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Conserved domains on  [gi|503616425|ref|WP_013850501|]
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FAD-binding oxidoreductase [Sinorhizobium meliloti]

Protein Classification

NAD(P)/FAD-dependent oxidoreductase( domain architecture ID 11429741)

FAD/NAD(P)-binding oxidoreductase that catalyzes the transfer of electrons from one molecule, the electron donor or reductant, to another molecule, the electron acceptor or oxidant

CATH:  3.30.9.10
EC:  1.-.-.-
Gene Ontology:  GO:0016491|GO:0050660
SCOP:  3000055

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DadA COG0665
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
1-366 4.45e-35

Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];


:

Pssm-ID: 440429 [Multi-domain]  Cd Length: 364  Bit Score: 131.95  E-value: 4.45e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503616425   1 MCEVLIVGGGVMGLWAAVMAARAGLTTRLLERRLIGSGASGGLLGALMPHMPDRWNDK-KQFQFDALvsleGEIAALETA 79
Cdd:COG0665    2 TADVVVIGGGIAGLSTAYHLARRGLDVTVLERGRPGSGASGRNAGQLRPGLAALADRAlVRLAREAL----DLWRELAAE 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503616425  80 TGLSAGYRRSGRVMPLGKPhlreialgREQDAAQNWHTPARRFHWHVRDADAGG----WPAADAAPF-GVVHDTLAARLA 154
Cdd:COG0665   78 LGIDCDFRRTGVLYLARTE--------AELAALRAEAEALRALGLPVELLDAAElrerEPGLGSPDYaGGLYDPDDGHVD 149
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503616425 155 PRSLLEMLRAALEQfPHVRLEEGAEVVSLDPARGRIS--LADGRDLTCDRLILAAGVESFSFIDGLTE--PLRApsggaV 230
Cdd:COG0665  150 PAKLVRALARAARA-AGVRIREGTPVTGLEREGGRVTgvRTERGTVRADAVVLAAGAWSARLLPMLGLrlPLRP-----V 223
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503616425 231 KGQAALLRA-DIDPALPIIFADGLYVVPHESGQVAVGSTSENRFEEPYSTDGQLDALLARATALAPALRGAPVVERWAGL 309
Cdd:COG0665  224 RGYVLVTEPlPDLPLRPVLDDTGVYLRPTADGRLLVGGTAEPAGFDRAPTPERLEALLRRLRRLFPALADAEIVRAWAGL 303
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 503616425 310 RPRSTGREPMVGRHPDHERVFVLTGGFKVSFGLAHALARSAVDEIAGRPASALPQTF 366
Cdd:COG0665  304 RPMTPDGLPIIGRLPGAPGLYVATGHGGHGVTLAPAAGRLLADLILGGEPPLDLAPF 360
 
Name Accession Description Interval E-value
DadA COG0665
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
1-366 4.45e-35

Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];


Pssm-ID: 440429 [Multi-domain]  Cd Length: 364  Bit Score: 131.95  E-value: 4.45e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503616425   1 MCEVLIVGGGVMGLWAAVMAARAGLTTRLLERRLIGSGASGGLLGALMPHMPDRWNDK-KQFQFDALvsleGEIAALETA 79
Cdd:COG0665    2 TADVVVIGGGIAGLSTAYHLARRGLDVTVLERGRPGSGASGRNAGQLRPGLAALADRAlVRLAREAL----DLWRELAAE 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503616425  80 TGLSAGYRRSGRVMPLGKPhlreialgREQDAAQNWHTPARRFHWHVRDADAGG----WPAADAAPF-GVVHDTLAARLA 154
Cdd:COG0665   78 LGIDCDFRRTGVLYLARTE--------AELAALRAEAEALRALGLPVELLDAAElrerEPGLGSPDYaGGLYDPDDGHVD 149
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503616425 155 PRSLLEMLRAALEQfPHVRLEEGAEVVSLDPARGRIS--LADGRDLTCDRLILAAGVESFSFIDGLTE--PLRApsggaV 230
Cdd:COG0665  150 PAKLVRALARAARA-AGVRIREGTPVTGLEREGGRVTgvRTERGTVRADAVVLAAGAWSARLLPMLGLrlPLRP-----V 223
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503616425 231 KGQAALLRA-DIDPALPIIFADGLYVVPHESGQVAVGSTSENRFEEPYSTDGQLDALLARATALAPALRGAPVVERWAGL 309
Cdd:COG0665  224 RGYVLVTEPlPDLPLRPVLDDTGVYLRPTADGRLLVGGTAEPAGFDRAPTPERLEALLRRLRRLFPALADAEIVRAWAGL 303
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 503616425 310 RPRSTGREPMVGRHPDHERVFVLTGGFKVSFGLAHALARSAVDEIAGRPASALPQTF 366
Cdd:COG0665  304 RPMTPDGLPIIGRLPGAPGLYVATGHGGHGVTLAPAAGRLLADLILGGEPPLDLAPF 360
DAO pfam01266
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ...
3-348 1.71e-21

FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.


Pssm-ID: 426168 [Multi-domain]  Cd Length: 339  Bit Score: 94.00  E-value: 1.71e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503616425    3 EVLIVGGGVMGLWAAVMAARAGLTTRLLERRLIGSGASGGLLGAL-MPHMPD-RWNDKKQFQFDALvsleGEIAALETAT 80
Cdd:pfam01266   1 DVVVIGGGIVGLSTAYELARRGLSVTLLERGDDPGSGASGRNAGLiHPGLRYlEPSELARLALEAL----DLWEELEEEL 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503616425   81 GLSAGYRRSGrVMPLGKPHLREiALGREQDAAQNWHTPARRFHwhvRDADAGGWPAADAApFGVVHDTLAARLAPRSLLE 160
Cdd:pfam01266  77 GIDCGFRRCG-VLVLARDEEEE-ALEKLLAALRRLGVPAELLD---AEELRELEPLLPGL-RGGLFYPDGGHVDPARLLR 150
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503616425  161 MLRAALEQFpHVRLEEGAEVVSLDPARGRISLADGRdlTCDRLILAAGVESFSFIDGLTEPLRAPsggaVKGQAALLRAD 240
Cdd:pfam01266 151 ALARAAEAL-GVRIIEGTEVTGIEEEGGVWGVVTTG--EADAVVNAAGAWADLLALPGLRLPVRP----VRGQVLVLEPL 223
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503616425  241 IDPAL------PIIFADGLYVVPHESGQVAVGSTSENRFEEPYSTDgQLDALLARATALAPALRGAPVVERWAGLRPRST 314
Cdd:pfam01266 224 PEALLilpvpiTVDPGRGVYLRPRADGRLLLGGTDEEDGFDDPTPD-PEEIEELLEAARRLFPALADIERAWAGLRPLPD 302
                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 503616425  315 GRePMVGRhPDHERVFVLTG----GFKVSFGLAHALAR 348
Cdd:pfam01266 303 GL-PIIGR-PGSPGLYLATGhgghGLTLAPGIGKLLAE 338
thiamin_ThiO TIGR02352
glycine oxidase ThiO; This family consists of the homotetrameric, FAD-dependent glycine ...
20-357 1.18e-15

glycine oxidase ThiO; This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein. [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]


