKAPSYPAALRRLGLEgRLPRRI 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 503486352 266 QSFKDDISNNIIESFNKTFKSWYKGLKGFNSFDSANKLISVFIFHYNFIR 315
Cdd:NF033587 154 EHRQRKYLNNLIEQDHRRTKRFINSMLGFKSFRTARRTLAGFEAMYNLRK 203
|
|
| Rve |
COG3316 |
Transposase (or an inactivated derivative), DDE domain [Mobilome: prophages, transposons]; |
106-328 |
7.75e-64 |
|
Transposase (or an inactivated derivative), DDE domain [Mobilome: prophages, transposons];
Pssm-ID: 442545 [Multi-domain] Cd Length: 235 Bit Score: 202.44 E-value: 7.75e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503486352 106 KLNFKGMRFPIHIILMALDLYFLNESSTRRISQyLFRTFNVKVSHVTIASWTKKvlsayFKLKSDNLFYNIDLSDSDEWH 185
Cdd:COG3316 1 MVDFKGRRFPPEIILLAVRLYLRYGLSLRDVEE-MLAERGVDVSHSTIYRWVQK-----FAPLIAKRLRRRRPPLSDSWH 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503486352 186 ADETVVFINGKKHYLWLVIDSESRlIISYHLSPYRDAKQAFSLFNDA-KKLG-SPRAIVTDRLPSYNIPIKSVFQDTL-- 261
Cdd:COG3316 75 VDETYIKIKGKWHYLYRAVDAEGR-ILDFLLSPRRDTKAAKRFLRKAlKKYGlKPRVIVTDKLPSYGAALRELKPEGGlg 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 503486352 262 --HIKVQSfkddiSNNIIESFNKTFKSWYKGLKGFNSFDSANKLISVFIFHYNFIRNHSSLRSLTPAEV 328
Cdd:COG3316 154 veHRQVKG-----LNNRIERDHRTLKRRERPMRGFKSFRTAQRFLSGFEAYYNFRRPHRSLNGATPARV 217
|
|
| DDE_Tnp_IS240 |
pfam13610 |
DDE domain; This DDE domain is found in a wide variety of transposases including those found ... |
184-317 |
2.34e-22 |
|
DDE domain; This DDE domain is found in a wide variety of transposases including those found in IS240, IS26, IS6100 and IS26.
Pssm-ID: 433347 [Multi-domain] Cd Length: 138 Bit Score: 91.27 E-value: 2.34e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503486352 184 WHADETVVFINGKKHYLWLVIDSESRlIISYHLSPYRDAKQAFSLFNDAKK--LGSPRAIVTDRLPSYNIPIKSVF-QDT 260
Cdd:pfam13610 3 WRVDETYVKVKGKWHYVYRAVDKEGN-TLDFYVSKRRDTDAAKAFLRRALKnyKGRPEEIVTDKAGAYLSAIKELKpSGL 81
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 503486352 261 LHIKVQSFKDDISNNIIESFNKTFKSWYKGLKGFNSFDSANKLISVFIFHYNFIRNH 317
Cdd:pfam13610 82 LLDDIRHVTVKYLNNRIESDHRPLKKRLRPMRGFKSFKSARKTIAGFEVVHNLRKGH 138
|
|
| transpos_IS3 |
NF033516 |
IS3 family transposase; |
184-328 |
9.18e-11 |
|
IS3 family transposase;
Pssm-ID: 468052 [Multi-domain] Cd Length: 369 Bit Score: 62.20 E-value: 9.18e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503486352 184 WHADETVVFINGKKHYLWLVIDSESRLIISYHLSPYRDAKQAFSLFNDA-KKLGSPRA--IVTDRLPSYnipIKSVFQDT 260
Cdd:NF033516 219 WVTDITYIRTAEGWLYLAVVLDLFSREIVGWSVSTSMSAELVLDALEMAiEWRGKPEGliLHSDNGSQY---TSKAYREW 295
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 503486352 261 L---HIKvQSFKD-----DisNNIIESFNKTFKSWYKGLKGFNSFDSANKLISVFIFHYNFIRNHSSLRSLTPAEV 328
Cdd:NF033516 296 LkehGIT-QSMSRpgncwD--NAVAESFFGTLKRECLYRRRFRTLEEARQAIEEYIEFYNHERPHSSLGYLTPAEF 368
|
|
| transpos_IS1 |
NF033558 |
IS1 family transposase; Proteins of this family are DDE transposases encoded by the IS1 family ... |
10-291 |
3.59e-10 |
|
IS1 family transposase; Proteins of this family are DDE transposases encoded by the IS1 family elements usually through a translational frameshift mechanism.
