|
Name |
Accession |
Description |
Interval |
E-value |
| BRR2 |
COG1204 |
Replicative superfamily II helicase [Replication, recombination and repair]; |
135-542 |
1.10e-94 |
|
Replicative superfamily II helicase [Replication, recombination and repair];
Pssm-ID: 440817 [Multi-domain] Cd Length: 529 Bit Score: 306.82 E-value: 1.10e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 135 QLTDFQLQLF-RSLESEQNLSISAPTSAGKSFVLNLSLSNQIKEKSCnsIVYVVPTRALISEVSTRVRSAIKRIGQdKAI 213
Cdd:COG1204 22 ELYPPQAEALeAGLLEGKNLVVSAPTASGKTLIAELAILKALLNGGK--ALYIVPLRALASEKYREFKRDFEELGI-KVG 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 214 IRTTPFPVDRTKVRTNVVYIFTQERLLSFLSA-TDVEPQIDTLIVDEAHEIQNGKRGIILQTAIDIALRKFCNAKLLFAS 292
Cdd:COG1204 99 VSTGDYDSDDEWLGRYDILVATPEKLDSLLRNgPSWLRDVDLVVVDEAHLIDDESRGPTLEVLLARLRRLNPEAQIVALS 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 293 PLIQNPEYFLSLFqrtsNGKFFTEVISPVSQNILLVNQvarkptkmhisllNSIGTTEIGEFvlpfqlrnsKHQQIANLA 372
Cdd:COG1204 179 ATIGNAEEIAEWL----DAELVKSDWRPVPLNEGVLYD-------------GVLRFDDGSRR---------SKDPTLALA 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 373 L-SLSDDDSVIAFSNTPSSAEERAVQAAQLAQNIDVSEDIEMF------ISFIKQEIHPNYALINCLKKGIAFHYGNMPS 445
Cdd:COG1204 233 LdLLEEGGQVLVFVSSRRDAESLAKKLADELKRRLTPEEREELeelaeeLLEVSEETHTNEKLADCLEKGVAFHHAGLPS 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 446 LLRTGVEDLFRNGDVKVVFCTSTLLQGVNLPAKHIIIENPKSGDNG-MTRADFLNLAGRAGRLLNEFHGNVWCIRP---- 520
Cdd:COG1204 313 ELRRLVEDAFREGLIKVLVATPTLAAGVNLPARRVIIRDTKRGGMVpIPVLEFKQMAGRAGRPGYDPYGEAILVAKssde 392
|
410 420
....*....|....*....|...
gi 503622760 521 -EEWESPCYTGDkLQTITSSISN 542
Cdd:COG1204 393 aDELFERYILGE-PEPIRSKLAN 414
|
|
| DEXHc_Ski2 |
cd17921 |
DEXH-box helicase domain of DEAD-like helicase Ski2 family proteins; Ski2-like RNA helicases ... |
136-313 |
1.19e-30 |
|
DEXH-box helicase domain of DEAD-like helicase Ski2 family proteins; Ski2-like RNA helicases play an important role in RNA degradation, processing, and splicing pathways. They belong to the type II DEAD box helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350679 [Multi-domain] Cd Length: 181 Bit Score: 118.90 E-value: 1.19e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 136 LTDFQLQLFRSLESEQ-NLSISAPTSAGKSFVLNLSLSNQIKeKSCNSIVYVVPTRALISEVSTRVRSAIKRIGQDKAII 214
Cdd:cd17921 2 LNPIQREALRALYLSGdSVLVSAPTSSGKTLIAELAILRALA-TSGGKAVYIAPTRALVNQKEADLRERFGPLGKNVGLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 215 rTTPFPVDRTKVRTNVVYIFTQERLLSFL--SATDVEPQIDTLIVDEAHEIQNGKRGIILQTAIDIALRKFCNAKLLFAS 292
Cdd:cd17921 81 -TGDPSVNKLLLAEADILVATPEKLDLLLrnGGERLIQDVRLVVVDEAHLIGDGERGVVLELLLSRLLRINKNARFVGLS 159
|
170 180
....*....|....*....|.
