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Conserved domains on  [gi|503852773|ref|WP_014086767|]
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DUF4845 domain-containing protein [Pseudogulbenkiania sp. NH8B]

Protein Classification

DUF4845 domain-containing protein( domain architecture ID 11241188)

DUF4845 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4845 pfam16137
Domain of unknown function (DUF4845); This family consists of uncharacterized proteins around ...
 29-110 4.14e-19

Domain of unknown function (DUF4845); This family consists of uncharacterized proteins around 120 residues in length and is mainly found in various Pseudomonas species. Distant homology analysis suggests that proteins from this family are related to pilin type IV proteins from the Bundlin (PF05307) family, this prediction is however not confirmed by any experimental evidence


:

Pssm-ID: 435163  Cd Length: 85  Bit Score: 75.26  E-value: 4.14e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503852773   29 KVIPVYTEYSAVKQAVRDVA---GETSASEYQIRKDFNTKADVADISSIRGQNLEVVAGAGVVHVRAAYRREVPLFANVG 105
Cdd:pfam16137   1 KLVPAYLEYFSVKKALKSLAndpGLAGMSVAEIRSSFDKRADINNIRSIKGEDLKIEKSGGGVVVSVDYEVRIPLFGNVD 80


                  ....*
gi 503852773  106 LIFDF 110
Cdd:pfam16137  81 LVIDF 85
PRK10574 super family cl29673
putative major pilin subunit; Provisional
 4-37 8.07e-03

putative major pilin subunit; Provisional


The actual alignment was detected with superfamily member PRK10574:

Pssm-ID: 236718 [Multi-domain]  Cd Length: 146  Bit Score: 33.85  E-value: 8.07e-03
                         10        20        30
                 ....*....|....*....|....*....|....
gi 503852773   4 TQRGFTIIStmlLMVFIGGIILLSFKVIPVYTEY 37
Cdd:PRK10574   3 KQRGFTLIE---LMVVIAIIAILSAIGIPAYQNY 33
 
Name Accession Description Interval E-value
DUF4845 pfam16137
Domain of unknown function (DUF4845); This family consists of uncharacterized proteins around ...
 29-110 4.14e-19

Domain of unknown function (DUF4845); This family consists of uncharacterized proteins around 120 residues in length and is mainly found in various Pseudomonas species. Distant homology analysis suggests that proteins from this family are related to pilin type IV proteins from the Bundlin (PF05307) family, this prediction is however not confirmed by any experimental evidence


Pssm-ID: 435163  Cd Length: 85  Bit Score: 75.26  E-value: 4.14e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503852773   29 KVIPVYTEYSAVKQAVRDVA---GETSASEYQIRKDFNTKADVADISSIRGQNLEVVAGAGVVHVRAAYRREVPLFANVG 105
Cdd:pfam16137   1 KLVPAYLEYFSVKKALKSLAndpGLAGMSVAEIRSSFDKRADINNIRSIKGEDLKIEKSGGGVVVSVDYEVRIPLFGNVD 80


                  ....*
gi 503852773  106 LIFDF 110
Cdd:pfam16137  81 LVIDF 85
PilA COG4969
Type IV pilus assembly protein, major pilin PilA [Cell motility, Extracellular structures];
1-71 2.87e-03

Type IV pilus assembly protein, major pilin PilA [Cell motility, Extracellular structures];


Pssm-ID: 443995 [Multi-domain]  Cd Length: 134  Bit Score: 35.07  E-value: 2.87e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 503852773   1 MQRTQRGFTIISTMLLMVFIGgiILLSFkVIPVYTEY---SAVKQAVRDVAG-ETSASEYQIRKDFNTKADVADI 71
Cdd:COG4969    1 MKKKQKGFTLIELMIVVAIIG--ILAAI-AIPAYQDYvarARVSEALALASPlKTAVEECALENGSLPNCNAGDN 72
PRK10574 PRK10574
putative major pilin subunit; Provisional
 4-37 8.07e-03

putative major pilin subunit; Provisional


Pssm-ID: 236718 [Multi-domain]  Cd Length: 146  Bit Score: 33.85  E-value: 8.07e-03
                         10        20        30
                 ....*....|....*....|....*....|....
gi 503852773   4 TQRGFTIIStmlLMVFIGGIILLSFKVIPVYTEY 37
Cdd:PRK10574   3 KQRGFTLIE---LMVVIAIIAILSAIGIPAYQNY 33
 
Name Accession Description Interval E-value
DUF4845 pfam16137
Domain of unknown function (DUF4845); This family consists of uncharacterized proteins around ...
 29-110 4.14e-19

Domain of unknown function (DUF4845); This family consists of uncharacterized proteins around 120 residues in length and is mainly found in various Pseudomonas species. Distant homology analysis suggests that proteins from this family are related to pilin type IV proteins from the Bundlin (PF05307) family, this prediction is however not confirmed by any experimental evidence


Pssm-ID: 435163  Cd Length: 85  Bit Score: 75.26  E-value: 4.14e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503852773   29 KVIPVYTEYSAVKQAVRDVA---GETSASEYQIRKDFNTKADVADISSIRGQNLEVVAGAGVVHVRAAYRREVPLFANVG 105
Cdd:pfam16137   1 KLVPAYLEYFSVKKALKSLAndpGLAGMSVAEIRSSFDKRADINNIRSIKGEDLKIEKSGGGVVVSVDYEVRIPLFGNVD 80


                  ....*
gi 503852773  106 LIFDF 110
Cdd:pfam16137  81 LVIDF 85
PilA COG4969
Type IV pilus assembly protein, major pilin PilA [Cell motility, Extracellular structures];
1-71 2.87e-03

Type IV pilus assembly protein, major pilin PilA [Cell motility, Extracellular structures];


Pssm-ID: 443995 [Multi-domain]  Cd Length: 134  Bit Score: 35.07  E-value: 2.87e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 503852773   1 MQRTQRGFTIISTMLLMVFIGgiILLSFkVIPVYTEY---SAVKQAVRDVAG-ETSASEYQIRKDFNTKADVADI 71
Cdd:COG4969    1 MKKKQKGFTLIELMIVVAIIG--ILAAI-AIPAYQDYvarARVSEALALASPlKTAVEECALENGSLPNCNAGDN 72
PRK10574 PRK10574
putative major pilin subunit; Provisional
 4-37 8.07e-03

putative major pilin subunit; Provisional


Pssm-ID: 236718 [Multi-domain]  Cd Length: 146  Bit Score: 33.85  E-value: 8.07e-03
                         10        20        30
                 ....*....|....*....|....*....|....
gi 503852773   4 TQRGFTIIStmlLMVFIGGIILLSFKVIPVYTEY 37
Cdd:PRK10574   3 KQRGFTLIE---LMVVIAIIAILSAIGIPAYQNY 33
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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