Pssm-ID: 468085 [Multi-domain] Cd Length: 199 Bit Score: 58.82 E-value: 3.59e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503486352 10 CPRCHSHNLYKFGKDKEGNQKYQCKECKRQFAPsampkerqlkdyprcpicnkgtfihhnysnyinyrcndkkcnhsffV 89
Cdd:NF033558 1 CPRCQSDNVVKNGKSVRGKQRYRCKDCGRQFQL----------------------------------------------D 34
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503486352 90 AKPTAIDPSsnttiqgklnfkgmrfpihIILMALDLYfLNESSTRRISqylfRTFNvkVSHVTIASWTKKVlsayfklkS 169
Cdd:NF033558 35 YEYRGYSEG-------------------TKEKILQLY-LNGMGFRAIA----RVLG--VSHNTVLRWLKKL--------G 80
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503486352 170 DNLFYNIDLSDSDEW---HADETVVFINGKK--HYLWLVIDSESRLIISYHLSPyRDAKQAFSLFNDAKKLGSpRAIVTD 244
Cdd:NF033558 81 PRQVTPEPLKPADIVlicELDELWTFVGNKKnkRWLWYAYDRKTKRILAYVFGD-RSAETFRKLWALLKPFKI-GFYCTD 158
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 503486352 245 RLPSYnipiKSVFQDTLHIKVQSFkddisNNIIESFNKTFKSWYKGL 291
Cdd:NF033558 159 HWKVY----AEFLPDEKHLVSKGE-----TQRIERENLTLRHRLARL 196
|
|
| InsA |
COG3677 |
Transposase InsA [Mobilome: prophages, transposons]; |
3-40 |
7.35e-09 |
|
Transposase InsA [Mobilome: prophages, transposons];
Pssm-ID: 442893 [Multi-domain] Cd Length: 241 Bit Score: 55.64 E-value: 7.35e-09
10 20 30
....*....|....*....|....*....|....*...
gi 503486352 3 KANKKITCPRCHSHNLYKFGKDKEGNQKYQCKECKRQF 40
Cdd:COG3677 12 RWPNGPVCPHCGSTRIVKNGKTRNGRQRYRCKDCGRTF 49
|
|
| transpos_IS481 |
NF033577 |
IS481 family transposase; null |
184-328 |
3.15e-07 |
|
IS481 family transposase; null
Pssm-ID: 468094 [Multi-domain] Cd Length: 283 Bit Score: 51.05 E-value: 3.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503486352 184 WHADETVV--FINGKKHYLWLVIDSESRLIisyHLSPYRDAK----QAFslFNDA-KKLGSP-RAIVTDRLPSYNIPiKS 255
Cdd:NF033577 131 WHIDIKKLgrIPDVGRLYLHTAIDDHSRFA---YAELYPDETaetaADF--LRRAfAEHGIPiRRVLTDNGSEFRSR-AH 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503486352 256 VFQDTL--------HIKVQSFKddiSNNIIESFNKTFKSWYKGLKGFNSFDSANKLISVFIFHYNFIRNHSSLRSLTPAE 327
Cdd:NF033577 205 GFELALaelgiehrRTRPYHPQ---TNGKVERFHRTLKDEFAYARPYESLAELQAALDEWLHHYNHHRPHSALGGKTPAE 281
|
.
gi 503486352 328 V 328
Cdd:NF033577 282 R 282
|
|
| Zn_Tnp_IS1 |
pfam03811 |
InsA N-terminal domain; This appears to be a short zinc binding domain found in IS1 InsA ... |
4-37 |
1.99e-05 |
|
InsA N-terminal domain; This appears to be a short zinc binding domain found in IS1 InsA family protein. It is found at the N-terminus of the protein and may be a DNA-binding domain.
