NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|503938003|ref|WP_014171997|]
View 

MULTISPECIES: sn-glycerol-3-phosphate ABC transporter permease UgpE [Enterobacter]

Protein Classification

sn-glycerol-3-phosphate ABC transporter permease UgpE( domain architecture ID 10793514)

sn-glycerol-3-phosphate ABC transporter permease UgpE is part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PRK10973 PRK10973
sn-glycerol-3-phosphate ABC transporter permease UgpE;
1-281 2.06e-177

sn-glycerol-3-phosphate ABC transporter permease UgpE;


:

Pssm-ID: 182875 [Multi-domain]  Cd Length: 281  Bit Score: 490.02  E-value: 2.06e-177
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503938003   1 MIENRRGLTMFSHTMLILGIIVILFPLYVAFVAATLDTKAVFDTPMTLIPGGHLFENMKTIWTQGVGANSAPFWLMMLNS 80
Cdd:PRK10973   1 MIENRRGLDIFSHTMLILGIAVILFPLYVAFVAATLDKQAVFAVPMTLIPGTHLLENIANIWVNGVGNNSAPFGRMLLNS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503938003  81 FIMAFGITVGKITVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLKMLDSYAGLTLPLMASATATF 160
Cdd:PRK10973  81 FVMAFSITVGKITVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLKMLDSYAGLTLPLMASATATF 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503938003 161 LFRQFFMTLPDELIEAARIDGASPMRFFRDIVLPLSKTNLAALFVITFIYGWNQYLWPLLIIQDVNLGTAVAGIKGMIAT 240
Cdd:PRK10973 161 LFRQFFMTLPDELVEAARIDGASPMRFFWDIVLPLSKTNLAALFVITFIYGWNQYLWPLLIITDVSLGTAVAGIKGMIAT 240

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 503938003 241 GEGTTLWNQVMAAMLLTLIPPVVIVLAMQRAFVRGLVDSEK 281
Cdd:PRK10973 241 GEGTTEWNQVMAAMLLTLIPPVVIVLAMQRAFVRGLVDSEK 281
 
Name Accession Description Interval E-value
PRK10973 PRK10973
sn-glycerol-3-phosphate ABC transporter permease UgpE;
1-281 2.06e-177

sn-glycerol-3-phosphate ABC transporter permease UgpE;


Pssm-ID: 182875 [Multi-domain]  Cd Length: 281  Bit Score: 490.02  E-value: 2.06e-177
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503938003   1 MIENRRGLTMFSHTMLILGIIVILFPLYVAFVAATLDTKAVFDTPMTLIPGGHLFENMKTIWTQGVGANSAPFWLMMLNS 80
Cdd:PRK10973   1 MIENRRGLDIFSHTMLILGIAVILFPLYVAFVAATLDKQAVFAVPMTLIPGTHLLENIANIWVNGVGNNSAPFGRMLLNS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503938003  81 FIMAFGITVGKITVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLKMLDSYAGLTLPLMASATATF 160
Cdd:PRK10973  81 FVMAFSITVGKITVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLKMLDSYAGLTLPLMASATATF 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503938003 161 LFRQFFMTLPDELIEAARIDGASPMRFFRDIVLPLSKTNLAALFVITFIYGWNQYLWPLLIIQDVNLGTAVAGIKGMIAT 240
Cdd:PRK10973 161 LFRQFFMTLPDELVEAARIDGASPMRFFWDIVLPLSKTNLAALFVITFIYGWNQYLWPLLIITDVSLGTAVAGIKGMIAT 240

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 503938003 241 GEGTTLWNQVMAAMLLTLIPPVVIVLAMQRAFVRGLVDSEK 281
Cdd:PRK10973 241 GEGTTEWNQVMAAMLLTLIPPVVIVLAMQRAFVRGLVDSEK 281
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 11-277 1.08e-82