Pssm-ID: 274092 [Multi-domain]  Cd Length: 337  Bit Score: 77.02  E-value: 1.18e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503616425   20 AARAGLTTRLLERRLIGSGASGGLLGALMPHMPdrWNDKKQFQFD-ALVSL---EGEIAALETATGLSAGYRRSGRVMpl 95
Cdd:TIGR02352   3 LAKRGHSVTLFDRDPMGGGASWAAAGMLAPHAE--CEYAEDPLFDlALESLrlyPEWLEALKELTGLDTGYHQCGTLV-- 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503616425   96 gkphlreIALGREqDAAQNWHT----PARRFHWHVRDADAGGW--PAADAAPFGVVHDTLAARLAPRSLLEMLRAALEQF 169
Cdd:TIGR02352  79 -------VAFDED-DVEHLRQLadlqSATGMEVEWLSGRALRRlePYLSGGIRGAVFYPDDAHVDPRALLKALEKALEKL 150
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503616425  170 pHVRLEEGAEVVSLDPARGRISL--ADGRDLTCDRLILAAGVESFSFidgLTEPLRApsggaVKGQAALLRADIDPALP- 246
Cdd:TIGR02352 151 -GVEIIEHTEVQHIEIRGEKVTAivTPSGDVQADQVVLAAGAWAGEL---LPLPLRP-----VRGQPLRLEAPAVPLLNr 221
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503616425  247 ----IIFADGLYVVPHESGQVAVGSTSENRFEEPYSTDGQLDALLARATALAPALRGAPVVERWAGLRPRSTGREPMVGR 322
Cdd:TIGR02352 222 plraVVYGRRVYIVPRRDGRLVVGATMEESGFDTTPTLGGIKELLRDAYTILPALKEARLLETWAGLRPGTPDNLPYIGE 301
                         330       340       350
                  ....*....|....*....|....*....|....*
gi 503616425  323 HPDHERVFVLTGGFKVSFGLAHALARSAVDEIAGR 357
Cdd:TIGR02352 302 HPEDRRLLIATGHYRNGILLAPATAEVIADLILGK 336
PRK05329 PRK05329
glycerol-3-phosphate dehydrogenase subunit GlpB;
1-30 1.26e-03

glycerol-3-phosphate dehydrogenase subunit GlpB;


Pssm-ID: 235412  Cd Length: 422  Bit Score: 40.60  E-value: 1.26e-03
                         10        20        30
                 ....*....|....*....|....*....|
gi 503616425   1 MCEVLIVGGGVMGLWAAVMAARAGLTTRLL 30
Cdd:PRK05329   2 KFDVLVIGGGLAGLTAALAAAEAGKRVALV 31
 
Name Accession Description Interval E-value
DadA COG0665
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
1-366 4.45e-35

Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];


Pssm-ID: 440429 [Multi-domain]  Cd Length: 364  Bit Score: 131.95  E-value: 4.45e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503616425   1 MCEVLIVGGGVMGLWAAVMAARAGLTTRLLERRLIGSGASGGLLGALMPHMPDRWNDK-KQFQFDALvsleGEIAALETA 79
Cdd:COG0665    2 TADVVVIGGGIAGLSTAYHLARRGLDVTVLERGRPGSGASGRNAGQLRPGLAALADRAlVRLAREAL----DLWRELAAE 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503616425  80 TGLSAGYRRSGRVMPLGKPhlreialgREQDAAQNWHTPARRFHWHVRDADAGG----WPAADAAPF-GVVHDTLAARLA 154
Cdd:COG0665   78 LGIDCDFRRTGVLYLARTE--------AELAALRAEAEALRALGLPVELLDAAElrerEPGLGSPDYaGGLYDPDDGHVD 149
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503616425 155 PRSLLEMLRAALEQfPHVRLEEGAEVVSLDPARGRIS--LADGRDLTCDRLILAAGVESFSFIDGLTE--PLRApsggaV 230
Cdd:COG0665  150 PAKLVRALARAARA-AGVRIREGTPVTGLEREGGRVTgvRTERGTVRADAVVLAAGAWSARLLPMLGLrlPLRP-----V 223
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503616425 231 KGQAALLRA-DIDPALPIIFADGLYVVPHESGQVAVGSTSENRFEEPYSTDGQLDALLARATALAPALRGAPVVERWAGL 309
Cdd:COG0665  224 RGYVLVTEPlPDLPLRPVLDDTGVYLRPTADGRLLVGGTAEPAGFDRAPTPERLEALLRRLRRLFPALADAEIVRAWAGL 303
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 503616425 310 RPRSTGREPMVGRHPDHERVFVLTGGFKVSFGLAHALARSAVDEIAGRPASALPQTF 366
Cdd:COG0665  304 RPMTPDGLPIIGRLPGAPGLYVATGHGGHGVTLAPAAGRLLADLILGGEPPLDLAPF 360
DAO pfam01266
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ...
3-348 1.71e-21

FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.