gi 503622760 293 PLIQNPEYFLSLFQRTSNGKF 313
Cdd:cd17921 160 ATLPNAEDLAEWLGVEDLIRF 180
|
|
| SF2_C_Ski2 |
cd18795 |
C-terminal helicase domain of the Ski2 family helicases; Ski2-like RNA helicases play an ... |
435-506 |
5.11e-21 |
|
C-terminal helicase domain of the Ski2 family helicases; Ski2-like RNA helicases play an important role in RNA degradation, processing, and splicing pathways. This family includes spliceosomal Brr2 RNA helicase, ASCC3 (involved in the repair of N-alkylated nucleotides), Mtr4 (involved in processing of structured RNAs), DDX60 (involved in viral RNA degradation), and other proteins. Ski2-like RNA helicases are DEAD-like helicases belonging to superfamily (SF)2, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF1 helicases, SF2 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Pssm-ID: 350182 [Multi-domain] Cd Length: 154 Bit Score: 90.30 E-value: 5.11e-21
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 503622760 435 GIAFHYGNMPSLLRTGVEDLFRNGDVKVVFCTSTLLQGVNLPAKHIIIENPKSGDNG----MTRADFLNLAGRAGR 506
Cdd:cd18795 65 GIAFHHAGLTREDRELVEELFREGLIKVLVATSTLAAGVNLPARTVIIKGTQRYDGKgyreLSPLEYLQMIGRAGR 140
|
|
| PRK02362 |
PRK02362 |
ATP-dependent DNA helicase; |
152-506 |
2.09e-20 |
|
ATP-dependent DNA helicase;
Pssm-ID: 235032 [Multi-domain] Cd Length: 737 Bit Score: 96.57 E-value: 2.09e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 152 NLSISAPTSAGKSFVLNLSLSNQIKE-KSCnsiVYVVPTRALISEVSTRVRSAIK---RIGqdkaiIRTTPFpvDRTKVR 227
Cdd:PRK02362 41 NLLAAIPTASGKTLIAELAMLKAIARgGKA---LYIVPLRALASEKFEEFERFEElgvRVG-----ISTGDY--DSRDEW 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 228 --TNVVYIFTQERLLSFL-SATDVEPQIDTLIVDEAHEIQNGKRGIILQTAIdialrkfcnAKLLFASPLIQnpeyFLSL 304
Cdd:PRK02362 111 lgDNDIIVATSEKVDSLLrNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTL---------AKLRRLNPDLQ----VVAL 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 305 FQRTSNGKFFTEVISPVsqnilLVNQVARkPTKMHISLL--NSI----GTTEIGefvlpfqlRNSKHQQIANLALSLSDD 378
Cdd:PRK02362 178 SATIGNADELADWLDAE-----LVDSEWR-PIDLREGVFygGAIhfddSQREVE--------VPSKDDTLNLVLDTLEEG 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 379 DSVIAFSNTPSSAEERAVQAAQLAQNIDVSEDIEMFISfIKQEIHPNY------ALINCLKKGIAFHYGNMPSLLRTGVE 452
Cdd:PRK02362 244 GQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAE-LAEEIREVSdtetskDLADCVAKGAAFHHAGLSREHRELVE 322
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 503622760 453 DLFRNGDVKVVFCTSTLLQGVNLPAKHIIIENPK--SGDNGMTRADFL---NLAGRAGR 506
Cdd:PRK02362 323 DAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRryDGGAGMQPIPVLeyhQMAGRAGR 381
|
|
| PRK01172 |
PRK01172 |
ATP-dependent DNA helicase; |
130-506 |
4.35e-19 |
|
ATP-dependent DNA helicase;
Pssm-ID: 100801 [Multi-domain] Cd Length: 674 Bit Score: 92.25 E-value: 4.35e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 130 TDNEIQLTDFQLQLFRSLESEQNLSISAPTSAGKSFVLNLSL--SNQIKEKScnsiVYVVPTRAL----ISEVStRVRSA 203
Cdd:PRK01172 17 TGNDFELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIyeTFLAGLKS----IYIVPLRSLamekYEELS-RLRSL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 204 IKRIGQDKAIIRTTPfpvdrTKVRTNVVYIFTQERLLSFLSAT-DVEPQIDTLIVDEAHEIQNGKRGIILQTAIDIALRK 282
Cdd:PRK01172 92 GMRVKISIGDYDDPP-----DFIKRYDVVILTSEKADSLIHHDpYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYV 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 283 FCNAKLLFASPLIQNPEYFLSLFQRTSNGKFFTEVisPVSQNILLVNQVarkptkmhisLLNSIGTTEIGEfvlpfqlrN 362
Cdd:PRK01172 167 NPDARILALSATVSNANELAQWLNASLIKSNFRPV--PLKLGILYRKRL----------ILDGYERSQVDI--------N 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 363 SKHQQIANlalslsDDDSVIAFSNTPSSAEERAVQAAQLaqnidVSEDIEMFISFIKQEIHPNyALINCLKKGIAFHYGN 442
Cdd:PRK01172 227 SLIKETVN------DGGQVLVFVSSRKNAEDYAEMLIQH-----FPEFNDFKVSSENNNVYDD-SLNEMLPHGVAFHHAG 294
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 503622760 443 MPSLLRTGVEDLFRNGDVKVVFCTSTLLQGVNLPAKHIIIEN-PKSGDNG---MTRADFLNLAGRAGR 506