Pssm-ID: 281762 [Multi-domain] Cd Length: 35 Bit Score: 41.04 E-value: 1.99e-05
10 20 30
....*....|....*....|....*....|....
gi 503486352 4 ANKKITCPRCHSHNLYKFGKDKEGNQKYQCKECK 37
Cdd:pfam03811 2 ASVSIHCPRCSSTDVYRHGKSTAGHQRFRCRHCR 35
|
|
| PHA02517 |
PHA02517 |
putative transposase OrfB; Reviewed |
184-344 |
6.59e-05 |
|
putative transposase OrfB; Reviewed
Pssm-ID: 222853 [Multi-domain] Cd Length: 277 Bit Score: 44.09 E-value: 6.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503486352 184 WHADETVVFINGKKHYLWLVIDSESRLIISYHLSPYRDAKQAFSLFNDA-KKLGSPRAIV--TDRLPSYNIPIKSVFQDT 260
Cdd:PHA02517 113 WVADFTYVSTWQGWVYVAFIIDVFARRIVGWRVSSSMDTDFVLDALEQAlWARGRPGGLIhhSDKGSQYVSLAYTQRLKE 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503486352 261 LHIK--VQSFKDDISNNIIESFNKTFKSWYKGLKGFNSFDSANKLISVFIFHYNFIRNHSSLRSLTPAEVSgINYSVKAK 338
Cdd:PHA02517 193 AGIRasTGSRGDSYDNAPAESINGLYKAEVIHRVSWKNREEVELATLEWVAWYNNRRLHERLGYTPPAEAE-KAYYASIG 271
|
....*.
gi 503486352 339 NNWLLA 344
Cdd:PHA02517 272 NNDVAA 277
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| transpos_IS6 |
NF033587 |
IS6 family transposase; |
109-315 |
3.52e-65 |
|
IS6 family transposase;
Pssm-ID: 411209 [Multi-domain] Cd Length: 203 Bit Score: 204.73 E-value: 3.52e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503486352 109 FKGMRFPIHIILMALDLYFLNESSTRRISQYLfRTFNVKVSHVTIASWTKKvLSAYFKLKSDNLFYNIDLSdsdeWHADE 188
Cdd:NF033587 1 FKRERFPPEIILLAVRLYLRGPLSLRDVEEIL-AERGVSVSHSTIYRWVHK-YAPQLAKRLRRRKPRPPDS----WAVDE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503486352 189 TVVFINGKKHYLWLVIDSESrLIISYHLSPYRDAKQAFSLFNDAKK--LGSPRAIVTDRLPSYNIPIKSVFQD-TLHIKV 265
Cdd:NF033587 75 TVIKINGKWYYLYRAVDKEG-ETLDFLLSPRRDTDAAKRFLRKLLKkhDGSPRVILTDKAPSYPAALRRLGLEgRLPRRI 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 503486352 266 QSFKDDISNNIIESFNKTFKSWYKGLKGFNSFDSANKLISVFIFHYNFIR 315
Cdd:NF033587 154 EHRQRKYLNNLIEQDHRRTKRFINSMLGFKSFRTARRTLAGFEAMYNLRK 203
|
|
| Rve |
COG3316 |
Transposase (or an inactivated derivative), DDE domain [Mobilome: prophages, transposons]; |
106-328 |
7.75e-64 |
|
Transposase (or an inactivated derivative), DDE domain [Mobilome: prophages, transposons];
Pssm-ID: 442545 [Multi-domain] Cd Length: 235 Bit Score: 202.44 E-value: 7.75e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503486352 106 KLNFKGMRFPIHIILMALDLYFLNESSTRRISQyLFRTFNVKVSHVTIASWTKKvlsayFKLKSDNLFYNIDLSDSDEWH 185
Cdd:COG3316 1 MVDFKGRRFPPEIILLAVRLYLRYGLSLRDVEE-MLAERGVDVSHSTIYRWVQK-----FAPLIAKRLRRRRPPLSDSWH 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503486352 186 ADETVVFINGKKHYLWLVIDSESRlIISYHLSPYRDAKQAFSLFNDA-KKLG-SPRAIVTDRLPSYNIPIKSVFQDTL-- 261
Cdd:COG3316 75 VDETYIKIKGKWHYLYRAVDAEGR-ILDFLLSPRRDTKAAKRFLRKAlKKYGlKPRVIVTDKLPSYGAALRELKPEGGlg 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 503486352 262 --HIKVQSfkddiSNNIIESFNKTFKSWYKGLKGFNSFDSANKLISVFIFHYNFIRNHSSLRSLTPAEV 328
Cdd:COG3316 154 veHRQVKG-----LNNRIERDHRTLKRRERPMRGFKSFRTAQRFLSGFEAYYNFRRPHRSLNGATPARV 217
|
|
| DDE_Tnp_IS240 |
pfam13610 |
DDE domain; This DDE domain is found in a wide variety of transposases including those found ... |
184-317 |
2.34e-22 |
|
DDE domain; This DDE domain is found in a wide variety of transposases including those found in IS240, IS26, IS6100 and IS26.
