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Conserved domains on  [gi|504182348|ref|WP_014370317|]
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YpbS family protein [Paenibacillus mucilaginosus]

Protein Classification

YpbS family protein( domain architecture ID 10566654)

YpbS family protein is a DUF2533 domain-containing protein; similar to Bacillus subtilis protein YpbS

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF2533 pfam10752
Protein of unknown function (DUF2533); This family of proteins with unknown function appears ...
 1-83 7.35e-42

Protein of unknown function (DUF2533); This family of proteins with unknown function appears to be restricted to Bacillus spp.


:

Pssm-ID: 313867  Cd Length: 83  Bit Score: 131.34  E-value: 7.35e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504182348   1 MSVHEAITKHTRKQNAHLEQFLKLEERREQAIDEAVRLCAEGRPFSVETINAITGEINAHATQGISPTRVYVTPAMIEDF 80
Cdd:pfam10752  1 MSVHEAITAHSQKQHAHLKQFLELEQKREAAIEEAVSLCKQGEPFSTDKINEITKEMNQLAKQGIVPTRKYVTVEMVREY 80


                 ...
gi 504182348  81 VRR 83
Cdd:pfam10752 81 VSR 83
 
Name Accession Description Interval E-value
DUF2533 pfam10752
Protein of unknown function (DUF2533); This family of proteins with unknown function appears ...
 1-83 7.35e-42

Protein of unknown function (DUF2533); This family of proteins with unknown function appears to be restricted to Bacillus spp.


Pssm-ID: 313867  Cd Length: 83  Bit Score: 131.34  E-value: 7.35e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504182348   1 MSVHEAITKHTRKQNAHLEQFLKLEERREQAIDEAVRLCAEGRPFSVETINAITGEINAHATQGISPTRVYVTPAMIEDF 80
Cdd:pfam10752  1 MSVHEAITAHSQKQHAHLKQFLELEQKREAAIEEAVSLCKQGEPFSTDKINEITKEMNQLAKQGIVPTRKYVTVEMVREY 80


                 ...
gi 504182348  81 VRR 83
Cdd:pfam10752 81 VSR 83
 
Name Accession Description Interval E-value
DUF2533 pfam10752
Protein of unknown function (DUF2533); This family of proteins with unknown function appears ...
 1-83 7.35e-42

Protein of unknown function (DUF2533); This family of proteins with unknown function appears to be restricted to Bacillus spp.


Pssm-ID: 313867  Cd Length: 83  Bit Score: 131.34  E-value: 7.35e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504182348   1 MSVHEAITKHTRKQNAHLEQFLKLEERREQAIDEAVRLCAEGRPFSVETINAITGEINAHATQGISPTRVYVTPAMIEDF 80
Cdd:pfam10752  1 MSVHEAITAHSQKQHAHLKQFLELEQKREAAIEEAVSLCKQGEPFSTDKINEITKEMNQLAKQGIVPTRKYVTVEMVREY 80


                 ...
gi 504182348  81 VRR 83
Cdd:pfam10752 81 VSR 83
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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