Cdd:PRK01172 295 LSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVRDiTRYGNGGiryLSNMEIKQMIGRAGR 362
|
|
| PRK00254 |
PRK00254 |
ski2-like helicase; Provisional |
151-506 |
2.02e-15 |
|
ski2-like helicase; Provisional
Pssm-ID: 234702 [Multi-domain] Cd Length: 720 Bit Score: 80.63 E-value: 2.02e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 151 QNLSISAPTSAGKSFVLNLSLSNQIKEKSCNSiVYVVPTRALiSEVSTRVRSAIKRIGQDKAIIRTTPFPVDRTKVRTNV 230
Cdd:PRK00254 40 KNLVLAIPTASGKTLVAEIVMVNKLLREGGKA-VYLVPLKAL-AEEKYREFKDWEKLGLRVAMTTGDYDSTDEWLGKYDI 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 231 VyIFTQERLLSFLS-ATDVEPQIDTLIVDEAHEIQNGKRGIILQTAIDIALRKfcnAKLLFASPLIQNPEYFLSLFqrts 309
Cdd:PRK00254 118 I-IATAEKFDSLLRhGSSWIKDVKLVVADEIHLIGSYDRGATLEMILTHMLGR---AQILGLSATVGNAEELAEWL---- 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 310 NGKFFTEVISPVSqnillvnqvARKPTKMHISLLNSIGTTEigefvlpfQLRNSKHQQIANlalSLSDDDSVIAFSNTPS 389
Cdd:PRK00254 190 NAELVVSDWRPVK---------LRKGVFYQGFLFWEDGKIE--------RFPNSWESLVYD---AVKKGKGALVFVNTRR 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 390 SAEERAVQAAQLAQNIDVSEDIEMFISFIKQ-EIHP-NYALINCLKKGIAFHYGNMPSLLRTGVEDLFRNGDVKVVFCTS 467
Cdd:PRK00254 250 SAEKEALELAKKIKRFLTKPELRALKELADSlEENPtNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATP 329
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 503622760 468 TLLQGVNLPAKHIIIENPKSGDN-GMTRADFL---NLAGRAGR 506
Cdd:PRK00254 330 TLSAGINLPAFRVIIRDTKRYSNfGWEDIPVLeiqQMMGRAGR 372
|
|
| Dob10 |
COG4581 |
Superfamily II RNA helicase [Replication, recombination and repair]; |
134-506 |
5.68e-15 |
|
Superfamily II RNA helicase [Replication, recombination and repair];
Pssm-ID: 443638 [Multi-domain] Cd Length: 751 Bit Score: 79.21 E-value: 5.68e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 134 IQLTDFQLQLFRSLESEQNLSISAPTSAGKS----FVLNLSLSNQIKekscnsIVYVVPTRALISEvstRVRSAIKRIGQ 209
Cdd:COG4581 24 FELDPFQEEAILALEAGRSVLVAAPTGSGKTlvaeFAIFLALARGRR------SFYTAPIKALSNQ---KFFDLVERFGA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 210 DK--------AIIRTTPfpvdrtkvrtnVVyIFTQERLLSFLSATDVEPQ-IDTLIVDEAHEIQNGKRGIILQTAIdIAL 280
Cdd:COG4581 95 ENvglltgdaSVNPDAP-----------IV-VMTTEILRNMLYREGADLEdVGVVVMDEFHYLADPDRGWVWEEPI-IHL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 281 rkfcnakllfaspliqnPEY--FLSLFQRTSNGKFFTEVISPVSQNILLVNQVARK-PTKMHISLlnsigtteiGEFVLP 357
Cdd:COG4581 162 -----------------PARvqLVLLSATVGNAEEFAEWLTRVRGETAVVVSEERPvPLEFHYLV---------TPRLFP 215
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 358 FQLRNSKHQQIANLALSLSDDDS-------VIAFSntpssaeeRA--VQAAQLAQNIDVSEDIEmfisfiKQEIH----- 423
Cdd:COG4581 216 LFRVNPELLRPPSRHEVIEELDRggllpaiVFIFS--------RRgcDEAAQQLLSARLTTKEE------RAEIReaide 281
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 424 -------PNY-ALINCLKKGIAFHYGNMPSLLRTGVEDLFRNGDVKVVFCTSTLLQGVNLPAKHIIIENPKSGDNGMTR- 494
Cdd:COG4581 282 faedfsvLFGkTLSRLLRRGIAVHHAGMLPKYRRLVEELFQAGLLKVVFATDTLAVGINMPARTVVFTKLSKFDGERHRp 361
|
410
....*....|....*
gi 503622760 495 ---ADFLNLAGRAGR 506
Cdd:COG4581 362 ltaREFHQIAGRAGR 376
|
|
| DEXDc |
smart00487 |
DEAD-like helicases superfamily; |
134-325 |
7.05e-15 |
|
DEAD-like helicases superfamily;
Pssm-ID: 214692 [Multi-domain] Cd Length: 201 Bit Score: 74.07 E-value: 7.05e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 134 IQLTDFQLQLFRS-LESEQNLSISAPTSAGKSFVLNLSLSNQIKEKSCNSIVYVVPTRALISEVSTRVRSAIKRI-GQDK 211
Cdd:smart00487 7 EPLRPYQKEAIEAlLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGGRVLVLVPTRELAEQWAEELKKLGPSLgLKVV 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 212 AIIRTTPFPVDRTKVRTNV--VYIFTQERLLSFLSATDVE-PQIDTLIVDEAHEIQNGKRGIILqtaIDIALRKFCNAKL 288
Cdd:smart00487 87 GLYGGDSKREQLRKLESGKtdILVTTPGRLLDLLENDKLSlSNVDLVILDEAHRLLDGGFGDQL---EKLLKLLPKNVQL 163
|
170 180 190
....*....|....*....|....*....|....*...