Pssm-ID: 426168 [Multi-domain]  Cd Length: 339  Bit Score: 94.00  E-value: 1.71e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503616425    3 EVLIVGGGVMGLWAAVMAARAGLTTRLLERRLIGSGASGGLLGAL-MPHMPD-RWNDKKQFQFDALvsleGEIAALETAT 80
Cdd:pfam01266   1 DVVVIGGGIVGLSTAYELARRGLSVTLLERGDDPGSGASGRNAGLiHPGLRYlEPSELARLALEAL----DLWEELEEEL 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503616425   81 GLSAGYRRSGrVMPLGKPHLREiALGREQDAAQNWHTPARRFHwhvRDADAGGWPAADAApFGVVHDTLAARLAPRSLLE 160
Cdd:pfam01266  77 GIDCGFRRCG-VLVLARDEEEE-ALEKLLAALRRLGVPAELLD---AEELRELEPLLPGL-RGGLFYPDGGHVDPARLLR 150
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503616425  161 MLRAALEQFpHVRLEEGAEVVSLDPARGRISLADGRdlTCDRLILAAGVESFSFIDGLTEPLRAPsggaVKGQAALLRAD 240
Cdd:pfam01266 151 ALARAAEAL-GVRIIEGTEVTGIEEEGGVWGVVTTG--EADAVVNAAGAWADLLALPGLRLPVRP----VRGQVLVLEPL 223
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503616425  241 IDPAL------PIIFADGLYVVPHESGQVAVGSTSENRFEEPYSTDgQLDALLARATALAPALRGAPVVERWAGLRPRST 314
Cdd:pfam01266 224 PEALLilpvpiTVDPGRGVYLRPRADGRLLLGGTDEEDGFDDPTPD-PEEIEELLEAARRLFPALADIERAWAGLRPLPD 302
                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 503616425  315 GRePMVGRhPDHERVFVLTG----GFKVSFGLAHALAR 348
Cdd:pfam01266 303 GL-PIIGR-PGSPGLYLATGhgghGLTLAPGIGKLLAE 338
thiamin_ThiO TIGR02352
glycine oxidase ThiO; This family consists of the homotetrameric, FAD-dependent glycine ...
20-357 1.18e-15

glycine oxidase ThiO; This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein. [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]


Pssm-ID: 274092 [Multi-domain]  Cd Length: 337  Bit Score: 77.02  E-value: 1.18e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503616425   20 AARAGLTTRLLERRLIGSGASGGLLGALMPHMPdrWNDKKQFQFD-ALVSL---EGEIAALETATGLSAGYRRSGRVMpl 95
Cdd:TIGR02352   3 LAKRGHSVTLFDRDPMGGGASWAAAGMLAPHAE--CEYAEDPLFDlALESLrlyPEWLEALKELTGLDTGYHQCGTLV-- 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503616425   96 gkphlreIALGREqDAAQNWHT----PARRFHWHVRDADAGGW--PAADAAPFGVVHDTLAARLAPRSLLEMLRAALEQF 169
Cdd:TIGR02352  79 -------VAFDED-DVEHLRQLadlqSATGMEVEWLSGRALRRlePYLSGGIRGAVFYPDDAHVDPRALLKALEKALEKL 150
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503616425  170 pHVRLEEGAEVVSLDPARGRISL--ADGRDLTCDRLILAAGVESFSFidgLTEPLRApsggaVKGQAALLRADIDPALP- 246
Cdd:TIGR02352 151 -GVEIIEHTEVQHIEIRGEKVTAivTPSGDVQADQVVLAAGAWAGEL---LPLPLRP-----VRGQPLRLEAPAVPLLNr 221
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503616425  247 ----IIFADGLYVVPHESGQVAVGSTSENRFEEPYSTDGQLDALLARATALAPALRGAPVVERWAGLRPRSTGREPMVGR 322
Cdd:TIGR02352 222 plraVVYGRRVYIVPRRDGRLVVGATMEESGFDTTPTLGGIKELLRDAYTILPALKEARLLETWAGLRPGTPDNLPYIGE 301
                         330       340       350
                  ....*....|....*....|....*....|....*
gi 503616425  323 HPDHERVFVLTGGFKVSFGLAHALARSAVDEIAGR 357
Cdd:TIGR02352 302 HPEDRRLLIATGHYRNGILLAPATAEVIADLILGK 336
Ndh COG1252
NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];
146-220 3.73e-05

NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];


Pssm-ID: 440864 [Multi-domain]  Cd Length: 386  Bit Score: 45.12  E-value: 3.73e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 503616425 146 HDTLAARLAPRSLLEMLRAALeQFPHVRLEEGaEVVSLDPARGRISLADGRDLTCDRLILAAGVESFSF-IDGLTE 220
Cdd:COG1252   46 PEVAAGTLSPDDIAIPLRELL-RRAGVRFIQG-EVTGIDPEARTVTLADGRTLSYDYLVIATGSVTNFFgIPGLAE 119
FadH2 COG0446
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase ...
155-221 1.12e-04

NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase [Lipid transport and metabolism];


Pssm-ID: 440215 [Multi-domain]  Cd Length: 322  Bit Score: 43.65  E-value: 1.12e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 503616425 155 PRSLLEMLRAALEQFpHVRLEEGAEVVSLDPARGRISLADGRDLTCDRLILAAGVESFSF-IDGLTEP 221
Cdd:COG0446   35 PEDLLVRTPESFERK-GIDVRTGTEVTAIDPEAKTVTLRDGETLSYDKLVLATGARPRPPpIPGLDLP 101
FAD_oxidored pfam12831
FAD dependent oxidoreductase; This family of proteins contains FAD dependent oxidoreductases ...
4-33 1.57e-04

FAD dependent oxidoreductase; This family of proteins contains FAD dependent oxidoreductases and related proteins.


Pssm-ID: 432816 [Multi-domain]  Cd Length: 420  Bit Score: 43.37  E-value: 1.57e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 503616425    4 VLIVGGGVMGLWAAVMAARAGLTTRLLERR 33
Cdd:pfam12831   2 VVVVGGGPAGVAAAIAAARAGAKVLLVERR 31
PRK05329 PRK05329
glycerol-3-phosphate dehydrogenase subunit GlpB;
1-30 1.26e-03

glycerol-3-phosphate dehydrogenase subunit GlpB;


Pssm-ID: 235412  Cd Length: 422  Bit Score: 40.60  E-value: 1.26e-03
                         10        20        30
                 ....*....|....*....|....*....|
gi 503616425   1 MCEVLIVGGGVMGLWAAVMAARAGLTTRLL 30
Cdd:PRK05329   2 KFDVLVIGGGLAGLTAALAAAEAGKRVALV 31
NirB COG1251
NAD(P)H-nitrite reductase, large subunit [Energy production and conversion];
171-212 1.29e-03

NAD(P)H-nitrite reductase, large subunit [Energy production and conversion];


Pssm-ID: 440863 [Multi-domain]  Cd Length: 402  Bit Score: 40.51  E-value: 1.29e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 503616425 171 HVRLEEGAEVVSLDPARGRISLADGRDLTCDRLILAAGVESF 212
Cdd:COG1251   70 GIDLRLGTRVTAIDRAARTVTLADGETLPYDKLVLATGSRPR 111
PRK08274 PRK08274
FAD-dependent tricarballylate dehydrogenase TcuA;
1-32 1.53e-03

FAD-dependent tricarballylate dehydrogenase TcuA;


Pssm-ID: 236214 [Multi-domain]  Cd Length: 466  Bit Score: 40.24  E-value: 1.53e-03
                         10        20        30
                 ....*....|....*....|....*....|..
gi 503616425   1 MCEVLIVGGGVMGLWAAVMAARAGLTTRLLER 32
Cdd:PRK08274   4 MVDVLVIGGGNAALCAALAAREAGASVLLLEA 35
NirB COG1251
NAD(P)H-nitrite reductase, large subunit [Energy production and conversion];
144-209 1.75e-03

NAD(P)H-nitrite reductase, large subunit [Energy production and conversion];


