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Conserved domains on  [gi|503716438|ref|WP_013950514|]
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DUF1289 domain-containing protein [Hyphomicrobium sp. 802]

Protein Classification

DUF1289 domain-containing protein( domain architecture ID 10536542)

DUF1289 domain-containing protein similar to Escherichia coli YdhL

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1289 pfam06945
Protein of unknown function (DUF1289); This family consists of a number of hypothetical ...
 5-52 9.70e-12

Protein of unknown function (DUF1289); This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N-terminus. The function of this family is unknown. Structural modelling suggests this domain may bind nucleic acids.


:

Pssm-ID: 462046  Cd Length: 47  Bit Score: 55.26  E-value: 9.70e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 503716438    5 SPCIDVCKFKHAGHCIGCGMTKKQRKKFKRLDGRkAKLAFIEALRLRQ 52
Cdd:pfam06945   1 SPCIGVCSLDEDGLCRGCGRTLDEIAGWSRMSDE-ERRAVLARLPQRR 47
 
Name Accession Description Interval E-value
DUF1289 pfam06945
Protein of unknown function (DUF1289); This family consists of a number of hypothetical ...
 5-52 9.70e-12

Protein of unknown function (DUF1289); This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N-terminus. The function of this family is unknown. Structural modelling suggests this domain may bind nucleic acids.


Pssm-ID: 462046  Cd Length: 47  Bit Score: 55.26  E-value: 9.70e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 503716438    5 SPCIDVCKFKHAGHCIGCGMTKKQRKKFKRLDGRkAKLAFIEALRLRQ 52
Cdd:pfam06945   1 SPCIGVCSLDEDGLCRGCGRTLDEIAGWSRMSDE-ERRAVLARLPQRR 47
YdhL COG3313
Predicted Fe-S protein YdhL, DUF1289 family [General function prediction only];
5-52 1.89e-05

Predicted Fe-S protein YdhL, DUF1289 family [General function prediction only];


Pssm-ID: 442542  Cd Length: 59  Bit Score: 39.14  E-value: 1.89e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 503716438   5 SPCIDVCKFKHA-GHCIGCGMTKKQRKKFKRLDGrKAKLAFIEALRLRQ 52
Cdd:COG3313    9 SPCIGVCSLDPEdGVCRGCGRTLDEIARWSKMSD-EERRAVLRRLPQRR 56
 
Name Accession Description Interval E-value
DUF1289 pfam06945
Protein of unknown function (DUF1289); This family consists of a number of hypothetical ...
 5-52 9.70e-12

Protein of unknown function (DUF1289); This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N-terminus. The function of this family is unknown. Structural modelling suggests this domain may bind nucleic acids.


Pssm-ID: 462046  Cd Length: 47  Bit Score: 55.26  E-value: 9.70e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 503716438    5 SPCIDVCKFKHAGHCIGCGMTKKQRKKFKRLDGRkAKLAFIEALRLRQ 52
Cdd:pfam06945   1 SPCIGVCSLDEDGLCRGCGRTLDEIAGWSRMSDE-ERRAVLARLPQRR 47
YdhL COG3313
Predicted Fe-S protein YdhL, DUF1289 family [General function prediction only];
5-52 1.89e-05

Predicted Fe-S protein YdhL, DUF1289 family [General function prediction only];


Pssm-ID: 442542  Cd Length: 59  Bit Score: 39.14  E-value: 1.89e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 503716438   5 SPCIDVCKFKHA-GHCIGCGMTKKQRKKFKRLDGrKAKLAFIEALRLRQ 52
Cdd:COG3313    9 SPCIGVCSLDPEdGVCRGCGRTLDEIARWSKMSD-EERRAVLRRLPQRR 56
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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