gi 503622760 289 LFAS-PLIQNPEYFLSLFQrtsNGKFFTEVISPVSQNI 325
Cdd:smart00487 164 LLLSaTPPEEIENLLELFL---NDPVFIDVGFTPLEPI 198
|
|
| DEAD |
pfam00270 |
DEAD/DEAH box helicase; Members of this family include the DEAD and DEAH box helicases. ... |
137-276 |
2.56e-13 |
|
DEAD/DEAH box helicase; Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Pssm-ID: 425570 [Multi-domain] Cd Length: 165 Bit Score: 68.42 E-value: 2.56e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 137 TDFQLQLFRSLESEQNLSISAPTSAGKSFVLNLSLSNQIKEKSCNS-IVYVVPTRALISEVSTRVRSAIKRIG-QDKAII 214
Cdd:pfam00270 1 TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLDNGPqALVLAPTRELAEQIYEELKKLGKGLGlKVASLL 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 503622760 215 RTTPFPVDRTKVRTNVVYIFTQERLLSFLSATDVEPQIDTLIVDEAHEIQNGKRGIILQTAI 276
Cdd:pfam00270 81 GGDSRKEQLEKLKGPDILVGTPGRLLDLLQERKLLKNLKLLVLDEAHRLLDMGFGPDLEEIL 142
|
|
| YprA |
COG1205 |
ATP-dependent helicase YprA, contains C-terminal metal-binding DUF1998 domain [Replication, ... |
135-506 |
1.25e-11 |
|
ATP-dependent helicase YprA, contains C-terminal metal-binding DUF1998 domain [Replication, recombination and repair];
Pssm-ID: 440818 [Multi-domain] Cd Length: 758 Bit Score: 68.32 E-value: 1.25e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 135 QLTDFQLQLFRSLESEQNLSISAPTSAGKSFVLNLSLSNQIKEKSCNSIVYVVPTRALISEVSTRVRSAIKRIGQDkaiI 214
Cdd:COG1205 56 RLYSHQAEAIEAARAGKNVVIATPTASGKSLAYLLPVLEALLEDPGATALYLYPTKALARDQLRRLRELAEALGLG---V 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 215 RTTPF-----PVDRTKVRTNVVYIFT------------QERLLSFLSAtdvepqIDTLIVDEAHEIqngkRGI------- 270
Cdd:COG1205 133 RVATYdgdtpPEERRWIREHPDIVLTnpdmlhygllphHTRWARFFRN------LRYVVIDEAHTY----RGVfgshvan 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 271 ILQTaidiaLRKFC-----NAKLLFASPLIQNPEYFLS-LFqrtsnGKFFTEvispVSQNillvnqVARKPtKMHISLLN 344
Cdd:COG1205 203 VLRR-----LRRICrhygsDPQFILASATIGNPAEHAErLT-----GRPVTV----VDED------GSPRG-ERTFVLWN 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 345 SigtteigeFVLPFQLRNSKHQQIANLALSLSDDD-SVIAFSNTPSSAEERAVQAAQLAQNIDvsediemfisfikqeih 423
Cdd:COG1205 262 P--------PLVDDGIRRSALAEAARLLADLVREGlRTLVFTRSRRGAELLARYARRALREPD----------------- 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 424 pnyalincLKKGIAFHYGNMPSLLRTGVEDLFRNGDVKVVFCTSTL--------LQGVnlpakhIIIENPKsgdngmTRA 495
Cdd:COG1205 317 --------LADRVAAYRAGYLPEERREIERGLRSGELLGVVSTNALelgidiggLDAV------VLAGYPG------TRA 376
|
410
....*....|.
gi 503622760 496 DFLNLAGRAGR 506
Cdd:COG1205 377 SFWQQAGRAGR 387
|
|
| DEXHc_archSki2 |
cd18028 |
DEXH-box helicase domain of archaeal Ski2-type helicase; Archaeal Ski2-type RNA helicases play ... |
147-299 |
2.28e-10 |
|
DEXH-box helicase domain of archaeal Ski2-type helicase; Archaeal Ski2-type RNA helicases play an important role in RNA degradation, processing and splicing pathways. They belong to the type II DEAD box helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350786 [Multi-domain] Cd Length: 177 Bit Score: 60.43 E-value: 2.28e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 147 LESEQNLSISAPTSAGKSFVLNLSLSNQIKEKscNSIVYVVPTRALISEVSTRVRSaIKRIGQdKAIIRTTPFPVDRTKV 226
Cdd:cd18028 14 LLKGENLLISIPTASGKTLIAEMAMVNTLLEG--GKALYLVPLRALASEKYEEFKK-LEEIGL-KVGISTGDYDEDDEWL 89
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 503622760 227 RTNVVYIFTQERLLSFL-SATDVEPQIDTLIVDEAHEIQNGKRGIILQTAIDIALRKFCNAKLLFASPLIQNPE 299
Cdd:cd18028 90 GDYDIIVATYEKFDSLLrHSPSWLRDVGVVVVDEIHLISDEERGPTLESIVARLRRLNPNTQIIGLSATIGNPD 163
|
|
| HELICc |
smart00490 |
helicase superfamily c-terminal domain; |
426-506 |
3.57e-10 |
|
helicase superfamily c-terminal domain;
Pssm-ID: 197757 [Multi-domain] Cd Length: 82 Bit Score: 56.84 E-value: 3.57e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 426 YALINCLKKGIAFHYGNMPSLLRTGVEDLFRNGDVKVVFCTSTLLQGVNLP-AKHIIIEnpksgDNGMTRADFLNLAGRA 504
Cdd:smart00490 4 AELLKELGIKVARLHGGLSQEEREEILDKFNNGKIKVLVATDVAERGLDLPgVDLVIIY-----DLPWSPASYIQRIGRA 78
|
..