Pssm-ID: 433347 [Multi-domain] Cd Length: 138 Bit Score: 91.27 E-value: 2.34e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503486352 184 WHADETVVFINGKKHYLWLVIDSESRlIISYHLSPYRDAKQAFSLFNDAKK--LGSPRAIVTDRLPSYNIPIKSVF-QDT 260
Cdd:pfam13610 3 WRVDETYVKVKGKWHYVYRAVDKEGN-TLDFYVSKRRDTDAAKAFLRRALKnyKGRPEEIVTDKAGAYLSAIKELKpSGL 81
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 503486352 261 LHIKVQSFKDDISNNIIESFNKTFKSWYKGLKGFNSFDSANKLISVFIFHYNFIRNH 317
Cdd:pfam13610 82 LLDDIRHVTVKYLNNRIESDHRPLKKRLRPMRGFKSFKSARKTIAGFEVVHNLRKGH 138
|
|
| Tra5 |
COG2801 |
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons]; |
184-328 |
4.61e-18 |
|
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
Pssm-ID: 442053 [Multi-domain] Cd Length: 309 Bit Score: 83.28 E-value: 4.61e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503486352 184 WHADETVVFINGKKHYLWLVIDSESRLIISYHLSPYRDAKQAFSLFNDA---KKLGSPRAIVTDRLPSYnipIKSVFQDT 260
Cdd:COG2801 152 WVTDITYIPTAEGWLYLAAVIDLFSREIVGWSVSDSMDAELVVDALEMAierRGPPKPLILHSDNGSQY---TSKAYQEL 228
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 503486352 261 LH---IKvQSF--KDD-ISNNIIESFNKTFKSWYKGLKGFNSFDSANKLISVFIFHYNFIRNHSSLRSLTPAEV 328
Cdd:COG2801 229 LKklgIT-QSMsrPGNpQDNAFIESFFGTLKYELLYRRRFESLEEAREAIEEYIEFYNHERPHSSLGYLTPAEY 301
|
|
| transpos_IS3 |
NF033516 |
IS3 family transposase; |
184-328 |
9.18e-11 |
|
IS3 family transposase;
Pssm-ID: 468052 [Multi-domain] Cd Length: 369 Bit Score: 62.20 E-value: 9.18e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503486352 184 WHADETVVFINGKKHYLWLVIDSESRLIISYHLSPYRDAKQAFSLFNDA-KKLGSPRA--IVTDRLPSYnipIKSVFQDT 260
Cdd:NF033516 219 WVTDITYIRTAEGWLYLAVVLDLFSREIVGWSVSTSMSAELVLDALEMAiEWRGKPEGliLHSDNGSQY---TSKAYREW 295
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 503486352 261 L---HIKvQSFKD-----DisNNIIESFNKTFKSWYKGLKGFNSFDSANKLISVFIFHYNFIRNHSSLRSLTPAEV 328
Cdd:NF033516 296 LkehGIT-QSMSRpgncwD--NAVAESFFGTLKRECLYRRRFRTLEEARQAIEEYIEFYNHERPHSSLGYLTPAEF 368
|
|
| rve_3 |
pfam13683 |
Integrase core domain; |
274-325 |
2.23e-10 |
|
Integrase core domain;
Pssm-ID: 433402 [Multi-domain] Cd Length: 67 Bit Score: 56.07 E-value: 2.23e-10
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 503486352 274 NNIIESFNKTFKSWYKGLKGFNSFDSANKLISVFIFHYNFIRNHSSLRSLTP 325
Cdd:pfam13683 16 NGLVESFNGTLRDECLNEHLFSSLAEARALLAAWREDYNTERPHSSLGYRTP 67
|
|
| transpos_IS1 |
NF033558 |
IS1 family transposase; Proteins of this family are DDE transposases encoded by the IS1 family ... |
10-291 |
3.59e-10 |
|
IS1 family transposase; Proteins of this family are DDE transposases encoded by the IS1 family elements usually through a translational frameshift mechanism.