Pssm-ID: 440863 [Multi-domain]  Cd Length: 402  Bit Score: 40.12  E-value: 1.75e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503616425 144 VVH--DTLAARLAPRSLLEMLRAALEQFpHVRLEEGAEVVSL--DPARGRISLADGRDLTCDRLILAAGV 209
Cdd:COG1251  170 VVEraPRLLPRQLDEEAGALLQRLLEAL-GVEVRLGTGVTEIegDDRVTGVRLADGEELPADLVVVAIGV 238
TrxB COG0492
Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];
2-32 2.76e-03

Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440258 [Multi-domain]  Cd Length: 305  Bit Score: 39.33  E-value: 2.76e-03
                         10        20        30
                 ....*....|....*....|....*....|.
gi 503616425   2 CEVLIVGGGVMGLWAAVMAARAGLTTRLLER 32
Cdd:COG0492    1 YDVVIIGAGPAGLTAAIYAARAGLKTLVIEG 31
mhpA PRK06183
bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase;
1-212 5.02e-03

bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase;


Pssm-ID: 235727 [Multi-domain]  Cd Length: 500  Bit Score: 38.73  E-value: 5.02e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503616425   1 MCEVLIVGGGVMGLWAAVMAARAGLTTRLLERRligsgasggllgALMPHMPdRwndkkqfqfdaLVSLEGEIAALETAT 80
Cdd:PRK06183  10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERW------------PTLYDLP-R-----------AVGIDDEALRVLQAI 65
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503616425  81 GLSagyrrsGRVMPLGKPH--LReialgreqdaaqnWHTPARR--FHWHVRDADAGGWPAADAApfgvvHDTLAARLapr 156
Cdd:PRK06183  66 GLA------DEVLPHTTPNhgMR-------------FLDAKGRclAEIARPSTGEFGWPRRNAF-----HQPLLEAV--- 118
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 503616425 157 sllemLRAALEQFPHVRLEEGAEVVSL----DPARGRISLADG--RDLTCDRLILAAGVESF 212
Cdd:PRK06183 119 -----LRAGLARFPHVRVRFGHEVTALtqddDGVTVTLTDADGqrETVRARYVVGCDGANSF 175
SdhA COG1053
Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and ...
1-32 7.34e-03

Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit is part of the Pathway/BioSystem: TCA cycle


Pssm-ID: 440673 [Multi-domain]  Cd Length: 443  Bit Score: 38.28  E-value: 7.34e-03
                         10        20        30
                 ....*....|....*....|....*....|..
gi 503616425   1 MCEVLIVGGGVMGLWAAVMAARAGLTTRLLER 32
Cdd:COG1053    3 EYDVVVVGSGGAGLRAALEAAEAGLKVLVLEK 34
UbiH COG0654
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme ...
1-211 8.11e-03

2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme transport and metabolism, Energy production and conversion]; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases is part of the Pathway/BioSystem: Ubiquinone biosynthesis


Pssm-ID: 440419 [Multi-domain]  Cd Length: 326  Bit Score: 38.00  E-value: 8.11e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503616425   1 MCEVLIVGGGVMGLWAAVMAARAGLTTRLLERRligsgasggllgalmphmpdrwndkkqfqfdalvslegeiaaletat 80
Cdd:COG0654    3 RTDVLIVGGGPAGLALALALARAGIRVTVVERA----------------------------------------------- 35
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503616425  81 glsAGYRRSGR---VMPLGKPHLREIALGREQDAAqnwHTPARrfHWHVRDADAGGWPA-ADAAPFGVVHDTLAARlapR 156
Cdd:COG0654   36 ---PPPRPDGRgiaLSPRSLELLRRLGLWDRLLAR---GAPIR--GIRVRDGSDGRVLArFDAAETGLPAGLVVPR---A 104
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 503616425 157 SLLEMLRAALEQFpHVRLEEGAEVVSL--DPARGRISLADGRDLTCDRLILAAGVES 211
Cdd:COG0654  105 DLERALLEAARAL-GVELRFGTEVTGLeqDADGVTVTLADGRTLRADLVVGADGARS 160
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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