gi 503622760 505 GR 506
Cdd:smart00490 79 GR 80
|
|
| DEXHc_POLQ-like |
cd18026 |
DEXH-box helicase domain of DNA polymerase theta; DNA polymerase theta (POLQ) is important in ... |
146-293 |
8.67e-10 |
|
DEXH-box helicase domain of DNA polymerase theta; DNA polymerase theta (POLQ) is important in the repair of genomic double-strand breaks (DSBs). POLQ contains an N-terminal type II DEAD box helicase domain which contains the ATP-binding region.
Pssm-ID: 350784 [Multi-domain] Cd Length: 202 Bit Score: 59.15 E-value: 8.67e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 146 SLESEQNLSISAPTSAGKSFVLNLSLSNQIKEKSCNSIvYVVPTRALISEvstRVRsAIKRIGQDKAII-------RTTP 218
Cdd:cd18026 29 GLLEGRNLVYSLPTSGGKTLVAEILMLKRLLERRKKAL-FVLPYVSIVQE---KVD-ALSPLFEELGFRvegyagnKGRS 103
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 503622760 219 FPVDRTKvrtNVVYIFTQER---LLSFLSATDVEPQIDTLIVDEAHEIQNGKRGIILQTAIdialrkfcnAKLLFASP 293
Cdd:cd18026 104 PPKRRKS---LSVAVCTIEKansLVNSLIEEGRLDELGLVVVDELHMLGDGHRGALLELLL---------TKLLYAAQ 169
|
|
| DEXHc_LHR-like |
cd17922 |
DEXH-box helicase domain of LHR; Large helicase-related protein (LHR) is a DNA ... |
151-276 |
3.13e-08 |
|
DEXH-box helicase domain of LHR; Large helicase-related protein (LHR) is a DNA damage-inducible helicase that uses ATP hydrolysis to drive unidirectional 3'-to-5' translocation along single-stranded DNA (ssDNA) and to unwind RNA:DNA duplexes. This group also includes related bacterial and archaeal helicases from the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350680 [Multi-domain] Cd Length: 166 Bit Score: 53.74 E-value: 3.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 151 QNLSISAPTSAGKSFVLNLSLSNQIKEKSCNSI--VYVVPTRALISEVSTRVRSAIKRIGQD-KAIIRT--TPfPVDRTK 225
Cdd:cd17922 2 RNVLIAAPTGSGKTEAAFLPALSSLADEPEKGVqvLYISPLKALINDQERRLEEPLDEIDLEiPVAVRHgdTS-QSEKAK 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 503622760 226 VRTNV--VYIFTQERLLSFLSATDVEPQ---IDTLIVDEAHEIQNGKRGIILQTAI 276
Cdd:cd17922 81 QLKNPpgILITTPESLELLLVNKKLRELfagLRYVVVDEIHALLGSKRGVQLELLL 136
|
|
| Helicase_C |
pfam00271 |
Helicase conserved C-terminal domain; The Prosite family is restricted to DEAD/H helicases, ... |
428-506 |
9.10e-08 |
|
Helicase conserved C-terminal domain; The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase.
Pssm-ID: 459740 [Multi-domain] Cd Length: 109 Bit Score: 51.06 E-value: 9.10e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 428 LINCLKKGIAFHYGNMPSLLRTGVEDLFRNGDVKVVFCTSTLLQGVNLP-AKHIIIENPKSGdngmtRADFLNLAGRAGR 506
Cdd:pfam00271 33 LLEKEGIKVARLHGDLSQEEREEILEDFRKGKIDVLVATDVAERGLDLPdVDLVINYDLPWN-----PASYIQRIGRAGR 107
|
|
| DEXHc_DDX60 |
cd18025 |
DEXH-box helicase domain of DEAD box protein 60; DEAD box protein 60 (DDX60) is an ... |
138-307 |
2.55e-07 |
|
DEXH-box helicase domain of DEAD box protein 60; DEAD box protein 60 (DDX60) is an IFN-inducible cytoplasmic helicase that plays a role in RIG-I-mediated type I interferon (IFN) nuclease-mediated viral RNA degradation. DDX60 belongs to the type II DEAD box helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350783 [Multi-domain] Cd Length: 192 Bit Score: 51.60 E-value: 2.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 138 DFQLQLFRSLESEQNLSISAPTSAGKSFVLNLSLSNQIKEKSCNSIVYVVPTRALI----SEVSTRVRSAIKRIGQDKAI 213
Cdd:cd18025 4 AWQRELLDIVDRRESALIVAPTSSGKTFISYYCMEKVLRESDDGVVVYVAPTKALVnqvvAEVYARFSKKYPPSGKSLWG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 214 IRTTPF---PVDRTKVRTNVVYIFtQERLLSFLSATDVePQIDTLIVDEAHEIQNGKRGII---LQTAID---IALrkfc 284
Cdd:cd18025 84 VFTRDYrhnNPMNCQVLITVPECL-EILLLSPHNASWV-PRIKYVIFDEIHSIGQSEDGAVweqLLLLIPcpfLAL---- 157
|
170 180
....*....|....*....|...