Pssm-ID: 468085 [Multi-domain] Cd Length: 199 Bit Score: 58.82 E-value: 3.59e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503486352 10 CPRCHSHNLYKFGKDKEGNQKYQCKECKRQFAPsampkerqlkdyprcpicnkgtfihhnysnyinyrcndkkcnhsffV 89
Cdd:NF033558 1 CPRCQSDNVVKNGKSVRGKQRYRCKDCGRQFQL----------------------------------------------D 34
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503486352 90 AKPTAIDPSsnttiqgklnfkgmrfpihIILMALDLYfLNESSTRRISqylfRTFNvkVSHVTIASWTKKVlsayfklkS 169
Cdd:NF033558 35 YEYRGYSEG-------------------TKEKILQLY-LNGMGFRAIA----RVLG--VSHNTVLRWLKKL--------G 80
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503486352 170 DNLFYNIDLSDSDEW---HADETVVFINGKK--HYLWLVIDSESRLIISYHLSPyRDAKQAFSLFNDAKKLGSpRAIVTD 244
Cdd:NF033558 81 PRQVTPEPLKPADIVlicELDELWTFVGNKKnkRWLWYAYDRKTKRILAYVFGD-RSAETFRKLWALLKPFKI-GFYCTD 158
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 503486352 245 RLPSYnipiKSVFQDTLHIKVQSFkddisNNIIESFNKTFKSWYKGL 291
Cdd:NF033558 159 HWKVY----AEFLPDEKHLVSKGE-----TQRIERENLTLRHRLARL 196
|
|
| InsA |
COG3677 |
Transposase InsA [Mobilome: prophages, transposons]; |
3-40 |
7.35e-09 |
|
Transposase InsA [Mobilome: prophages, transposons];
Pssm-ID: 442893 [Multi-domain] Cd Length: 241 Bit Score: 55.64 E-value: 7.35e-09
10 20 30
....*....|....*....|....*....|....*...
gi 503486352 3 KANKKITCPRCHSHNLYKFGKDKEGNQKYQCKECKRQF 40
Cdd:COG3677 12 RWPNGPVCPHCGSTRIVKNGKTRNGRQRYRCKDCGRTF 49
|
|
| transpos_IS481 |
NF033577 |
IS481 family transposase; null |
184-328 |
3.15e-07 |
|
IS481 family transposase; null
Pssm-ID: 468094 [Multi-domain] Cd Length: 283 Bit Score: 51.05 E-value: 3.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503486352 184 WHADETVV--FINGKKHYLWLVIDSESRLIisyHLSPYRDAK----QAFslFNDA-KKLGSP-RAIVTDRLPSYNIPiKS 255
Cdd:NF033577 131 WHIDIKKLgrIPDVGRLYLHTAIDDHSRFA---YAELYPDETaetaADF--LRRAfAEHGIPiRRVLTDNGSEFRSR-AH 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503486352 256 VFQDTL--------HIKVQSFKddiSNNIIESFNKTFKSWYKGLKGFNSFDSANKLISVFIFHYNFIRNHSSLRSLTPAE 327
Cdd:NF033577 205 GFELALaelgiehrRTRPYHPQ---TNGKVERFHRTLKDEFAYARPYESLAELQAALDEWLHHYNHHRPHSALGGKTPAE 281
|
.