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 250.01  E-value: 1.08e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503938003  11 FSHTMLILGIIVILFPLYVAFVAATLDTKAVFDTPMTLIPGGHLFENMKTIWTQGvgansaPFWLMMLNSFIMAFGITVG 90
Cdd:COG0395   16 LLYLLLILLALLFLFPLYWMVVTSFKPPAEIFSGPPSLLPSEFTLENYRAAFTDG------PFGRYLLNSLIVAVVSTVL 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503938003  91 KITVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLKMLDSYAGLTLPLMA--SATATFLFRQFFMT 168
Cdd:COG0395   90 SLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAfgLPFGIFLLRQFFRS 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503938003 169 LPDELIEAARIDGASPMRFFRDIVLPLSKTNLAALFVITFIYGWNQYLWPLLIIQDVNLGTAVAGIKGMIatGEGTTLWN 248
Cdd:COG0395  170 IPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLTSPDLRTLPVGLASFQ--GQYGTDWG 247

                        250       260
                 ....*....|....*....|....*....
gi 503938003 249 QVMAAMLLTLIPPVVIVLAMQRAFVRGLV 277
Cdd:COG0395  248 LLMAAAVIATLPVLILFLFLQRYFVRGLT 276
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 77-259 7.19e-13

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 65.76  E-value: 7.19e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503938003  77 MLNSFIMAFGITVGKITVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLKMLDSYAGLTLP----- 151
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPalila 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503938003 152 -LMASATATFLFRQFFMTLPDELIEAARIDGASPMRFFRDIVLPLSKTNLAALFVITFIYGWNQYLWPLLIIQDVNLGTA 230
Cdd:cd06261   81 lLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160

                        170       180
                 ....*....|....*....|....*....
gi 503938003 231 VAGIKGMIATGEGTTLWNQVMAAMLLTLI 259
Cdd:cd06261  161 TGLLLIFAILFPGDLGVAAAVALILLLLS 189
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 96-276 8.11e-13

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 65.40  E-value: 8.11e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503938003   96 MLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLKMLDS--YAGLTLPLMASATATFLFRQFFMTLPDEL 173
Cdd:pfam00528   3 PLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGilPAIILALLGWAGYARLIRRAALRSLPSDL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503938003  174 IEAARIDGASPMRFFRDIVLPLSKTNLAALFVITFIYGWNQYLWPLLIIQDVNLGTAVAgikgMIATGEGTTLWNQVMAA 253
Cdd:pfam00528  83 VEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLI----EAILGYDYPEIQGPVLA 158

                         170       180
                  ....*....|....*....|...
gi 503938003  254 MLLTLIPPVVIVLAMQRAFVRGL 276
Cdd:pfam00528 159 AALILLLLNLLVDILQRLLDPRV 181
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 16-210 2.21e-03

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 39.28  E-value: 2.21e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503938003   16 LILGIIVILFPLYVAFVAATLDTKAVFDTPMTLIPGGHLFENMKTiwtqgvgansAPFWLMMLNSFIMAFGITVGKITVS 95
Cdd:TIGR03262   5 LLLAGMILALLLFLLLPLLALLTKSVYDSDGDFIGLANFAEYFAT----------PGLLQSLGNSLTVSAIVTAIVVPLA 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503938003   96 MLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLKMLDSYAGLT----LPLMASATATFLFRQFFMTL-- 169
Cdd:TIGR03262  75 FAFAYALTRSRIPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQGLLKGLLGGFsiygFWGIVIGEVFYTFPHALMILvt 154

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 503938003  170 -----PDELIEAARIDGASPMRFFRDIVLPLSKTNLAALFVITFIY 210
Cdd:TIGR03262 155 alslaDGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTL 200
 
Name Accession Description Interval E-value
PRK10973 PRK10973
sn-glycerol-3-phosphate ABC transporter permease UgpE;
1-281 2.06e-177

sn-glycerol-3-phosphate ABC transporter permease UgpE;