gi 503622760 285 nakllfaSPLIQNPEYFLSLFQR 307
Cdd:cd18025 158 -------SATIGNPQKFHEWLQS 173
|
|
| SF2-N |
cd00046 |
N-terminal DEAD/H-box helicase domain of superfamily 2 helicases; The DEAD/H-like superfamily ... |
155-292 |
3.27e-07 |
|
N-terminal DEAD/H-box helicase domain of superfamily 2 helicases; The DEAD/H-like superfamily 2 helicases comprise a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This N-terminal domain contains the ATP-binding region.
Pssm-ID: 350668 [Multi-domain] Cd Length: 146 Bit Score: 50.48 E-value: 3.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 155 ISAPTSAGKSFVLNLSLSNQIKEKSCNsIVYVVPTRALISEVSTRVRSaIKRIGQDKAII--RTTPFPVDRTKVRTNVVY 232
Cdd:cd00046 6 ITAPTGSGKTLAALLAALLLLLKKGKK-VLVLVPTKALALQTAERLRE-LFGPGIRVAVLvgGSSAEEREKNKLGDADII 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 503622760 233 IFTQERLLSFLSATD--VEPQIDTLIVDEAHEIQNGKRGIILQTAIDIALRKFcNAKLLFAS 292
Cdd:cd00046 84 IATPDMLLNLLLREDrlFLKDLKLIIVDEAHALLIDSRGALILDLAVRKAGLK-NAQVILLS 144
|
|
| DEXHc_SKIV2L |
cd18027 |
DEXH-box helicase domain of SKIV2L; Superkiller viralicidic activity 2-like (SKIV2L, also ... |
135-321 |
3.69e-05 |
|
DEXH-box helicase domain of SKIV2L; Superkiller viralicidic activity 2-like (SKIV2L, also called SKI2 or DHX13) plays a role in a number of cellular processes involving alteration of RNA secondary structure such as translation initiation, nuclear and mitochondrial splicing, and ribosome and spliceosome assembly. SKIV2L belongs to the type II DEAD box helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350785 [Multi-domain] Cd Length: 179 Bit Score: 45.33 E-value: 3.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 135 QLTDFQLQLFRSLESEQNLSISAPTSAGKSFVLNLSLSnqIKEKSCNSIVYVVPTRALISEVSTRVRSAIKRIGQDKAII 214
Cdd:cd18027 8 ELDVFQKQAILHLEAGDSVFVAAHTSAGKTVVAEYAIA--LAQKHMTRTIYTSPIKALSNQKFRDFKNTFGDVGLITGDV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 215 RTTPfpvdrtkvrTNVVYIFTQERLLSFL-SATDVEPQIDTLIVDEAHEIQNGKRGIILQTAIdIALRKFCNAKLLFASp 293
Cdd:cd18027 86 QLNP---------EASCLIMTTEILRSMLyNGSDVIRDLEWVIFDEVHYINDAERGVVWEEVL-IMLPDHVSIILLSAT- 154
|
170 180
....*....|....*....|....*...
gi 503622760 294 lIQNPEYFLSLFQRTSNGKFFteVISPV 321
Cdd:cd18027 155 -VPNTVEFADWIGRIKKKNIY--VISTP 179
|
|
| SF2_C_LHR |
cd18796 |
C-terminal helicase domain of LHR family helicases; Large helicase-related protein (LHR) is a ... |
436-510 |
1.05e-04 |
|
C-terminal helicase domain of LHR family helicases; Large helicase-related protein (LHR) is a DNA damage-inducible helicase that uses ATP hydrolysis to drive unidirectional 3'-to-5' translocation along single-stranded DNA (ssDNA) and to unwind RNA:DNA duplexes. This group also includes related bacterial and archaeal helicases. LHR family helicases are DEAD-like helicases belonging to superfamily (SF)2, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF1 helicases, SF2 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Pssm-ID: 350183 [Multi-domain] Cd Length: 150 Bit Score: 43.41 E-value: 1.05e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 503622760 436 IAFHYGNMPSLLRTGVEDLFRNGDVKVVFCTSTLLQGVNLPA-KHII-IENPKSgdngmtRADFLNLAGRAGRLLNE 510
Cdd:cd18796 71 IALHHGSLSRELREEVEAALKRGDLKVVVATSSLELGIDIGDvDLVIqIGSPKS------VARLLQRLGRSGHRPGA 141
|
|
| DEXHc_HFM1 |
cd18023 |
DEXH-box helicase domain of ATP-dependent DNA helicase HFM1; HFM1 is a type II DEAD box ... |
132-273 |
1.06e-04 |
|
DEXH-box helicase domain of ATP-dependent DNA helicase HFM1; HFM1 is a type II DEAD box helicase, required for crossover formation and complete synapsis of homologous chromosomes during meiosis. HFM1 belongs to the type II DEAD box helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350781 [Multi-domain] Cd Length: 206 Bit Score: 44.27 E-value: 1.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 132 NEIQLTDFQLqlfrSLESEQNLSISAPTSAGKSFVLNLSLSNQIKEKSCNS-----IVYVVPTRALISEVSTRVRSAIKR 206
Cdd:cd18023 3 NRIQSEVFPD----LLYSDKNFVVSAPTGSGKTVLFELAILRLLKERNPLPwgnrkVVYIAPIKALCSEKYDDWKEKFGP 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 207 IG------------------QDKAIIRTTPFPVDR-TKVRTNVVYIFTQERLlsflsatdvepqidtLIVDEAHEIqNGK 267
Cdd:cd18023 79 LGlscaeltgdtemddtfeiQDADIILTTPEKWDSmTRRWRDNGNLVQLVAL---------------VLIDEVHII-KEN 142
|
....*.