gi 503486352 328 V 328
Cdd:NF033577 282 R 282
|
|
| Zn_Tnp_IS1 |
pfam03811 |
InsA N-terminal domain; This appears to be a short zinc binding domain found in IS1 InsA ... |
4-37 |
1.99e-05 |
|
InsA N-terminal domain; This appears to be a short zinc binding domain found in IS1 InsA family protein. It is found at the N-terminus of the protein and may be a DNA-binding domain.
Pssm-ID: 281762 [Multi-domain] Cd Length: 35 Bit Score: 41.04 E-value: 1.99e-05
10 20 30
....*....|....*....|....*....|....
gi 503486352 4 ANKKITCPRCHSHNLYKFGKDKEGNQKYQCKECK 37
Cdd:pfam03811 2 ASVSIHCPRCSSTDVYRHGKSTAGHQRFRCRHCR 35
|
|
| rve |
pfam00665 |
Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into ... |
184-249 |
3.23e-05 |
|
Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.
Pssm-ID: 459897 [Multi-domain] Cd Length: 98 Bit Score: 42.30 E-value: 3.23e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503486352 184 WHADETVVFINGKKHYLWL--VIDSESRLIISYHLSPYRDAKQAFSLFNDAKKL--GSPRAIVTDRLPSY 249
Cdd:pfam00665 5 WQGDFTYIRIPGGGGKLYLlvIVDDFSREILAWALSSEMDAELVLDALERAIAFrgGVPLIIHSDNGSEY 74
|
|
| PHA02517 |
PHA02517 |
putative transposase OrfB; Reviewed |
184-344 |
6.59e-05 |
|
putative transposase OrfB; Reviewed
Pssm-ID: 222853 [Multi-domain] Cd Length: 277 Bit Score: 44.09 E-value: 6.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503486352 184 WHADETVVFINGKKHYLWLVIDSESRLIISYHLSPYRDAKQAFSLFNDA-KKLGSPRAIV--TDRLPSYNIPIKSVFQDT 260
Cdd:PHA02517 113 WVADFTYVSTWQGWVYVAFIIDVFARRIVGWRVSSSMDTDFVLDALEQAlWARGRPGGLIhhSDKGSQYVSLAYTQRLKE 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503486352 261 LHIK--VQSFKDDISNNIIESFNKTFKSWYKGLKGFNSFDSANKLISVFIFHYNFIRNHSSLRSLTPAEVSgINYSVKAK 338
Cdd:PHA02517 193 AGIRasTGSRGDSYDNAPAESINGLYKAEVIHRVSWKNREEVELATLEWVAWYNNRRLHERLGYTPPAEAE-KAYYASIG 271
|
....*.
gi 503486352 339 NNWLLA 344
Cdd:PHA02517 272 NNDVAA 277
|
|
| DDE_Tnp_IS66 |
pfam03050 |
Transposase IS66 family; Transposase proteins are necessary for efficient DNA transposition. ... |
134-250 |
2.44e-04 |
|
Transposase IS66 family; Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.
Pssm-ID: 427113 [Multi-domain] Cd Length: 281 Bit Score: 42.24 E-value: 2.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503486352 134 RRISQyLFRTFNVKVSHVTIASWTKKVlsayfklkSDNL--FYNI---DLSDSDEWHADETVVFI------NGKKHYLWL 202
Cdd:pfam03050 24 YRQED-ILARLGVELSRGTLANWVGRA--------AELLepLVDAlraALLESPVIHADETPLRVlkpgrgKGKKGWLWV 94
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 503486352 203 VI-DSESRLIISYHLSPYRDAKQAFSLFNDAKklgspRAIVTDRLPSYN 250
Cdd:pfam03050 95 YVtDDRPPPAVLFHYHPSRGGEHPQALLGGFR-----GVLQTDGYAGYN 138
|
|
| |