Pssm-ID: 182875 [Multi-domain]  Cd Length: 281  Bit Score: 490.02  E-value: 2.06e-177
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503938003   1 MIENRRGLTMFSHTMLILGIIVILFPLYVAFVAATLDTKAVFDTPMTLIPGGHLFENMKTIWTQGVGANSAPFWLMMLNS 80
Cdd:PRK10973   1 MIENRRGLDIFSHTMLILGIAVILFPLYVAFVAATLDKQAVFAVPMTLIPGTHLLENIANIWVNGVGNNSAPFGRMLLNS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503938003  81 FIMAFGITVGKITVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLKMLDSYAGLTLPLMASATATF 160
Cdd:PRK10973  81 FVMAFSITVGKITVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLKMLDSYAGLTLPLMASATATF 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503938003 161 LFRQFFMTLPDELIEAARIDGASPMRFFRDIVLPLSKTNLAALFVITFIYGWNQYLWPLLIIQDVNLGTAVAGIKGMIAT 240
Cdd:PRK10973 161 LFRQFFMTLPDELVEAARIDGASPMRFFWDIVLPLSKTNLAALFVITFIYGWNQYLWPLLIITDVSLGTAVAGIKGMIAT 240

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 503938003 241 GEGTTLWNQVMAAMLLTLIPPVVIVLAMQRAFVRGLVDSEK 281
Cdd:PRK10973 241 GEGTTEWNQVMAAMLLTLIPPVVIVLAMQRAFVRGLVDSEK 281
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 11-277 1.08e-82

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 250.01  E-value: 1.08e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503938003  11 FSHTMLILGIIVILFPLYVAFVAATLDTKAVFDTPMTLIPGGHLFENMKTIWTQGvgansaPFWLMMLNSFIMAFGITVG 90
Cdd:COG0395   16 LLYLLLILLALLFLFPLYWMVVTSFKPPAEIFSGPPSLLPSEFTLENYRAAFTDG------PFGRYLLNSLIVAVVSTVL 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503938003  91 KITVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLKMLDSYAGLTLPLMA--SATATFLFRQFFMT 168
Cdd:COG0395   90 SLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAfgLPFGIFLLRQFFRS 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503938003 169 LPDELIEAARIDGASPMRFFRDIVLPLSKTNLAALFVITFIYGWNQYLWPLLIIQDVNLGTAVAGIKGMIatGEGTTLWN 248
Cdd:COG0395  170 IPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLTSPDLRTLPVGLASFQ--GQYGTDWG 247

                        250       260
                 ....*....|....*....|....*....
gi 503938003 249 QVMAAMLLTLIPPVVIVLAMQRAFVRGLV 277
Cdd:COG0395  248 LLMAAAVIATLPVLILFLFLQRYFVRGLT 276
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 9-276 8.37e-37

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 131.81  E-value: 8.37e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503938003   9 TMFSHTMLILGIIVILFPLYVAFVAATLDTKAVFDTpmTLIPGGHLFENMKTIWTQGvgansaPFWLMMLNSFIMAFGIT 88
Cdd:COG3833   15 LGLRHLVLIILAIIALFPILWVVSASFNPGGSLYSS--SLIPENFTLENYKKLFTET------PFLRWFLNSLIVAVVTA 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503938003  89 VGKITVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLKMLDSYAGLTLPLMASATA--TFLFRQFF 166
Cdd:COG3833   87 IISVFLAALAAYAFSRFRFKGRKAGLLALLLLQMFPAFLALVALYLLLSALGLLNTLLGLILVYLGGAIPfnTWLMKGYF 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503938003 167 MTLPDELIEAARIDGASPMRFFRDIVLPLSKTNLAALFVITFIYGWNQYLWPLLIIQDVNLGTAVAGIKGMIaTGEGTTL 246
Cdd:COG3833  167 DTIPKELDEAAKIDGASHFQIFFRIILPLAKPILAVVALLSFIGPWNDFILASVLLRSPENYTLAVGLYSFV-SDQRNTN 245

                        250       260       270
                 ....*....|....*....|....*....|
gi 503938003 247 WNQVMAAMLLTLIPPVVIVLAMQRAFVRGL 276
Cdd:COG3833  246 WGVFAAGAVLVAIPIVILFLFLQRYLVSGL 275
malG PRK10998
maltose ABC transporter permease MalG;
72-276 1.28e-13