gi 503622760 268 RGIILQ 273
Cdd:cd18023 143 RGATLE 148
|
|
| DEXHc_ASCC3_1 |
cd18020 |
N-terminal DEXH-box helicase domain of Activating signal cointegrator 1 complex subunit 3; ... |
149-282 |
1.28e-04 |
|
N-terminal DEXH-box helicase domain of Activating signal cointegrator 1 complex subunit 3; Activating signal cointegrator 1 complex subunit 3 (ASCC3) is a type II DEAD box helicase that plays a role in the repair of N-alkylated nucleotides. ASCC3 belongs to the type II DEAD box helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350778 [Multi-domain] Cd Length: 199 Bit Score: 43.96 E-value: 1.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 149 SEQNLSISAPTSAGKSFVLNLSLSNQIKE---------KSCNSIVYVVPTRALISEVSTRVRSAIKRIG----------- 208
Cdd:cd18020 16 TNENMLICAPTGAGKTNIAMLTILHEIRQhvnqggvikKDDFKIVYIAPMKALAAEMVEKFSKRLAPLGikvkeltgdmq 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 209 ------QDKAIIRTTPFPVDRTKVRTNvvyiftqerllsflSATDVEPQIDTLIVDEAHeIQNGKRGIILQTAIDIALRK 282
Cdd:cd18020 96 ltkkeiAETQIIVTTPEKWDVVTRKSS--------------GDVALSQLVRLLIIDEVH-LLHDDRGPVIESLVARTLRQ 160
|
|
| Lhr |
COG1201 |
Lhr-like helicase [Replication, recombination and repair]; |
136-505 |
3.99e-04 |
|
Lhr-like helicase [Replication, recombination and repair];
Pssm-ID: 440814 [Multi-domain] Cd Length: 850 Bit Score: 43.94 E-value: 3.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 136 LTDFQLQLFRSLESEQNLSISAPTSAGKSF-----VLN--LSLSNQIKEKSCNSIVYVVPTRALISEVSTRVRSAIKRIG 208
Cdd:COG1201 25 PTPPQREAWPAIAAGESTLLIAPTGSGKTLaaflpALDelARRPRPGELPDGLRVLYISPLKALANDIERNLRAPLEEIG 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 209 QDKAI--------IRT--TPfPVDRTKVRTNVVYI-----------FTQERLLSFLSatDVEpqidTLIVDEAHEIQNGK 267
Cdd:COG1201 105 EAAGLplpeirvgVRTgdTP-ASERQRQRRRPPHIlittpeslallLTSPDARELLR--GVR----TVIVDEIHALAGSK 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 268 RGIilQTAIDIA-LRKFCNAKL----LFASplIQNPEY---FLSLFQRTSNG---------KFFTEVISPVSqnillvNQ 330
Cdd:COG1201 178 RGV--HLALSLErLRALAPRPLqrigLSAT--VGPLEEvarFLVGYEDPRPVtivdagagkKPDLEVLVPVE------DL 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 331 VARKPTKMHisllnsigtteIGEFVLPfqlrnskhqQIANLalsLSDDDSVIAFSNTPSSAEeravqaaQLAQNIdvsed 410
Cdd:COG1201 248 IERFPWAGH-----------LWPHLYP---------RVLDL---IEAHRTTLVFTNTRSQAE-------RLFQRL----- 292
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 411 iemfisfikQEIHPNYALInclkkgIAFHYGnmpSL---LRTGVEDLFRNGDVKVVFCTSTLLQGVNLPAkhiI-----I 482
Cdd:COG1201 293 ---------NELNPEDALP------IAAHHG---SLsreQRLEVEEALKAGELRAVVATSSLELGIDIGD---VdlviqV 351
|
410 420
....*....|....*....|...
