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Conserved domains on  [gi|503616059|ref|WP_013850135|]
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DUF3280 domain-containing protein [Sinorhizobium meliloti]

Protein Classification

DUF3280 domain-containing protein( domain architecture ID 10569458)

DUF3280 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3280 pfam11684
Protein of unknown function (DUF2380); This family of proteins with unknown function appears ...
 34-165 1.81e-55

Protein of unknown function (DUF2380); This family of proteins with unknown function appears to be restricted to Proteobacteria.


:

Pssm-ID: 432000  Cd Length: 133  Bit Score: 171.31  E-value: 1.81e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503616059   34 KVAFLGMTFIDLSTEGAYNGvRADETARLELMEGAARDRFVQEG-FVILTNEPVAAELAATVNPADCNGCDLSMGERLGA 112
Cdd:pfam11684   2 KLAVFDFELIDTSAEPAPAG-RPEEAARLAAVTAQLREALAESGrYEVVDLAPVAAAIAAAANLRKCNGCAADIARKLGA 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 503616059  113 DYVLVGEVRKISNLILSVELVLRDVDSGEMLRGLAVDIRSNTDDSWLRGIRYI 165
Cdd:pfam11684  81 DLVVVGEVQKVSNLILNLNVYVRDVDTGKLVRGGSVDIRGNTDESWRRGVRYL 133
 
Name Accession Description Interval E-value
DUF3280 pfam11684
Protein of unknown function (DUF2380); This family of proteins with unknown function appears ...
 34-165 1.81e-55

Protein of unknown function (DUF2380); This family of proteins with unknown function appears to be restricted to Proteobacteria.


Pssm-ID: 432000  Cd Length: 133  Bit Score: 171.31  E-value: 1.81e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503616059   34 KVAFLGMTFIDLSTEGAYNGvRADETARLELMEGAARDRFVQEG-FVILTNEPVAAELAATVNPADCNGCDLSMGERLGA 112
Cdd:pfam11684   2 KLAVFDFELIDTSAEPAPAG-RPEEAARLAAVTAQLREALAESGrYEVVDLAPVAAAIAAAANLRKCNGCAADIARKLGA 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 503616059  113 DYVLVGEVRKISNLILSVELVLRDVDSGEMLRGLAVDIRSNTDDSWLRGIRYI 165
Cdd:pfam11684  81 DLVVVGEVQKVSNLILNLNVYVRDVDTGKLVRGGSVDIRGNTDESWRRGVRYL 133
TolBN COG5616
TolB amino-terminal domain (function unknown) [Signal transduction mechanisms];
106-143 7.72e-03

TolB amino-terminal domain (function unknown) [Signal transduction mechanisms];


Pssm-ID: 444347  Cd Length: 135  Bit Score: 34.86  E-value: 7.72e-03
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 503616059 106 MGERLGADYVLVGEVRKISN-LILSVELVlrDVDSGEML 143
Cdd:COG5616   69 IARELGVRYVLEGSVRRSGDrVRVTAQLI--DAATGRHL 105
 
Name Accession Description Interval E-value
DUF3280 pfam11684
Protein of unknown function (DUF2380); This family of proteins with unknown function appears ...
 34-165 1.81e-55

Protein of unknown function (DUF2380); This family of proteins with unknown function appears to be restricted to Proteobacteria.


Pssm-ID: 432000  Cd Length: 133  Bit Score: 171.31  E-value: 1.81e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503616059   34 KVAFLGMTFIDLSTEGAYNGvRADETARLELMEGAARDRFVQEG-FVILTNEPVAAELAATVNPADCNGCDLSMGERLGA 112
Cdd:pfam11684   2 KLAVFDFELIDTSAEPAPAG-RPEEAARLAAVTAQLREALAESGrYEVVDLAPVAAAIAAAANLRKCNGCAADIARKLGA 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 503616059  113 DYVLVGEVRKISNLILSVELVLRDVDSGEMLRGLAVDIRSNTDDSWLRGIRYI 165
Cdd:pfam11684  81 DLVVVGEVQKVSNLILNLNVYVRDVDTGKLVRGGSVDIRGNTDESWRRGVRYL 133
TolBN COG5616
TolB amino-terminal domain (function unknown) [Signal transduction mechanisms];
106-143 7.72e-03

TolB amino-terminal domain (function unknown) [Signal transduction mechanisms];


Pssm-ID: 444347  Cd Length: 135  Bit Score: 34.86  E-value: 7.72e-03
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 503616059 106 MGERLGADYVLVGEVRKISN-LILSVELVlrDVDSGEML 143
Cdd:COG5616   69 IARELGVRYVLEGSVRRSGDrVRVTAQLI--DAATGRHL 105
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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