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 69.35  E-value: 1.28e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503938003  72 PFWLMMLNSFIMAFGITVGKITVSMLSAFAIVWFRFPLRN------LFFWMIFITLMLPVEVRIFPTVEVIANLKMLDSY 145
Cdd:PRK10998  80 PVLLWLWNSVKVAGITAIGIVALSTTCAYAFARMRFKGKAtllkgmLIFQMFPAVLSLVALYALFDRLGQYIPFIGLNTH 159

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503938003 146 AGLTLPLMAS-ATATFLFRQFFMTLPDELIEAARIDGASPMRFFRDIVLPLSKTNLAALFVITFIYGWNQYLWPLLIIQD 224
Cdd:PRK10998 160 GGVIFAYLGGiALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLRD 239

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 503938003 225 VNLGTAVAGIKGMIAtgEGTTLWNQVMAAMLLTLIPPVVIVLAMQRAFVRGL 276
Cdd:PRK10998 240 VNSYTLAVGMQQYLN--PQNYLWGDFAAAAVLSAIPITVVFLLAQRWLVGGL 289
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 77-259 7.19e-13

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 65.76  E-value: 7.19e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503938003  77 MLNSFIMAFGITVGKITVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLKMLDSYAGLTLP----- 151
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPalila 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503938003 152 -LMASATATFLFRQFFMTLPDELIEAARIDGASPMRFFRDIVLPLSKTNLAALFVITFIYGWNQYLWPLLIIQDVNLGTA 230
Cdd:cd06261   81 lLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160

                        170       180
                 ....*....|....*....|....*....
gi 503938003 231 VAGIKGMIATGEGTTLWNQVMAAMLLTLI 259
Cdd:cd06261  161 TGLLLIFAILFPGDLGVAAAVALILLLLS 189
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 96-276 8.11e-13

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 65.40  E-value: 8.11e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503938003   96 MLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLKMLDS--YAGLTLPLMASATATFLFRQFFMTLPDEL 173
Cdd:pfam00528   3 PLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGilPAIILALLGWAGYARLIRRAALRSLPSDL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503938003  174 IEAARIDGASPMRFFRDIVLPLSKTNLAALFVITFIYGWNQYLWPLLIIQDVNLGTAVAgikgMIATGEGTTLWNQVMAA 253
Cdd:pfam00528  83 VEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLI----EAILGYDYPEIQGPVLA 158

                         170       180
                  ....*....|....*....|...
gi 503938003  254 MLLTLIPPVVIVLAMQRAFVRGL 276
Cdd:pfam00528 159 AALILLLLNLLVDILQRLLDPRV 181
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
73-210 8.81e-11

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 62.10  E-value: 8.81e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503938003  73 FWLMMLNSFIMAFGITVGKITVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVEV------RIFPTVEVIANLkmLDSYA 146
Cdd:COG1178   52 LWRALGNTLLLALLVTLLSLLLGVPLAWLLARTDFPGRRLLRWLLLLPLALPPYVvalawiALFGPNGLLNTL--LRALF 129

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 503938003 147 GLTLPLMASAT-------------ATFLFRQFFMTLPDELIEAARIDGASPMRFFRDIVLPLSKTNLAALFVITFIY 210
Cdd:COG1178  130 GLEPPDIYGLGgiilvlvlfnypyVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLL 206
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 4-215 6.03e-10

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 58.20  E-value: 6.03e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503938003   4 NRRGLTMFSHTMLILGIIVILFPLYVAFVAAtldtkavFDTP--MTLIPGGHLFENMKTIWtqgvgaNSAPFWLMMLNSF 81
Cdd:COG1177    1 SSRLGRLLLRLFLALVLLFLYLPILVLVLYS-------FNDSwfLTFPPEGFTLRWYAELF------SDPRLLDALLNSL 67

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503938003  82 IMAFGITVGKITVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLKMLDSYAGLTLP--LMASATAT 159
Cdd:COG1177   68 LIALLSTLLATVLGTPAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLWGLILAhvVFTLPFVV 147

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 503938003 160 FLFRQFFMTLPDELIEAARIDGASPMRFFRDIVLPLSKTNLAALFVITFIYGWNQY 215
Cdd:COG1177  148 LVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEF 203
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
16-215 2.26e-07

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 50.90  E-value: 2.26e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503938003  16 LILGIIVILFPLYVAFVAATLDTKaVFDTPMTLIPgghlFENMKTIWTqgvganSAPFWLMMLNSFIMAFGITVGKITVS 95
Cdd:COG1175   28 LLLLLVFVLYPLLYTLYLSFTDWN-LLGPPPEFVG----LDNYARLFT------DPRFWNALGNTLLFTVVSVPLQLVLG 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503938003  96 MLSAFaIVWFRFPLRNLFFWMIFITLMLPVEV------RIF-PTVEVIANLKM---LDSYAGLTLPLMA--SATATFLFR 163
Cdd:COG1175   97 LLLAL-LLNRKLRGRGFFRTLFFLPWVISPVVvaliwkWLFnPDYGLLNALLGalgLEPINWLGDPSLAlpAVIIVTVWK 175

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 503938003 164 QF-FMTL---------PDELIEAARIDGASPMRFFRDIVLPLSKTNLAALFVITFIYGWNQY 215
Cdd:COG1175  176 GTgFNMLiflaglqsiPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVF 237
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
70-209 2.09e-06

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 48.62  E-value: 2.09e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503938003  70 SAPFWLMMLNSFIMAFGITVGKITVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPvevrifPTVEVIANLKMLDSYAGL- 148
Cdd:COG1178  333 DPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVP------GIVLGLGLLLLFNRPLPLl 406

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 503938003 149 ---TLPLMASATA----TFLFRQF---FMTLPDELIEAARIDGASPMRFFRDIVLPLSKTNLAALFVITFI 209
Cdd:COG1178  407 lygTLAILVLAYVvrflPFALRSLeaaLAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFV 477
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 16-209 4.77e-06

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 47.06  E-value: 4.77e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503938003  16 LILGIIVILFPLYVAFVAATLDTkavfdTPMTLIPGGHLFENMKTIWTQGVgansapFWLMMLNSFIMAFGITVGKITVS 95
Cdd:COG1176   19 LLWLLLFFVLPLLLLLVYSFTTR-----DPYGGVVPGFTLENYARLFTDPL------YLKVLLRTLWIALLTTLICLLLG 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503938003  96 MLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLKMLDS---YAGLT---LPLMASATATFL-FRQF--- 165
Cdd:COG1176   88 YPIAYFLARAPPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRNGLLNSlllALGLIdepLRLLYTEFAVVIgLVYVylp 167

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 503938003 166 FMTLP---------DELIEAARIDGASPMRFFRDIVLPLSKTNLAALFVITFI 209
Cdd:COG1176  168 FMVLPlyaalekidPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFI 220
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 16-210 2.21e-03

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 39.28  E-value: 2.21e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503938003   16 LILGIIVILFPLYVAFVAATLDTKAVFDTPMTLIPGGHLFENMKTiwtqgvgansAPFWLMMLNSFIMAFGITVGKITVS 95
Cdd:TIGR03262   5 LLLAGMILALLLFLLLPLLALLTKSVYDSDGDFIGLANFAEYFAT----------PGLLQSLGNSLTVSAIVTAIVVPLA 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503938003   96 MLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLKMLDSYAGLT----LPLMASATATFLFRQFFMTL-- 169
Cdd:TIGR03262  75 FAFAYALTRSRIPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQGLLKGLLGGFsiygFWGIVIGEVFYTFPHALMILvt 154

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 503938003  170 -----PDELIEAARIDGASPMRFFRDIVLPLSKTNLAALFVITFIY 210
Cdd:TIGR03262 155 alslaDGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTL 200
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 166-208 4.41e-03

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 37.81  E-value: 4.41e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 503938003 166 FMTLPDELIEAARIDGASPMRFFRDIVLPLSKTNLAALFVITF 208
Cdd:COG0555  159 LEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAF 201
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH