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Conserved domains on  [gi|503492094|ref|WP_013726755|]
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DUF3887 domain-containing protein [Clostridium botulinum]

Protein Classification

DUF3887 domain-containing protein( domain architecture ID 10586612)

DUF3887 domain-containing protein may belong to the nuclear transport factor 2 (NTF2) superfamily, similar to Ruminococcus gnavus DUF3887 family protein RUMGNA_01855

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3887 pfam13026
Protein of unknown function (DUF3887); This domain family is found in bacteria and archaea, ...
 38-126 3.10e-13

Protein of unknown function (DUF3887); This domain family is found in bacteria and archaea, and is approximately 90 amino acids in length.


:

Pssm-ID: 432940  Cd Length: 91  Bit Score: 60.75  E-value: 3.10e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503492094   38 SEKLIDNLNKEKFDDVIGIMDNSIKAQITVDKLKEVMESFK-KLRKFDSITKMIFQEK-NGIATVVSIAKYENGNIQFTL 115
Cdd:pfam13026   1 AEEFIELLNSGDFEEAYDMFSEDMKEALSEETLEAAWKQLVeQLGEFVSIEGYEVEETgQEYAVVIVVAKFEKGDVDFTI 80

                          90
                  ....*....|.
gi 503492094  116 SYNKNMQLCGL 126
Cdd:pfam13026  81 AFDEDMKIAGF 91
YifL COG5567
Small periplasmic lipoprotein YifL (function unknown) [Function unknown];
1-23 6.91e-04

Small periplasmic lipoprotein YifL (function unknown) [Function unknown];


:

Pssm-ID: 444309  Cd Length: 43  Bit Score: 35.27  E-value: 6.91e-04
                         10        20
                 ....*....|....*....|...
gi 503492094   1 MKRVFKFLIAMLCITVLGGCGAK 23
Cdd:COG5567    1 MKKLLRLLLLLLLLFTLAGCGLK 23
 
Name Accession Description Interval E-value
DUF3887 pfam13026
Protein of unknown function (DUF3887); This domain family is found in bacteria and archaea, ...
 38-126 3.10e-13

Protein of unknown function (DUF3887); This domain family is found in bacteria and archaea, and is approximately 90 amino acids in length.


Pssm-ID: 432940  Cd Length: 91  Bit Score: 60.75  E-value: 3.10e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503492094   38 SEKLIDNLNKEKFDDVIGIMDNSIKAQITVDKLKEVMESFK-KLRKFDSITKMIFQEK-NGIATVVSIAKYENGNIQFTL 115
Cdd:pfam13026   1 AEEFIELLNSGDFEEAYDMFSEDMKEALSEETLEAAWKQLVeQLGEFVSIEGYEVEETgQEYAVVIVVAKFEKGDVDFTI 80

                          90
                  ....*....|.
gi 503492094  116 SYNKNMQLCGL 126
Cdd:pfam13026  81 AFDEDMKIAGF 91
YifL COG5567
Small periplasmic lipoprotein YifL (function unknown) [Function unknown];
1-23 6.91e-04

Small periplasmic lipoprotein YifL (function unknown) [Function unknown];


Pssm-ID: 444309  Cd Length: 43  Bit Score: 35.27  E-value: 6.91e-04
                         10        20
                 ....*....|....*....|...
gi 503492094   1 MKRVFKFLIAMLCITVLGGCGAK 23
Cdd:COG5567    1 MKKLLRLLLLLLLLFTLAGCGLK 23
 
Name Accession Description Interval E-value
DUF3887 pfam13026
Protein of unknown function (DUF3887); This domain family is found in bacteria and archaea, ...
 38-126 3.10e-13

Protein of unknown function (DUF3887); This domain family is found in bacteria and archaea, and is approximately 90 amino acids in length.


Pssm-ID: 432940  Cd Length: 91  Bit Score: 60.75  E-value: 3.10e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503492094   38 SEKLIDNLNKEKFDDVIGIMDNSIKAQITVDKLKEVMESFK-KLRKFDSITKMIFQEK-NGIATVVSIAKYENGNIQFTL 115
Cdd:pfam13026   1 AEEFIELLNSGDFEEAYDMFSEDMKEALSEETLEAAWKQLVeQLGEFVSIEGYEVEETgQEYAVVIVVAKFEKGDVDFTI 80

                          90
                  ....*....|.
gi 503492094  116 SYNKNMQLCGL 126
Cdd:pfam13026  81 AFDEDMKIAGF 91
YifL COG5567
Small periplasmic lipoprotein YifL (function unknown) [Function unknown];
1-23 6.91e-04

Small periplasmic lipoprotein YifL (function unknown) [Function unknown];


Pssm-ID: 444309  Cd Length: 43  Bit Score: 35.27  E-value: 6.91e-04
                         10        20
                 ....*....|....*....|...
gi 503492094   1 MKRVFKFLIAMLCITVLGGCGAK 23
Cdd:COG5567    1 MKKLLRLLLLLLLLFTLAGCGLK 23
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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