gi 503622760 483 ENPKSGDNGMTRadflnlAGRAG 505
Cdd:COG1201 352 GSPKSVARLLQR------IGRAG 368
|
|
| DEXHc_RE |
cd17926 |
DEXH-box helicase domain of DEAD-like helicase restriction enzyme family proteins; This family ... |
136-263 |
6.02e-04 |
|
DEXH-box helicase domain of DEAD-like helicase restriction enzyme family proteins; This family is composed of helicase restriction enzymes and similar proteins such as TFIIH basal transcription factor complex helicase XPB subunit. These proteins are part of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350684 [Multi-domain] Cd Length: 146 Bit Score: 41.14 E-value: 6.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 136 LTDFQLQ-LFRSLESEQN--LSISAPTSAGKSFVLnLSLSNQIKEKScnsIVYVVPTRALIsevsTRVRSAIKRIGQDKA 212
Cdd:cd17926 1 LRPYQEEaLEAWLAHKNNrrGILVLPTGSGKTLTA-LALIAYLKELR---TLIVVPTDALL----DQWKERFEDFLGDSS 72
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 503622760 213 IIRttpFPVDRTKVRTNVVYIFTQERLLSFLSAT--DVEPQIDTLIVDEAHEI 263
Cdd:cd17926 73 IGL---IGGGKKKDFDDANVVVATYQSLSNLAEEekDLFDQFGLLIVDEAHHL 122
|
|
| DEXHc_Brr2_1 |
cd18019 |
N-terminal DEXH-box helicase domain of spliceosomal Brr2 RNA helicase; Brr2 is a type II DEAD ... |
135-196 |
1.46e-03 |
|
N-terminal DEXH-box helicase domain of spliceosomal Brr2 RNA helicase; Brr2 is a type II DEAD box helicase that mediates spliceosome catalytic activation. It is a stable subunit of the spliceosome, required during splicing catalysis and spliceosome disassembly. Brr2 belongs to the type II DEAD box helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350777 [Multi-domain] Cd Length: 214 Bit Score: 40.82 E-value: 1.46e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 503622760 135 QLTDFQLQLFRS-LESEQNLSISAPTSAGKSFVLNLSLSNQI-----KEKSCN----SIVYVVPTRALISEV 196
Cdd:cd18019 17 SLNRIQSKLFPAaFETDENLLLCAPTGAGKTNVALLTILREIgkhrnPDGTINldafKIVYIAPMKALVQEM 88
|
|
| Cas3_I |
cd09639 |
CRISPR/Cas system-associated protein Cas3; CRISPR (Clustered Regularly Interspaced Short ... |
153-313 |
2.09e-03 |
|
CRISPR/Cas system-associated protein Cas3; CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; DEAD/DEAH box helicase DNA helicase cas3'; Often but not always is fused to HD nuclease domain; signature gene for Type I
Pssm-ID: 187770 [Multi-domain] Cd Length: 353 Bit Score: 41.26 E-value: 2.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 153 LSISAPTSAGKSFVLNLSLSNQIKEKSCNSIVYVVPTRALISEVSTRVRSAIKRIGQDKAIIRTTPF-----------PV 221
Cdd:cd09639 2 LVIEAPTGYGKTEAALLWALHSLKSQKADRVIIALPTRATINAMYRRAKEAFGETGLYHSSILSSRIkemgdseefehLF 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 222 DRTKVRTNVVYIF-----TQERLLSFLSATDVEPQIDT-------LIVDEAHEIQNGKRGIILqTAIDIALRKfcNAKLL 289
Cdd:cd09639 82 PLYIHSNDTLFLDpitvcTIDQVLKSVFGEFGHYEFTLasianslLIFDEVHFYDEYTLALIL-AVLEVLKDN--DVPIL 158
|
170 180
....*....|....*....|....
gi 503622760 290 FASPLIqnPEYFLSLFQRTSNGKF 313
Cdd:cd09639 159 LMSATL--PKFLKEYAEKIGYVEE 180
|
|
| SSL2 |
COG1061 |
Superfamily II DNA or RNA helicase [Transcription, Replication, recombination, and repair]; |
51-261 |
2.24e-03 |
|
Superfamily II DNA or RNA helicase [Transcription, Replication, recombination, and repair];
Pssm-ID: 440681 [Multi-domain] Cd Length: 566 Bit Score: 41.55 E-value: 2.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 51 SLGTSDDVNESYEIITRLLEETSGNSKLVKGAAEVILSRIGNFPGRDLLRSRYAIESGIPAPLRLEIIARESEntitdET 130
Cdd:COG1061 1 VLLRGIAERGADKLRSSLLLLDLERLELSLLRNLVEARRLAIKEGTREDGRRLPEEDTERELAEAEALEAGDE-----AS 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503622760 131 DNEIQLTDFQLQLFRSLESE-----QNLSISAPTSAGKSFVLnLSLSNQIKEKscNSIVYVVPTRALisevstrVRSAIK 205
Cdd:COG1061 76 GTSFELRPYQQEALEALLAAlerggGRGLVVAPTGTGKTVLA-LALAAELLRG--KRVLVLVPRREL-------LEQWAE 145
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 503622760 206 RIGQdkaiIRTTPFPVDRTKVRTNVVYIFTQERLLSFLSATDVEPQIDTLIVDEAH 261
Cdd:COG1061 146 ELRR----FLGDPLAGGGKKDSDAPITVATYQSLARRAHLDELGDRFGLVIIDEAH 197
|
|
| |
